BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497312
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45420.1 | Symbols: | Duplicated homeodomain-like superfami... 1646 0.0
> AT5G45420.1 | Symbols: | Duplicated homeodomain-like superfamily
protein | chr5:18404069-18406606 REVERSE LENGTH=1292
Length=1292
Score = 1646 bits (891), Expect = 0.0
Identities = 1120/1227 (91%), Gaps = 30/1227 (2%)
Strand=Plus/Plus
Query 1 GAGCAACAATGGAGTTTTTCGACGAAGATAGGCCTAGATTCGTCTTCCAATCTCGTCCTT 60
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 2 GAGCAACAATGGATTTTTTCGACGAAGACAGGCCTAGATTCGTTTTCCAATCTCGTCCTT 61
Query 61 CTTCTTCTCACACGATGGAGGAAGAAGAAGAACCTAGAATCCCTAACAAGATCTTCATTT 120
|||||||||||||| |||||||||||||||| ||||||||||||||||| | |||||||
Sbjct 62 CTTCTTCTCACACGGCGGAGGAAGAAGAAGAAGCTAGAATCCCTAACAAGCTTTTCATTT 121
Query 121 CGATTTCCGTCTCAATCTCTCTCATCATATTATCTCTCTCCTTCTTCTACTTCGAATCTG 180
| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CAATCTCCGTCTCAATCTCCCTCATCATATTATCTCTCTCCTTCTTCTACTTCGAATCTG 181
Query 181 AGCCTGCTAAATCGCTTCTCTTATGGCTTTCCCTCTCCTTCCTCGTTGGTCCTTTCGCTC 240
| ||||| |||||||| || ||||||||||||||||| |||||||| |||||||||||||
Sbjct 182 AACCTGCCAAATCGCTACTATTATGGCTTTCCCTCTCTTTCCTCGTCGGTCCTTTCGCTC 241
Query 241 CTAGTTCGCTCACCGCAGGTAAGATTCGCGTCGGTTATGGTCAGATCTTGGAGCCAGAGC 300
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 242 CTAGCTCGCTCACCGGAGGTAAGATTCGCGTCGGTTATGGTCAGATCTTGGAGCCAGAAC 301
Query 301 AGATTCACGATGAGTCATCGACGGATAACGAACGTGAATCGAGGAGAAAATCGGTGAATA 360
||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 302 AGATTCACGATGAGTCATCCACGGATAACGAACGTGAATCCAGGAGGAAATCGGTGAATA 361
Query 361 AACGATCTAAAGGAACGACGAAGAACGATAATCCACCGGAAAATGCTTCTTCGGTGACGG 420
| ||||||||||| ||||||||| ||||||||| ||||||||||||||| ||||||| |
Sbjct 362 AGCGATCTAAAGGTTCGACGAAGAGCGATAATCCGCCGGAAAATGCTTCTGCGGTGACTG 421
Query 421 AGGTTTCGAGAAAAGTGGCGATTCCGCAGTCTAAAGAGAGTGGATCTGTGAATGAAACCA 480
| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |
Sbjct 422 AAGTTTCGAGGAAAGTGGTGATTCCGCAGTCTAAGGAGAGTGGATCTGTGAATGAAACTA 481
Query 481 AAGATTGGAGTG-TAGAAGAAATCGAGATTTTGAAGAAGCAGTTGATAAAGCATCCAGCT 539
||||||||| || | ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 482 AAGATTGGACTGCT-GAAGAGATCGAGATTTTGAAGAAGCAGTTGATTAAGCATCCAGCT 540
Query 540 GGTAAGCCTGGGAGATGGGAAACGGTGGCTTCGGCGTTCGGAGGAAGGTACAAGACAGAG 599
||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 541 GGTAAACCTGGGAGATGGGAGACGGTGGCTTCAGCGTTCGGAGGAAGATACAAGACAGAG 600
Query 600 AATGTGATTAAGAAGGCGAAAGAGATTGGTGAAAAGAAAATCTATGAAAGTGATGATTAC 659
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 601 AATGTGATTAAGAAGGCGAAAGAGATAGGTGAGAAGAAAATCTATGAGAGTGATGATTAC 660
Query 660 GCACAGTTTTTGAAGAATAGGAAAGCTTCGGATCCTAGATTGGTTGATGAAAACGCTGAG 719
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 661 GCTCAGTTTTTAAAGAATAGGAAAGCTTCAGATCCTAGATTGGTTGATGAAAACGAAGAG 720
Query 720 AATTCTGGAGCTGGTGGAGATGAGGAAGGTAATAAGGAGATTTGGAGTAATGGAGAAGAC 779
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 721 AATTCTGGAGCTGGTGGAGATGCGGAAGGTACTAAGGAGATTTGGAGTAATGGAGAAGAC 780
Query 780 ATTGCATTGCTCAATGCTTTAAAAGCTTTTCCTAAGGAAGCAGCTATGAGATGGGAGAAG 839
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 ATTGCATTGCTCAATGCTTTAAAAGCTTTTCCTAAGGAGGCAGCTATGAGATGGGAGAAG 840
Query 840 ATTGCAGCTGCAGTACCTGGGAAGTCGAAGGCAGCTTGTATGAAGAGAGTTACTGAGCTT 899
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 841 ATTGCAGCTGCAGTACCTGGGAAGTCGAAAGCAGCTTGTATGAAGAGAGTTACTGAGCTT 900
Query 900 AAAAAAGGGTTTCGGAGCTCGAAAACTCCAGCCAATTAGCTAGAG-AGGATCCAGT--GA 956
|||||||||||||||||||||||||||||||| ||||| |||||| | ||| || |
Sbjct 901 AAAAAAGGGTTTCGGAGCTCGAAAACTCCAGCTAATTAACTAGAGGAC-ATCT-GTACGG 958
Query 957 GAAGTAGGGCAAATGCCAGGAGAGGGAGAACAATTTTGTGGTTGCTGCTTGAGATTATTG 1016
|| || ||||||| |||||||||| | |||||||||||| |||||||||||||||||||
Sbjct 959 GAT-TAAGGCAAATACCAGGAGAGGAAAAACAATTTTGTGTTTGCTGCTTGAGATTATTG 1017
Query 1017 CTACAAGGCCCAAAAGTAATGAAGAGAGTTATGCAGGAAATTTCTTTTAGAGA------- 1069
|||||| ||||||| ||| |||| |||||| |||||||| |||||||||||||
Sbjct 1018 CTACAACGCCCAAA-GTAGTGAATAGAGTTCTGCAGGAAGTTTCTTTTAGAGAGAAGAAA 1076
Query 1070 --------TCTCAATATGCCAAAGAAATTAACATATGTAGATTTATGAGTTCTTCTTTAC 1121
|||||||||||||||||| |||||||| || || ||||||||||||||||
Sbjct 1077 AGAAAGCATCTCAATATGCCAAAGAATTTAACATAA--AG-TT-ATGAGTTCTTCTTTAC 1132
Query 1122 TTCAAGCTTTTATTCGAATTACAAGACTTGAGCATCTGTGTATCCTTTCCC-AGAGAGCA 1180
|||||||||| |||||||||||||||||||||||||||||||||| |||| | ||||||
Sbjct 1133 TTCAAGCTTTGATTCGAATTACAAGACTTGAGCATCTGTGTATCCCCTCCCCAAAGAGCA 1192
Query 1181 CCTATTT-ATTACTAGGGAAATTTATA 1206
||||||| |||||||||||||| ||||
Sbjct 1193 CCTATTTTATTACTAGGGAAATATATA 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60993662175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5