BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497301
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70840.1 | Symbols: MLP31 | MLP-like protein 31 | chr1:26712... 937 0.0
AT1G70890.1 | Symbols: MLP43 | MLP-like protein 43 | chr1:26725... 276 2e-73
> AT1G70840.1 | Symbols: MLP31 | MLP-like protein 31 | chr1:26712982-26714066
REVERSE LENGTH=756
Length=756
Score = 937 bits (507), Expect = 0.0
Identities = 592/631 (94%), Gaps = 14/631 (2%)
Strand=Plus/Plus
Query 1 CTAGAGACAGATGTTGAAATCAAAGCTTCAGCTGGGAAGTTCCATCACATGTTTGCTGGG 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CTAGAGACAGATATTGAAATCAAAGCTTCAGCTGGGAAGTTCCATCACATGTTTGCTGGG 181
Query 61 AGACCACACCATGTCTCCAAAGCAACTCCAGGGAAAATTCAGGGCTGTGAGCTTCATGAA 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 182 AGACCACACCATGTCTCCAAAGCAACTCCAGGGAAAATTCAGGGTTGTGAGCTGCATGAA 241
Query 121 GGCGAATGGGGCAAAGTCGGCTCTATAGTCTTCTGGAATTATGTTCATGGCAAAATAGAT 180
|| || |||||||||||||||||||| |||||||||||||||| | | | || |||
Sbjct 242 GGTGACTGGGGCAAAGTCGGCTCTATCGTCTTCTGGAATTATG-T--T--C---AT-GAT 292
Query 181 GGAGAGGCAAAGGTGGCAAAAGAGAGGATTGAGGCAGTGGAGCCGGAGAAAAACCTCATC 240
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 293 GGAGAGGCAAAGGTGGCAAAAGAAAGGATCGAGGCAGTGGAGCCGGAGAAAAACCTGATC 352
Query 241 ACTTTTAGGGTGATAGAGGGAGACTTATTAAAAGAGTATAAGAGCTTTGTGATCACAATC 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 353 ACTTTTAGGGTGATAGAGGGAGACTTATTAAAAGAGTATAAAAGCTTTGTGATCACAATC 412
Query 301 CAAGTGACTCTTAAAAGAGGAGGACCTGGGAGTGTGGTGCACTGGCACGTCGAGTATGAG 360
|||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CAAGTGACCCCTAAGAGAGGAGGACCTGGGAGTGTGGTGCACTGGCACGTCGAGTATGAG 472
Query 361 AAAATTGACGACAAAGTGGCTCACCCTGAGACCTTCCTTGATTTCTGTGTCCAAGTCTCC 420
|||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 473 AAAATTGACGACAAAGTGGCCCACCCTGAGACCTTTCTTGATTTCTGTGTGGAAGTCTCC 532
Query 421 AAAGAGATCGATGAACATCTCCTGAACGAGGAATAGAGAGTACTCTTTAATTGAGTATCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 AAAGAGATCGATGAACATCTCCTGAACGAGGAATAGAGAGTACTCTTTAATTGAGTATCT 592
Query 481 ATCCAATAATGTGTATATGTCA-GTTATGAAGCACGCATGTTCTTGTGTATGATACAATA 539
||| | || ||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 593 ATC-A-TA-TGTGTATATGT-ATGTTATGAAGCACGCATGTTCTTGTGTATGATACAATA 648
Query 540 AACAAGGAGCGTAGCCCAATATATGTGAGTGATATAGAAAAGAGTTGTACTCTAGATGTG 599
||||||||| || ||||||||||||||||||||| | ||||| |||||||||| |||||
Sbjct 649 AACAAGGAGAGTTGCCCAATATATGTGAGTGATACATAAAAGCTTTGTACTCTAAATGTG 708
Query 600 TGTATGTCATGTTTGGTTTTAATAAAAGCTT 630
||||||||||||||||||||||||||||||
Sbjct 709 AGTATGTCATGTTTGGTTTTAATAAAAGCTT 739
> AT1G70890.1 | Symbols: MLP43 | MLP-like protein 43 | chr1:26725626-26726544
REVERSE LENGTH=818
Length=818
Score = 276 bits (149), Expect = 2e-73
Identities = 363/463 (78%), Gaps = 27/463 (6%)
Strand=Plus/Plus
Query 4 GAGACAGATGTTGAAATCAAAGCTTCAGCTGGGAAGTTCCATCACATGTTTGCTGGGAGA 63
|||||||| || || ||||||||||| || |||||||||||||||||| | | ||||
Sbjct 89 GAGACAGAAGTGGAGATCAAAGCTTCGGCCAAAAAGTTCCATCACATGTTTACCGAGAGA 148
Query 64 CCACACCATGTCTCCAAAGCAACTCCAGGGAAAATTCAGGGCTGTGAGCTTCATGAAGGC 123
|||||||||||||||||||||||||||| |||||||| || |||||||| || ||||||
Sbjct 149 CCACACCATGTCTCCAAAGCAACTCCAGATAAAATTCATGGATGTGAGCTGCACGAAGGC 208
Query 124 GAATGGGGCAAAGTCGGCTCTATAGTCTTCTGGAATTATGTTCATGGCAAAATAGATGGA 183
|| |||||||||||||||||||| ||| ||||||| || ||||||| || || | |
Sbjct 209 GACTGGGGCAAAGTCGGCTCTATCGTCATCTGGAAATACGTTCATGATGGAA-AGTT--A 265
Query 184 GAGGCAAAGGTGGCAA-AAGAGAGGATTGAGGCAGTGGAGCCGGAGAAAAACCTCATCAC 242
| || || || || || | || || ||||| ||||| |||||||| ||||| |||||
Sbjct 266 -A--CAGTGG-GG-AAGAATA-AG-ATCGAGGCGGTGGATCCGGAGAAGAACCTGATCAC 318
Query 243 TTTTAGGGTGATAGAGGGAGA-CTTATTAAAAGAGTATAAGAGCTTTGTGATC-ACAATC 300
|| | ||| |||| || || || || || ||||| |||||||| | || ||| ||
Sbjct 319 GTTCAAGGTTTTAGAAGGTGATCTGATGAAT-GAGTACAAGAGCTTCGC-ATTTACACTC 376
Query 301 CAAGTGACTCTTAA--AAGAGGAGGACCTGGGAGTGTGGTGCACTGGCACGTCGAGTATG 358
|||||||| | ||| ||| |||| | |||||| | | |||||||||| | |||||||
Sbjct 377 CAAGTGACCCCTAAGCAAGGGGAGT-CA-GGGAGTATTGCGCACTGGCACCTGGAGTATG 434
Query 359 AGAAAATT-GACGACAAAGTGGCTCA-CCCTGAGACC-TTCCTTGATTTCTGTGTCCA-A 414
|||||||| | ||| | || ||||| ||| || ||| ||| | | ||||||||| | |
Sbjct 435 AGAAAATTAG-CGAGGAGGTAGCTCATCCC-GAAACCCTTC-TCCAATTCTGTGTCGAGA 491
Query 415 GTCTCCAAAGAGATCGATGAACATCTCCTGAACGAGGAATAGA 457
|||||||||||||||| ||||||||| || |||||||||||
Sbjct 492 -TCTCCAAAGAGATCGACGAACATCTCTTGGCCGAGGAATAGA 533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5