BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497310
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55460.1 | Symbols: | DNA/RNA-binding protein Kin17, conser... 1066 0.0
AT5G51795.1 | Symbols: | DNA/RNA-binding protein Kin17, conser... 486 2e-136
> AT1G55460.1 | Symbols: | DNA/RNA-binding protein Kin17, conserved
region | chr1:20707478-20709024 FORWARD LENGTH=1547
Length=1547
Score = 1066 bits (577), Expect = 0.0
Identities = 694/750 (93%), Gaps = 9/750 (1%)
Strand=Plus/Plus
Query 547 AGAA-CAAGAAGAGGGAGATTCAGAAACAGATTGAGAGAGCTGCTGAGAAATTGAATGCT 605
|||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 589 AGAAGCAAG-AGAGGGAGATTCAGAGACAGATTGAGAGAGCTGCTGAGAAATTGAATGGT 647
Query 606 CGTGGTGGTGAAGGTGAAAGTAGTGGTAA--A-GAAGTTGTGGAGGAAT-ATGATGATAA 661
|||||||||||||||||| |||||||| | ||||||||||| | || ||||||| |
Sbjct 648 GGTGGTGGTGAAGGTGAAACCAGTGGTAATGATGAAGTTGTGGATG-ATGGTGATGATGA 706
Query 662 GAAGAAGAAAGAGGAAGAATTGAGGTTGAAGAGTGGGGTTAAGGTTGGATTTGCTCTTGG 721
|| ||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 707 GAGGAAGAAAGATGAAGACTTGAGGTTGAAGAGTGGGGTCAAGGTTGGATTTGCTCTTGG 766
Query 722 TGGAGGTGTTAAACAGGTTACTACGGGTAAAGAGAGAGTGGAAAGCTCGAAACTTGTCTT 781
||||||||||||||||||| |||||||||||||||||| |||||||||||||||| | ||
Sbjct 767 TGGAGGTGTTAAACAGGTTGCTACGGGTAAAGAGAGAGGGGAAAGCTCGAAACTTTTGTT 826
Query 782 TGGGGTTgaagagaatgagaaggttcagagaggtgagaagaggaagagaagCGGGGACTC 841
||||| |||||||||||| |||||| ||||||| ||||||||||||||||| ||||||||
Sbjct 827 TGGGGATGAAGAGAATGACAAGGTTGAGAGAGGGGAGAAGAGGAAGAGAAGTGGGGACTC 886
Query 842 CGGGAGGAGCAAGACGGATAAAAGATCAGCTTTGGATGAGTTGATGAAGGAGGAAGAGAA 901
|||||||||| ||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 887 CGGGAGGAGCGAGAAGGAGAGGAGATCAGCTTTGGATGAGTTGATGAAGGAGGAAGAGAA 946
Query 902 GAAGAAGGAGAGGATGAATCGGAAAGATTACTGGTTGTTTGAAGGAATCATTGTGAAGGT 961
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 947 GAAGAAGGAGAGGATGAATCGGAAAGATTACTGGTTGTTCGAAGGGATCATTGTGAAGGT 1006
Query 962 GATGAGTAAGGCTTTGGCACAGAAAGGGTATTATAAGCAAAAGGGTGTTGTGAAGAAAGT 1021
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1007 GATGAGTAAGGCTTTGGCAGAGAAAGGGTATTATAAGCAAAAAGGTGTTGTGAAGAAAGT 1066
Query 1022 GGTTGATAAGTATGTTGGGGAGATCGAAATGCTTGATTCTAAACATGTGTTGAGAGTTGA 1081
| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1067 GATTGATAATTATGTTGGGGAGATCAAAATGCTTGATTCTAAACATGTGTTGAGAGTTGA 1126
Query 1082 TCAGGTGGAGCTAGAGACTGTGCTTCCACAAATAGGAGGGATAGTGAAGATAGTGAATGG 1141
||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1127 TCAAAAGGAGCTAGAGACTGTGCTTCCACAAATTGGAGGGATGGTGAAGATAGTGAATGG 1186
Query 1142 GGCATATCGTCGCTCGAATGCAAGGTTGTTGGGTTTGGATACAGAAAAGTTCTGCGCTAA 1201
|||||||||| | ||||||||||||||||||||| |||||||||| |||||||| |||||
Sbjct 1187 GGCATATCGTGGTTCGAATGCAAGGTTGTTGGGTGTGGATACAGAGAAGTTCTGTGCTAA 1246
Query 1202 AGTGCAAATCGAGAAAAGCGTCTATGATGGAAGAGTCATCA-GATCCATCGAGTACGAGG 1260
|||||| ||||||||| | |||||||||||||||||||||| | ||||| ||||||||||
Sbjct 1247 AGTGCAGATCGAGAAAGGTGTCTATGATGGAAGAGTCATCAAG-TCCATTGAGTACGAGG 1305
Query 1261 ACATATGCAAACTTGCTTAGTTATATCTTT 1290
||||||||||||||||||||||||||||||
Sbjct 1306 ACATATGCAAACTTGCTTAGTTATATCTTT 1335
Score = 869 bits (470), Expect = 0.0
Identities = 529/558 (95%), Gaps = 1/558 (0%)
Strand=Plus/Plus
Query 2 TCGATTAGTGGTTGTTACCGGAGAAACCCTAGATTTCAATTCGCAAGACCTTGATTTTGT 61
||||| ||||||||||||| |||||||||||||||||||||| ||| ||||| |||||||
Sbjct 8 TCGATCAGTGGTTGTTACCTGAGAAACCCTAGATTTCAATTCCCAACACCTTAATTTTGT 67
Query 62 TCTACAAACCCACGAAGAATCGATGGGTAAGAACGATTTTCTAACCCCGAAGGCGATTGC 121
|| ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 68 TCGACAAACCCAAGAAGATTCGATGGGTAAGAACGATTTTCTAACCCCAAAGGCGATTGC 127
Query 122 GAATCAAATCAAAGCCAAAGGACTTCAAAAGCTTCGATGGTATTGTCAGATGTGTCAGAA 181
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 GAATCGAATTAAAGCCAAAGGACTTCAAAAGCTTCGATGGTATTGTCAGATGTGTCAGAA 187
Query 182 GCAATGCCGAGATGAGAATGGATTCAAGTGTCATTGTATGAGCGAATCTCACCAGAGGCA 241
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 ACAATGCCGAGACGAGAATGGATTCAAGTGTCATTGTATGAGCGAATCTCACCAGAGGCA 247
Query 242 GATGCAAGTTTTTGGGCAGAATCCAACTCGTGTTGTCGATGGTTACTCTGAAGAATTCGA 301
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 248 GATGCAAGTTTTTGGGCAGAATCCGACTCGTGTTGTCGATGGTTACTCTGAAGAATTCGA 307
Query 302 GCAGACGTTTCTCGATCTGATGCGGCGGAGCCACCGCTTCTCTCGTATCGCCGCCACTGT 361
|||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||
Sbjct 308 GCAGACGTTTCTCGATCTGATGAGGCGGAGCCACCGTTTCTCTCGTATCGCTGCCACTGT 367
Query 362 TGTTTACAATGAGTATATCAACGATAGGCATCATGTTCATATGAATTCCACGGAGTGGGC 421
||| |||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||
Sbjct 368 TGTCTACAATGAGTATATTAACGATAGACATCATGTTCACATGAATTCGACGGAGTGGGC 427
Query 422 GACGTTGACGGAGTTCATCAAGTACCTTGGGAAAACAGGTAAGTGTAAGGTTGAAGAAAC 481
||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 428 GACGTTGACGGAGTTTATCAAGCATCTTGGGAAAACTGGTAAGTGTAAGGTTGAAGAAAC 487
Query 482 TCCTAAAGGTTGGTTTATTACTTATATAGATAGAGATTCGGAGACTTTGTTTAAGGAGAG 541
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 488 TCCTAAAGGTTGGTTTATTACTTATATAGATAGAGATTCTGAGACTTTGTTTAAGGAGAG 547
Query 542 GTTGAAGAACAAGAAGAG 559
||||||||| |||| |||
Sbjct 548 GTTGAAGAATAAGA-GAG 564
> AT5G51795.1 | Symbols: | DNA/RNA-binding protein Kin17, conserved
region | chr5:21043083-21044194 REVERSE LENGTH=1044
Length=1044
Score = 486 bits (263), Expect = 2e-136
Identities = 343/381 (90%), Gaps = 7/381 (2%)
Strand=Plus/Plus
Query 80 ATCGATGGGTAAGAACGAT-TTTCTAACCCCGAAGGCGATTG-CGAATCAAATCAAAGCC 137
||||||||| ||||||||| | | ||||||||||||||| || |||||| ||| |||||
Sbjct 46 ATCGATGGGCAAGAACGATATGT-TAACCCCGAAGGCGA-TGTCGAATCGAATAAAAGCG 103
Query 138 AAAGGACTTCAAAAGCTTCGATGGTATTGTCAGATGTGTCAGAAGCAATGCCGAGATGAG 197
|||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| |||
Sbjct 104 AAAGGACTTCAAAAGCTTCGATGGTATT-TCAGATGTGTGAGAAACAATGCCGAGACGAG 162
Query 198 AATGGATTCAAGTGTCATTGTATGAGCGAATCTCACCAGAGGCAGATGCAAGTTTTTGGG 257
||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 163 AATGGATTCAAGTGTCATTGTATGAGCGAATCTCACCAGCGTCAGATGCAAGTTTT-GGG 221
Query 258 -CAGAATCCAACTCGTGTTGTCGATGGTTACTCTGAAGAATTCGAGCAGACGTTTCTCGA 316
|||||||| ||||||||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct 222 TCAGAATCCGACTCGTGTTGTTAATGGTTACTCTCAAGAGTTCGAGCAGACGTTTCTCGA 281
Query 317 TCTGATGCGGCGGAGCCACCGCTTCTCTCGTATCGCCGCCACTGTTGTTTACAATGAGTA 376
||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 282 TCTGATGCGGCGGAGCCACCGATTCTCTCGTGTCGCCGCCACTGTTGTCTACAATGAGTA 341
Query 377 TATCAACGATAGGCATCATGTTCATATGAATTCCACGGAGTGGGCGACGTTGACGGAGTT 436
||| |||||||| | |||||||||||||||||| || ||||||| || ||||| |||||
Sbjct 342 TATTAACGATAGACTTCATGTTCATATGAATTCGACAAAGTGGGCAACTTTGACTGAGTT 401
Query 437 CATCAAGTACCTTGGGAAAAC 457
|| ||||| || ||||||||
Sbjct 402 TATAAAGTATCTAGGGAAAAC 422
Score = 388 bits (210), Expect = 5e-107
Identities = 257/280 (92%), Gaps = 2/280 (1%)
Strand=Plus/Plus
Query 1002 AAGGGTGTTGTGAAGAAAGTGGTTGATAAGTATGTTGGGGAGATCGAAATGCTTGATTCT 1061
|||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |||
Sbjct 766 AAGGGTGTTGTGAAGAGAGTGATTGATAAGTATGTTGGGGAGATCGAGATGCTTGAATCT 825
Query 1062 AAACATGTGTTGAGAGTTGATCAGGTGGAGCTAGAGACTGTGCTTCCACAAATAGGAGGG 1121
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 826 AAGCATGTGTTGAGAGTTGATCAGGTGGAGCTAAAGACTGTGCTTCCACAAATAGGAGGG 885
Query 1122 ATAGTGAAGATAGTGAATGGGGCATATCGTCGCTCGAATGCAAGGTTGTTGGGTTTGGAT 1181
|| |||||||||||||| |||||||||||| | |||||| |||||||||||| |||||||
Sbjct 886 ATGGTGAAGATAGTGAACGGGGCATATCGTGGTTCGAATACAAGGTTGTTGGATTTGGAT 945
Query 1182 ACAGAAAAGTTCTGCGCTAAAGTGCAAATCGAGAAAAGCGTCTATGATGGAAGAGTCATC 1241
|| || ||||| || ||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 946 ACGGAGAAGTTTTGTGCTAAAGTGCAGATCGAGAAAGGTGTCTATGATGGAAGAGTCATC 1005
Query 1242 A-GATCCATCGAGTACGAGGACATATGCAAACTTGCTTAG 1280
| | ||||| |||||||||||||| |||||||||||||||
Sbjct 1006 AAG-TCCATTGAGTACGAGGACATTTGCAAACTTGCTTAG 1044
Score = 169 bits (91), Expect = 8e-41
Identities = 95/97 (98%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 864 AGATCAGCTTTGGATGAGTTGATGAAGGAGGAAGAGAAGAAGAAGGAGAGGATGAATCGG 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 673 AGATCAGCTTTGGATGAGTTGATGAAGGAGGAAGAGAAGAAGAAGGAGAGGATGAATAGG 732
Query 924 AAAGATTACTGGTTGTTTGAAGGAATCATTGTGAAGG 960
||||| |||||||||||||||||||||||||||||||
Sbjct 733 AAAGACTACTGGTTGTTTGAAGGAATCATTGTGAAGG 769
Score = 97.1 bits (52), Expect = 4e-19
Identities = 64/70 (91%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 761 GGAAAGCTCGAAACTTGTCTTTGGGGTTgaagagaatgagaaggttcagagaggtgagaa 820
|||||||||||||||||| ||||||| |||||||||||| |||||| ||||||| || ||
Sbjct 606 GGAAAGCTCGAAACTTGTGTTTGGGGATGAAGAGAATGACAAGGTTGAGAGAGGGGATAA 665
Query 821 gaggaagaga 830
||||||||||
Sbjct 666 GAGGAAGAGA 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63453488880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5