BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497297
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22810.1 | Symbols: | Plant protein of unknown function (DU... 2006 0.0
> AT3G22810.1 | Symbols: | Plant protein of unknown function (DUF828)
with plant pleckstrin homology-like region | chr3:8068516-8071559
FORWARD LENGTH=1498
Length=1498
Score = 2006 bits (1086), Expect = 0.0
Identities = 1257/1337 (94%), Gaps = 21/1337 (2%)
Strand=Plus/Plus
Query 21 AAAATGGAAAAACCAGTGCTTCCACCATGGCGTTCCGACCCAA-TTTTCCGGCCACCGGA 79
|||||||| ||||||||| || |||||||||||||||| |||| ||||||||||||||||
Sbjct 77 AAAATGGAGAAACCAGTGTTTGCACCATGGCGTTCCGA-CCAAGTTTTCCGGCCACCGGA 135
Query 80 GACACCATTAGAGCCGATGGAGTTTCTCTCTCGCTCTTGGAGTGTTTCAGCTCACGAAGT 139
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 136 GACACCATTAGAGCCGATGGAGTTTCTCTCTCGCTCCTGGAGCGTATCAGCTCACGAAGT 195
Query 140 CTCCAAAGCTCTCACTCCTTCTCAGCAAATCCTCTC-TAAGAATACAATCGAAAGCACCA 198
|||||||||||||||||||||||||||| ||||||| ||| | ||||||||| |||||
Sbjct 196 CTCCAAAGCTCTCACTCCTTCTCAGCAACTCCTCTCAAAAGCCT-CAATCGAAAACACCA 254
Query 199 CCGTCATTCTCGAAGAAGAACAACCCATCACCGCCGGCGAGACTGAAACGGAGGAGAACA 258
||||||||||| |||| |||||||| ||||||||||||| ||||||||||| ||||
Sbjct 255 CCGTCATTCTC---GAAG---AACCCATCGCCGCCGGCGAGACCGAAACGGAGGACAACA 308
Query 259 GTTTCGTCTCCGGAAACACTTTCTCCTTCGCTTGCTCCGAAACTTCTCAGATGGTCATGG 318
| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 309 GCTTCGTCTCCGGAAACCCTTTCTCCTTCGCTTGCTCAGAAACTTCTCAGATGGTCATGG 368
Query 319 ATCGTATCTTATCTCAGTCTCAAGAAGTGTCGCCACGAACATCTGGTCGGCTTTCTCATA 378
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 369 ATCGTATCTTATCTCAGTCTCAGGAAGTGTCGCCACGAACATCTGGTCGGCTTTCTCATA 428
Query 379 GCAGCGGTCCTCTCAATGGTTCTTTAACCGACAGTCCTCCGATTTCACCGCATGAAGTCG 438
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 429 GCAGCGGTCCTCTCAATGGTTCTTTAACCGACAGTCCTCCGATTTCGCCGCATCAAGTCG 488
Query 439 ACGACATTAAGCAATTTTGTCGATCAAACAATAACTTCAACTCTCAATTCCGTTCAACGG 498
||||||||||||||||||| ||||||||||| || ||||||||||||| |||||||||||
Sbjct 489 ACGACATTAAGCAATTTTGCCGATCAAACAACAATTTCAACTCTCAATACCGTTCAACGG 548
Query 499 GAACAACTCCGGGACCTATAACGGCAACAACTACACAGTCCAAGCCGGTTGGACGGTGGT 558
||||||||||||||||||| || ||||||||||||||||||||| | |||||||||||||
Sbjct 549 GAACAACTCCGGGACCTATCACTGCAACAACTACACAGTCCAAGACAGTTGGACGGTGGT 608
Query 559 TGAAAGACCGGAGGGAGAAAAAGAAGGAAGAGACT-AGGGCACACAATGCTCAGATACAT 617
|||||||| |||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 609 TGAAAGACAGGAGGGAGAAAAAGAAGGAAGAGA-TGAGAGCACACAATGCTCAGATACAT 667
Query 618 GCTGCTGTATCCGTTGCTGGTGTGGCAGCTGCGGTGGCTGCTATCGCGGCTGCAACCGCT 677
||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 668 GCTGCTGTATCAGTAGCTGGTGTGGCAGCCGCGGTGGCTGCTATCGCGGCTGCAACTGCT 727
Query 678 GCTTCGTCGAGCT-CTGGGAAAGATGAGAATATGGCTAAAACGGATATGGCTGTGGCTTC 736
||||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 728 GCTTCGTCGAG-TGCTGGAAAAGATGAGAATATGGCTAAGACGGATATGGCTGTGGCTTC 786
Query 737 TGCTGCAACACTTGTGGCTGCTCAATGTGTGGAGGCTGCTGAAGTTATGGGAGCTGAGAG 796
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 787 TGCTGCAACACTTGTGGCTGCTCAATGTGTGGAAGCTGCTGAAGTTATGGGAGCTGAGAG 846
Query 797 GGATCATTTAGCTTCTGTTGTTAGTTCTGCTGTTAATGTTCGATCCGCCGGAGATATCAT 856
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 847 GGATCATTTAGCTTCCGTTGTTAGTTCTGCTGTTAATGTTCGATCTGCGGGAGATATCAT 906
Query 857 GACATTAACTGCTGGAGCAGCTACAGCGTTAAGAGGAGTGGCTACATTGAAGGCGAGGGC 916
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 907 GACATTAACCGCTGGAGCAGCCACAGCGTTAAGAGGAGTGGCTACATTGAAGGCTAGAGC 966
Query 917 GATGAAGGAGGTGTGGAACATTGCATCAGTTATTCCAATGGATAAAGGAATCAATCCCGG 976
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 967 TATGAAGGAGGTGTGGCACATTGCATCAGTTATTCCAATGGATAAAGGAATCAATCTCGG 1026
Query 977 AGGTTGCAGCAATGTTAATGGTAACGGTAATGGTAGCAATGTCAGCTCAAGCAGCAGTCA 1036
||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct 1027 AGGTTGCAGCAATGTTAATGGTAACGG----G--AGCTATGTCAGCTCAAGCAGCAGTCA 1080
Query 1037 CAGTGGCGAATTTCTAGTTGAGGATAATTTCTTGGGACATTGCAACAGAGAATGGCTTGC 1096
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1081 TAGTGGCGAATTTCTAGTTGAGGATAATTTCTTGGGACATTGCAATAGAGAATGGCTTGC 1140
Query 1097 TCGAGGTGGCCAGCTTCTTAAACGTACCCGCAAAGGTGATCTTCATTGGAAAATAGTTTC 1156
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1141 TCGAGGTGGCCAACTTCTTAAACGCACCCGCAAAGGTGATCTTCATTGGAAAATAGTTTC 1200
Query 1157 TGTTTACATAAATAGGCTAAATCAAGTTATATTGAAGATGAAGAGCAGGCATGTAGGAGG 1216
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AGTTTACATAAACAGGCTAAATCAAGTTATATTGAAGATGAAGAGCAGGCATGTAGGAGG 1260
Query 1217 GACCTTCACAAAGAAGAACAAAAATCTTGTGATTGATGTGATCAAAAACATTCCGGCTTG 1276
||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 1261 GACCTTCACGAAGAAGAACAAAAATGTTGTGATTGATGTGATCAAAAACGTTCAAGCTTG 1320
Query 1277 GCCAGGCCGCCATTTGCTGGAAGGAGGAGAGGATTTGAGATACTTTGGGTTAA-GACGGT 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1321 GCCAGGCCGCCATTTGCTGGAAGGAGGAGAGGATTTGAGATACTTTGGGTTAAAGACGGT 1380
Query 1336 TCCGCGAGGGATTGTAG 1352
|||||||||||||||||
Sbjct 1381 TCCGCGAGGGATTGTAG 1397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66565922670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5