BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497300
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27180.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 811 0.0
> AT2G27180.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G11690.1);
Has 99 Blast hits to 99 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11620233-11621174
FORWARD LENGTH=942
Length=942
Score = 811 bits (439), Expect = 0.0
Identities = 617/696 (89%), Gaps = 40/696 (6%)
Strand=Plus/Plus
Query 123 AATGACTCGTCACGTGATTTTAAAATCGCCGTTGTTAGCTTCAACGGAAGAATCAACGAT 182
||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||
Sbjct 240 AATGACTCGTCACGTGATTTTAAAATCCCCGTTGTTAGTTTCATCGGAAGAATCAACGAT 299
Query 183 GAGAAACTCTCCTCCTAT-GACGACGGCGTTGAGCAAAGAGAGACGCAAGGTTGGGGAGG 241
|||||||||||||||| | ||||||| |||| |||||||||||||| || ||||| ||||
Sbjct 300 GAGAAACTCTCCTCCT-TCGACGACGTCGTTAAGCAAAGAGAGACGAAAAGTTGGAGAGG 358
Query 242 TAGCGGGAGGAGCGGCGGCGGAGTGTGCGGCGGTTTGGTGTTGTTGTCCATGCGCGGTTG 301
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 359 TAGCGGGAGGAGCGGCGGCGGAGTGTGCGGCTGTGTGGTGTTGTTGTCCATGCGCGGTGG 418
Query 302 TGAATCTGGTGGTTTTAGCCGTGTATAAAGTTCCGGCGGCGGTTTGTAAAAAAGCTTGGA 361
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 419 TGAATCTAATGGTTTTAGCCGTGTATAAAGTTCCGGCCGCGGTTTGTAAAAAAGCTTGGA 478
Query 362 GACGAAGTAAACGACGACGTTTTACGAGGAAACGACATGGTTTGCTTGCGTCAGCGACGG 421
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GGCGAAGCAAACGACGACGTTTTACGAGGAAACGACATGGTTTGCTTGCGTCAGCGACGG 538
Query 422 CAGAAGGAAGTGAGAGCACCGTACACGCTAGATTGAATGGGGAAGATCTAACGGCTGAGA 481
| |||||||| || || |||||||||||||||||||||| |||||||||||||||||||
Sbjct 539 CGGAAGGAAGCGAAAGTACCGTACACGCTAGATTGAATGAAGAAGATCTAACGGCTGAGA 598
Query 482 TTGTTTTTGAGGATTGTCAAGTGA---ATGGTGAGTTAAACGACGTCGTTAGGCTTGAGA 538
||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||| |
Sbjct 599 TTGTTTTTGAGGAATGTCATGTGAGTGGTGGTGAGTTAAACGACGTCGTCAGGCTTGAAA 658
Query 539 ATGAAATGTTGGATCGTTTCTATGGGGCTGGCTTTTGGAGAAGCCCTTCACAGAGGGACA 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 659 ATGAAATGTTGGATCGTTTCTATGGGGCTGGCTTTTGGAGAAGCCCTTCACAGAAGGACA 718
Query 599 CGTCATCAGGAAGCCTATGAATTCTTCTT---ATGAGTCTTTTGGGTTTTT-GAAAGAAC 654
||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct 719 CGTCATCAGGAAGCCTATGAATTCTTCTTCTTATGAGTATTTTGGGTTTTTTGAAAGAAT 778
Query 655 TA-TAGTAATTTATTT-T-----ATGT-A---------A-GT---TT-AATTGT-----G 687
|| ||||||||||||| | || | | | || || |||||| |
Sbjct 779 TAATAGTAATTTATTTGTTTTTTATTTTATTTTTTTGTATGTAAGTTCAATTGTTTTATG 838
Query 688 TGGG-TATGTGAATAGGAGAACCT---AGCATCCTTTATACAATTTTATTTGTTTTCTGT 743
|||| ||||||||||| ||||| | || || ||||||||| |||||||||||||||||
Sbjct 839 TGGGGTATGTGAATAGAAGAACATTGTAGTATACTTTATACATTTTTATTTGTTTTCTGT 898
Query 744 TCGTTTTAAATGTAACTATGTCTCATTGTGTTAGAA 779
|||||| ||||||||||||||||| |||||| ||||
Sbjct 899 TCGTTTAAAATGTAACTATGTCTCTTTGTGTCAGAA 934
Score = 152 bits (82), Expect = 5e-36
Identities = 96/102 (94%), Gaps = 4/102 (4%)
Strand=Plus/Plus
Query 28 AAAATGATGAATGACCTTAT---CAACGATGGGTCAATTTTCACTAGATTCTATTTCCTC 84
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 86 AAAATGATGAATGACCTTATCAACAACGATGGGTCAATTTTCACTAGATTCTATTTCCTC 145
Query 85 GGAGAAATCTGAGAGAAAGAGGTTATTTCACTAATCGT-AAT 125
||||| |||||||||||| ||||||||||||||||||| |||
Sbjct 146 GGAGATATCTGAGAGAAAAAGGTTATTTCACTAATCGTTAAT 187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37876546838
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5