BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497295
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31160.1 | Symbols: LSH3 | Protein of unknown function (DUF6... 1399 0.0
> AT2G31160.1 | Symbols: LSH3 | Protein of unknown function (DUF640)
| chr2:13277811-13278745 FORWARD LENGTH=935
Length=935
Score = 1399 bits (757), Expect = 0.0
Identities = 818/848 (96%), Gaps = 2/848 (0%)
Strand=Plus/Plus
Query 62 AAAAATGGATATGATTCCCCAATTGATGGAAGGCTCTTCAGCTTACGGAGGTGTCACAAA 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 AAAAATGGATATGATTCCCCAATTGATGGAAGGCTCTTCAGCTTACGGAGGTGTCACAAA 148
Query 122 CCTCAACATCATCTCAGACAACTCCTCTTCCGTCACCGGAGCCACCGCAGGTGAAGCAAC 181
|||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 149 CCTCAACATCATCTCAAACAACTCCTCCTCCGTCACCGGAGCCACCGGAGGTGAAGCAAC 208
Query 182 ACAACCACCGTCTTCTTCCTCCTCACCATCGGTGAACTCAAGCCGTTACGAGAACCAGAA 241
||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 209 GCAACCACTGTCTTCCTCCTCCTCACCATCGGCGAACTCAAGCCGTTACGAGAACCAGAA 268
Query 242 GAGGAGAGACTGGAACACGTTCGGGCAGTACTTAAGGAACCATCGGCCACCGCTTTCTCT 301
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 269 GAGGAGAGACTGGAACACGTTCGGACAGTACTTAAGGAACCATCGGCCACCGCTTTCGCT 328
Query 302 TTCCCGATGCAGTGGAGCTCACGTGCTCGAGTTCCTCCGTTACTTGGACCAGTTCGGTAA 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 TTCCCGATGCAGTGGAGCTCACGTGCTCGAGTTCCTCCGTTACTTGGACCAGTTCGGTAA 388
Query 362 AACAAAAGTTCACACGAACGTTTGTCACTTCTACGGCCATCCTAATCCTCCGGCACCGTG 421
|||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 389 GACAAAAGTCCACACGAACATTTGTCACTTCTATGGCCATCCTAATCCTCCGGCACCGTG 448
Query 422 TCCTTGTCCTCTCCGACAAGCTTGGGGAAGTCTTGACGCTCTCATCGGTCGTCTTCGAGC 481
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 449 TCCGTGTCCTCTCCGACAAGCTTGGGGAAGTCTTGACGCTCTTATCGGTCGTCTTCGAGC 508
Query 482 TGCCTTTGAAGAAAACGGAGGCAAGCCTGAGACGAATCCTTTTGGAGCTCGTGCCGTTAG 541
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 TGCCTTTGAGGAAAACGGAGGCAAGCCTGAGACGAATCCTTTTGGAGCTCGTGCCGTTAG 568
Query 542 GCTTTATCTAAGGGAAGTTAGAGATATGCAGAGCAAAGCTAGAGGTGTTAGCTACGAGAA 601
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 569 GCTTTATCTAAGGGAAGTTAGAGATATGCAGAGTAAAGCTAGAGGTGTTAGCTACGAGAA 628
Query 602 GAAGAAGCGAAAGCGTCCTCTTCCTCCGTCGTCGGCTTCTTCTTCCTCCGCCGTAGCTAG 661
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 629 GAAGAAGCGAAAGCGTCCTCTTCCTTCGTCGTCGACTTCTTCTTCCTCCGCCGTAGCTAG 688
Query 662 CCATCAGCAATTTCAAATGCTACCGAGTACTAGTTCTACTACTCAATTAAAGTTTGAGAA 721
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 689 CCACCAGCAATTTCAAATGCTACCGGGTACTAGTTCTACTACTCAATTAAAGTTTGAGAA 748
Query 722 GTAAGTAATTATATAATTAAGAGAAATGAAATATTTTATGTAATCTAAAATGTGAATGGG 781
|||||||||||||||||||||||||||| | ||||||||||||||| |||||||| | ||
Sbjct 749 GTAAGTAATTATATAATTAAGAGAAATGGAGTATTTTATGTAATCTGAAATGTGATTTGG 808
Query 782 TCTCTTTCTTATATGTTGATTTTAATTTTAGGTTATGTGGTTCAGTTTTAGTTACTAGTG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 TCTCTTTCTTATATGTTGATTTTAATTTTAGGTTATGTGGTTCAGTTTTAGTTACTAGTG 868
Query 842 TATGTTGGGGA-AGGAAGGTAGGGTTTTCAATTTTTATTTATATCTAATAAAAGAGAAAT 900
|||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 869 TATGCTGGGGGGAGGAAGGTAGGGTTTTCAATTTT-ATTTATATCTAATAAAAGAGAAAT 927
Query 901 TCACATGT 908
||||||||
Sbjct 928 TCACATGT 935
Score = 108 bits (58), Expect = 1e-22
Identities = 60/61 (98%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 1 AACCGCACAAACAAAATTTCAGCTCCTCCATATACATCAAGAAAGATCAAGAATCAAGAA 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AACCGCACAAACAAAATTTCAGCTCCTCCATATCCATCAAGAAAGATCAAGAATCAAGAA 60
Query 61 C 61
|
Sbjct 61 C 61
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44356751801
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5