BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497294
Length=2476
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57210.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 2071 0.0
> AT5G57210.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr5:23180833-23183811 REVERSE LENGTH=2575
Length=2575
Score = 2071 bits (1121), Expect = 0.0
Identities = 1384/1507 (92%), Gaps = 34/1507 (2%)
Strand=Plus/Plus
Query 1 AATTTTATGTTTTCTCATAAACAAAAAGTAAACCCAAATAGTTTGTTAATTTCCATCGAA 60
||||||||||||||||||||||||||||||||||| || | ||||| ||| |||||
Sbjct 6 AATTTTATGTTTTCTCATAAACAAAAAGTAAACCC-AA-A--TTGTT--TTT---TCGAA 56
Query 61 ACAAGAATCGATTTGGCACGAAGATTTGATGAGGCAAGA-GCGTTGTGTAGAAGAACATG 119
|||||||||||||||||||||| | | || || || | |||||| || ||||||
Sbjct 57 ACAAGAATCGATTTGGCACGAA-A-TCGA--AGATTTGATGAATTGTGT--AA-AACATG 109
Query 120 GCGATTCATGAAGAAATCCAGATATCAAGAACACAAGA--C-CCTTGCACTTC-CA--AT 173
|||||||||||||||| ||||||||||| ||||||||| | ||||||||||| | ||
Sbjct 110 GCGATTCATGAAGAAACCCAGATATCAACAACACAAGACCCTCCTTGCACTTCTAATGAT 169
Query 174 GCCTCGCCGTCTCAAGATCACCGGTTCGAGAAGCTTCGCGGCGTCCGTTGGCGAATCAAC 233
||||||||| |||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 170 GCCTCGCCGCCTCAAGATCATCGGTTCGAGAAGCTTCGTGGCGTCCGATGGCGAATCAAC 229
Query 234 CTCGGAATCTTGCCGTCCTCTCCTTCCTCCACCATTGATGAGCTTCGCAGAGTAACAGCT 293
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 CTCGGAATCTTACCGTCTTCTCCTTCCTCCACCATTGATGAGCTTCGCAGAGTAACAGCT 289
Query 294 GATTCCAGAAGAAGATATGCTGCTTTGAGAAGACGACTCTTAATTGATCCACATTTGCCT 353
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 290 GATTCCAGAAGAAGGTATGCTGCTTTGAGAAGAAGACTCTTAATTGATCCACATTTGCCT 349
Query 354 AAGAAAGGAACAAATTCTCCAGATCTAACTATTGATAATCCCTTATCACAAAATCCTGAT 413
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 350 AAGAAAGGAACAAATTCTCCAGATCTTACTATTGATAATCCTTTATCACAAAATCCTGAT 409
Query 414 AGTACTTGGGGAAGATTCTTTCGTAATGCAGAGCTCGAGAAAACGCTTGATCAAGATCTT 473
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 AGTACTTGGGGGAGATTCTTTCGTAATGCAGAGCTCGAGAAAACGCTTGATCAAGATCTT 469
Query 474 TCTCGGTTGTATCCAGAACATGGGAGTTATTTTCAATCCTCTGGATGCCAAGGGATG-TT 532
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| ||
Sbjct 470 TCTCGGTTGTATCCAGAACATGGAAGTTACTTTCAATCCTCTGGATGTCAAGGGATGCTT 529
Query 533 AAGAAGGATACTTCTTTTGTGGTGTTTGAAGCATCCTGAGATTGGTTATAGACAAGGGAT 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 -AGAAGGATACTTCTTTTGTGGTGTTTGAAGCATCCTGAGATTGGTTATAGACAAGGGAT 588
Query 593 GCATGAACTATTGGCTCCTTTGCTTTATGTTCTTCAAGTTGATGTGCAATATCTTACGGA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GCATGAACTATTGGCTCCTTTGCTTTATGTTCTTCAAGTTGATGTGCAATATCTTACGGA 648
Query 653 AGTTAGATCAAACTATGAAGATCAGTTTGTTGATTTGTTTGACGAGTTAGCGTTTCAAGA 712
||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 649 AGTGAGGTCAAACTATGAAGATCAGTTTGTTGATTTGTTTGACGAATTAGCGTTTCAAGA 708
Query 713 ACGTGATTCTGGAGCGTATGATTTCGATATAAAAAAGGTTTTGGATGATTCTATGGAAGA 772
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 709 ACGCGATTCTGGAGCTTATGATTTCGATATAAAAAAGGTTTTGGATGATTCCATGGAAGA 768
Query 773 TGAAGAAGATGGAGATGGAAGTGGTCCACCCTCTGGAAGCACCAAGAAGAAAAAACCAAA 832
||||||||| |||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 769 TGAAGAAGA---AGATGG---T---CCACCCTCTGGAAGCACAAAGAAGAAAAAACCAAA 819
Query 833 GAGTTTCGATGAACTTGATACCGAGACGCAGACTGCTGTGTTGTTGAGTGATGCGTATGG 892
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 820 GAGTTTCGATGAACTCGATACCGAGACGCAGACCGCTGTGTTGTTGAGTGATGCGTATGG 879
Query 893 AGCAGAAGGCGAATTGGGAATCGTCCTCTCTGAGAAATTCATGGAACACGACGCTTACAC 952
|| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 880 AGGAGAAGGCGAATTAGGAATCGTCCTCTCTGATAAATTTATGGAACACGACGCTTACAC 939
Query 953 AATGTTTGACGCTCTTATGTATGGTGGATCTTCCCTCGGGTCAGTTTCTGTAGCGAATTT 1012
|||||||||||||||||||| |||||||| ||||| || || ||||||||||| |||||
Sbjct 940 TATGTTTGACGCTCTTATGTACGGTGGATCCTCCCTTGGTTCGGTTTCTGTAGCCAATTT 999
Query 1013 CTTCGTGTATTCTGCTCCAAACGATTCTGTCACGGGACTTCCTCCTGTGATCGAAGCTTC 1072
|||| | ||||||||||| |||||||| |||||||||| |||||||| || ||||||||
Sbjct 1000 CTTCATCTATTCTGCTCCCAACGATTCCATCACGGGACTGCCTCCTGTAATTGAAGCTTC 1059
Query 1073 TGGGGCTTTGTATCATTTACTGTCTCTAGTCGATGCTTCTCTTCACAGCCATCTCGTTGA 1132
|||||| ||||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 1060 TGGGGCATTGTATCATCTACTTTCTTTAGTTGATGCTTCTCTTCACAGCCATCTCGTTGA 1119
Query 1133 GCTTGGCGTTGAACCACAGTACTTTGCTCTCCGTTGGCTACGGGTTTTGTTCGGGAGAGA 1192
|| || |||||||| ||||||||||| || |||||| |||||||| |||| ||| ||||
Sbjct 1120 ACTCGGTGTTGAACCGCAGTACTTTGCGCTTCGTTGGTTACGGGTTCTGTTTGGGCGAGA 1179
Query 1193 GTTTCCGCTGAATAATCTATTGATTGTGTGGGATGAGATATTTTCTGCTGACAACTCCGA 1252
||||| |||| |||||||||||| |||||||||||||||||||| |||||||| || ||
Sbjct 1180 ATTTCCACTGAGTAATCTATTGATCGTGTGGGATGAGATATTTTCCGCTGACAATTCTGA 1239
Query 1253 GGTAGAGAGAGGTATTGAGGCTGATTTAGGGTTTGAATTCAGGATCCTTAGCTCTCCCCG 1312
||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||
Sbjct 1240 AGTAGAGAGAGGCGTTGAGGCTGATCTAGGGTGTGAATTCAGGATCCTTAGCTCTCCTCG 1299
Query 1313 AGGAGCTCTGGTTGCTGGCATGGCGGTTTCGATGATACTTTATCTGAGATCATCGCTGCT 1372
||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1300 GGGAGCTCTGGTCGCGGGAATGGCGGTTTCGATGATACTTTATCTTAGATCATCGCTGCT 1359
Query 1373 AGCAACTGAAAACGCGACTTCTTCTCTCAAGAAGTTGCTGAATTTTCCGGAGGACATTGA 1432
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1360 AGCAACTGAAAACGCGACTTCTTCTCTTAAGAAGTTGCTCAATTTTCCGGAGGACATTGA 1419
Query 1433 TCTGAGTAAAGTTATTGAAAAGGCTAAGACATTGCAGAGTCTTGCTTTGGAAATCAATGC 1492
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 TCTGAGTAAAGTTATCGAAAAGGCTAAGACATTGCAGAGTCTTGCTTTGGAAATCAATGC 1479
Query 1493 TCATCGT 1499
|| ||||
Sbjct 1480 TCGTCGT 1486
Score = 1096 bits (593), Expect = 0.0
Identities = 814/913 (89%), Gaps = 45/913 (5%)
Strand=Plus/Plus
Query 1577 CGTTGCAGAGACC-AAAGCA-GGAAGAAGAAG-T-GTC-GAAAGAGTGAAGCTAA-GCTT 1630
||||||||||||| |||||| |||||||| || | ||| |||||||||||||||| ||||
Sbjct 1650 CGTTGCAGAGACCAAAAGCAGGGAAGAAG-AGTTGGTCGGAAAGAGTGAAGCTAAGGCTT 1708
Query 1631 AC-A-GACAGAATCCGATCCGTCACCCGCTGAAGCAAATAAAAGCGGAAACAAACCGCCT 1688
| | |||||||||||||||||| |||||||||||||| | |||||| ||||| || | |
Sbjct 1709 TCAAGGACAGAATCCGATCCGTCTCCCGCTGAAGCAAAGAGAAGCGGGAACAAGCCTCAT 1768
Query 1689 ATTAGACGTAGTTTGCTCGATGATTTATCCCGACAACTCGGGGAAAAAGAGATTGAGCCT 1748
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1769 ATTAGACGTAGTTTGCTCGATGATTTATCCCGACAACTAGGGGAAAAAGAGATTGAGCCT 1828
Query 1749 CCCGAGTTCCCAAACCCGGACACTGATATCGAACGCTCATCTACGGTATCTGATACTCCC 1808
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1829 CCCGAGTTCCCAAACCCAGACACCGATATCGAACGCTCATCTACAGTATCTGATACTCCC 1888
Query 1809 AGTGCAGATTATGAGGATAACAGTTCTGATAGAGGCAAAAGCGACAACCACACGGATCTG 1868
|||||||| |||||||||||||||||||||| ||||||||| || ||||||| |||||||
Sbjct 1889 AGTGCAGAGTATGAGGATAACAGTTCTGATAAAGGCAAAAGTGAGAACCACATGGATCTG 1948
Query 1869 CCTCTTTCAATTCCTGAGAACGAGCCAGAGGCGAAATCAGGGATGAATATCTTCAGAGAG 1928
|||||||| || || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1949 CCTCTTTCTATCCCGGAGAACGAGCCAGAGGCGAAATCAGGGATGAATATTTTCAGAGAG 2008
Query 1929 AGGAAGATTCTTTCGGGTAAATTCCAGAGGCTATGGAGGTTAGGTAGAAACTTGTCCGGC 1988
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 2009 AGGAAGATTCTTTCGGGTAAATTCCAGAGGCTATGGAGGCTAGGTAGAAACTTGTCTGGC 2068
Query 1989 GAAGAGACCTCTGAGACGAAAGAAGCTAAACAGATAGATTTTGAAGACGGAAAAACCGAT 2048
||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||
Sbjct 2069 GAAGAGACCTCTGAGACTAAAGAAGCTAAACAGGTAGATTCTGAAGACGGAAAAACCGAT 2128
Query 2049 TCAGATTCAACTGCAGGTAATGGAGATGCCTTAAAGAATACAGGAAGATCCATGCTTGAA 2108
|||||||||||| ||||| ||| ||| | ||||||||||||||| | ||||||||||||
Sbjct 2129 TCAGATTCAACTTCAGGTCCTGGCGATTCATTAAAGAATACAGGACGGTCCATGCTTGAA 2188
Query 2109 CATATCAAGGTGATAGAGTCAGTGTTGGAGCTAAGTCCACCGGAGAATATGGCTGTGACT 2168
||||| |||||||||||||| ||||||||||||||| |||| ||||||||| ||| |
Sbjct 2189 CATATTAAGGTGATAGAGTCGGTGTTGGAGCTAAGTTCACCAGAGAATATGACTG--A-- 2244
Query 2169 GAGAACGGAAGAA-TAACAGTTGACGAAGCTCTTAGAGAACTTCGTAGACTTGGAAATAT 2227
| ||||||| || |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2245 -A-AACGGAA-AACTAACAGTTGAAGAAGCTCTTAGAGAACTTCGTAGACTTGGAAATAT 2301
Query 2228 GTTATTGTCAGAAATGTAAAGTTTATTGCAGACTCG--T---GTA-TT--AT-G---A-- 2273
||||||||| ||||||||||||| |||||||||||| | ||| || || | |
Sbjct 2302 GTTATTGTCGGAAATGTAAAGTTCATTGCAGACTCGGCTTACGTAATTTCATTGTGTATT 2361
Query 2274 AC-A---TTCATTTGTCTCTAtgtgtgtatgtgtgtgtAAGAGAGAGTGT-A-ATTGTAA 2327
| | ||||||| ||||| |||| ||||||||| | |||||| || | | |||||
Sbjct 2362 ATGAAAATTCATTTTTCTCT--GTGT--ATGTGTGTG-A-GAGAGACTGAGAGAGTGTAA 2415
Query 2328 TGTATATATGAGAAATTTTGAAGAGGGTTTTGTTTTTCTTTTAGCAGTTTCTTCTAGTAC 2387
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 2416 TGTATATATGAGAAATTTTGAAGAG--TTTTGTTTTTCTTTTAGCAGTTTCTTCTAGCAC 2473
Query 2388 AAGGGACTTGTGTTTCTTTGGACTTTGTAAACCCTAACGGGTTTTTAACGGTTCTTAGTG 2447
||||||| || ||||||||||||||||| | |||||||||||||||||||||| ||||||
Sbjct 2474 AAGGGACCTGAGTTTCTTTGGACTTTGTTAGCCCTAACGGGTTTTTAACGGTTTTTAGTG 2533
Query 2448 ACAAGAGATAAAA 2460
|| ||||||||||
Sbjct 2534 ACGAGAGATAAAA 2546
Score = 135 bits (73), Expect = 1e-30
Identities = 77/79 (97%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 1498 GTCACAGCTTATCAGTTGATTCTATCTCACTTGGTTCTTCTCCTGTGGGAATAGTACCTG 1557
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1524 GTCACAGCTTATCAGTTGATTCGATCTCACTTGGTTCTTCTCCTGTGGGAATAGAACCTG 1583
Query 1558 AGAGCTACTGGGAAGAGAA 1576
|||||||||||||||||||
Sbjct 1584 AGAGCTACTGGGAAGAGAA 1602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122858843407
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5