BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497309
Length=1420
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46870.1 | Symbols: NGA1 | AP2/B3-like transcriptional facto... 2039 0.0
AT3G61970.1 | Symbols: NGA2 | AP2/B3-like transcriptional facto... 313 4e-84
> AT2G46870.1 | Symbols: NGA1 | AP2/B3-like transcriptional factor
family protein | chr2:19260918-19262404 FORWARD LENGTH=1487
Length=1487
Score = 2039 bits (1104), Expect = 0.0
Identities = 1355/1465 (92%), Gaps = 61/1465 (4%)
Strand=Plus/Plus
Query 1 CATCATAACACTGCTGATTTCTCTCTTCTTGGTTTCTCATTCTTCTTCTGAAAAATCTTG 60
||| ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 15 CATTATAACTCTGCTGATTTCTCTCTTCTTGTTTTCTCATTCTTCTTCTAAAAAATCTTG 74
Query 61 ACAACttttt-tttgt-ttttgttt-tCT---TTCTCT----------G-G--AT-T--- 97
|||||||||| ||| | |||| ||| ||| || | | | | || |
Sbjct 75 ACAACTTTTTGTTTTTGTTTTCTTTCTCTGAATTTTTTAAAAGAGAGAGAGCTATGTAGC 134
Query 98 T-TGAAACAGTAAGAGATATAGATATAGAGAGACAGAGAAAGATGATGATCAGTGAAGTT 156
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 TATGAAACAGTAAGAGATATAGATATAGAGAGACAGAGAAAGATGATGATCAGTGAAGTT 194
Query 157 AGGCTAAACCCACTTTCTATTTATGTATAATTAGGTCAATCACATCACCAATCTCCTCCT 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 AGGCTAAACCCACTTTCTATTTATGTATAATTAGGTCAATCACATCACCAATCTCCTCCT 254
Query 217 CCAATTCTC-T--TC-C-T---AAAT-CTAGGGTTTTGCTTGTATCTC-CTCC-TTTCTC 265
||||||||| | || | | |||| ||||||||||||||||||||| | || ||||||
Sbjct 255 CCAATTCTCCTCCTCTCCTTCCAAATTCTAGGGTTTTGCTTGTATCTCACCCCCTTTCTC 314
Query 266 AATTCCCTCCGGAAGCTGTGAATT-CATCAAATTCCATTATTCTT-GGTCACACCCTTAA 323
|||||||| |||| ||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 315 AATTCCCTAGGGAAACTGTGAATTTCATCAAATTCCATTATTTTTTGGTCACACCCTTAA 374
Query 324 -GAGATCTG-G-GTTCTAAAGATGATGACAGATTTATCTCTCACaagagatgaagatgaa 380
|||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 375 AGAGATCTGAGAGTTCTAAAGATGATGACAGATTTATCTCTCACGAGAGATGAAGATGAA 434
Query 381 gaagaagaagcaaagcccttagaagaagaaggagcaggaacgagagaagtagcagagaga 440
||||||| |||||||||||| |||||||| | |||| || | ||||||||||| |||
Sbjct 435 GAAGAAG---CAAAGCCCTTAGCAGAAGAAG-A--AGGAGCGCGTGAAGTAGCAGACAGA 488
Query 441 gagcaCATGTTCGACAAAGTTGTGACTCCAAGTGATGTCGGAAAACTAAACCGACTTGTG 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GAGCACATGTTCGACAAAGTTGTGACTCCAAGTGATGTCGGAAAACTAAACCGACTTGTG 548
Query 501 ATCCCAAAGCAACACGCAGAGAGATTCTTCCCTTTAGATTCATCTTCTAACGAGAAAGGT 560
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 549 ATCCCAAAGCAACACGCAGAGAGATTCTTCCCTTTAGATTCATCTTCAAACGAGAAAGGT 608
Query 561 TTGCTTTTAAACTTCGAAGATCTCACAGGCAAATCATGGAGGTTCCGTTACTCTTACTGG 620
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 609 TTGCTTTTAAACTTCGAAGATCTCACTGGCAAATCTTGGAGGTTCCGTTACTCTTACTGG 668
Query 621 AACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCAGATTCGTTAAAGACAAAAAG 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 AACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCAGATTCGTTAAAGACAAAAAG 728
Query 681 CTTGACGCCGGAGATATTGTCTCTTTTCAAAGATGTGTCGGAGATTCAGGAAGAGATAGT 740
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 729 CTTGACGCCGGAGATATTGTCTCTTTCCAAAGATGTGTCGGAGATTCAGGAAGAGATAGC 788
Query 741 CGTTTGTTTATTGATTGGAGGAGACGACCTAAAGTCCCTGACCATCCTCATTTCGCCGCC 800
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 789 CGTTTGTTTATTGATTGGAGGAGAAGACCTAAAGTCCCTGACCATCCTCATTTCGCCGCC 848
Query 801 GGAGCTATGTTCCCTAGGTTTTACAGCTTTCCTTCGACGAGTTACAATCTGTATAATCAT 860
|||||||||||||||||||||||||||||||||||||| | ||||| ||| |||||||||
Sbjct 849 GGAGCTATGTTCCCTAGGTTTTACAGCTTTCCTTCGACCAATTACAGTCTTTATAATCAT 908
Query 861 CAGCAGCAACGTCATCATCAC-G-GC-GGTGGTTATAATTACCATCAAATTCCGAGAGAA 917
||||||||||||||||||||| | | |||||||||||||| ||||||||||||||||||
Sbjct 909 CAGCAGCAACGTCATCATCACAGTGGTGGTGGTTATAATTATCATCAAATTCCGAGAGAA 968
Query 918 TTTGGTTATGGTTACTTCGTTAGGTCAGTGGATCAGAGGAATAATCCGGCGGCTGCGGTG 977
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 969 TTTGGTTATGGTTACTTCGTTAGGTCAGTGGATCAGAGGAACAATCCTGCGGCTGCGGTG 1028
Query 978 GCTGATCCGTTGGTGATCGAATCTGTGCCGGTGATGATGCACGGAAGAGCTAATCAGGAA 1037
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1029 GCTGATCCGTTGGTGATTGAATCTGTGCCGGTGATGATGCACGGGAGAGCTAATCAGGAA 1088
Query 1038 CTTGTTGGAACGGCCGGGAAGAGACTGAGGCTTTTTGGAGTTGACATGGAATGCGGCGAG 1097
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1089 CTTGTTGGAACGGCCGGGAAGAGACTGAGGCTTTTTGGAGTTGATATGGAATGCGGCGAG 1148
Query 1098 AGCGGAATGACCAACAGTACGGAGGAGGAATCATCATCTTCCGGTGGAAGTTTGCCACGT 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 AGCGGAATGACCAACAGTACGGAGGAGGAATCATCATCTTCCGGTGGAAGTTTGCCACGT 1208
Query 1158 GGCGGTGGTGGTGGTGGTGCTTCGTCTTCCTCTTTCTTTCAGCTGAGACTTGGGAGTAGC 1217
|| || |||||||||| |||| ||||||||||||||||||||||||||||| || |||
Sbjct 1209 GGAGGCGGTGGTGGTG---CTTCATCTTCCTCTTTCTTTCAGCTGAGACTTGGAAGCAGC 1265
Query 1218 AGTGAAGATGACCACTTCACTAAGAAAGGAAAGTCTTCATTGTCTTTTGATTTGGATCAA 1277
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 AGTGAAGATGATCACTTCACTAAGAAAGGAAAGTCTTCATTGTCTTTTGATTTGGATCAA 1325
Query 1278 TAATAATTATGATGA--AATATTAGTTGGTATTTTAAGAAAAAATAATACACATATATAA 1335
||||||| ||||||| || |||||||||||||||||||||||| || | ||||||||||
Sbjct 1326 TAATAATGATGATGATGAA-ATTAGTTGGTATTTTAAGAAAAAA-AACATACATATATAA 1383
Query 1336 TTCTATATATATGACAACATAATGCATTGATTTCATTATAAATTTATAAGAGAAATGATA 1395
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1384 TTCTATATATATGACAACATAATGCATTGATTTCATTATAAATTTATCGGATAATTGATA 1443
Query 1396 TACAGTATGTTCTAATAATATGCAT 1420
|| | |||||||||||||||||
Sbjct 1444 TA---T--GTTCTAATAATATGCAT 1463
> AT3G61970.1 | Symbols: NGA2 | AP2/B3-like transcriptional factor
family protein | chr3:22951463-22952851 FORWARD LENGTH=1389
Length=1389
Score = 313 bits (169), Expect = 4e-84
Identities = 342/419 (82%), Gaps = 37/419 (9%)
Strand=Plus/Plus
Query 435 gagagagagcaCATGTTCGACAAAGTTGTGACTCCAAGTGATGTCGGAAAACTAAACCGA 494
|||||||| ||||||||||||||||| || || ||||| || || || ||||||||||||
Sbjct 418 GAGAGAGAACACATGTTCGACAAAGTAGTAACACCAAGCGACGTTGGCAAACTAAACCGA 477
Query 495 CTTGTGATCCCAAAGCAACACGCAGAGAGATTCTTCCCTTTAGAT---T-CATCTTCTAA 550
|| |||||||| ||||||||||||||||||| |||||| |||||| | || | | ||
Sbjct 478 CTCGTGATCCCTAAGCAACACGCAGAGAGATACTTCCCATTAGATAACTCCA-CAACAAA 536
Query 551 CG--AG----AAAGGTTTGCTTTTAAACTTCGAAGATCTCACAG-GCAAA-TCATGGAGG 602
|| || |||||||||||| ||||||||||||||| | || | ||| |||||||||
Sbjct 537 CGACAGCAACAAAGGTTTGCTTCTAAACTTCGAAGATC-GA-AGTGGAAACTCATGGAGG 594
Query 603 TTCCGTTACTCTTACTGGAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCAGA 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 595 TTCCGTTACTCTTACTGGAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCCGT 654
Query 663 TTCGTTAAAGACAAAAAGCTTGACGCCGGAGATATTGTCTCTTTTCA-A-AGATGTGTCG 720
|| || |||||||| |||||||| || ||||| || || |||||||| | |||| | | |
Sbjct 655 TTTGTCAAAGACAAGAAGCTTGATGCTGGAGACATCGTTTCTTTTCAGAGAGAT-TCTTG 713
Query 721 GAGATTCAGGAAGAGATAGTCGTTTGTTTATTGATTGGAGGAGACGACCTAA-AGTCCCT 779
| || | |||| | || | ||| || |||||||||||||||||||| | ||||
Sbjct 714 TA-AT--A--AAGACA-AG-C-TTTAC--ATCGATTGGAGGAGACGACCTAAGATTCCC- 762
Query 780 GACCATCCTCATTTCGC----CGCCGGAGCTATGTTCCCTAGGTTTTACAGCTTT-CCT 833
|| |||| |||| || ||||||||||||||||||||||||||||| |||| |||
Sbjct 763 GATCATCATCATCA-GCAATTCGCCGGAGCTATGTTCCCTAGGTTTTACA-CTTTTCCT 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69979559730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5