BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497317
Length=1987
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52510.1 | Symbols: SCL8 | SCARECROW-like 8 | chr5:21307049-... 2126 0.0
> AT5G52510.1 | Symbols: SCL8 | SCARECROW-like 8 | chr5:21307049-21309302
FORWARD LENGTH=2254
Length=2254
Score = 2126 bits (1151), Expect = 0.0
Identities = 1445/1580 (91%), Gaps = 47/1580 (3%)
Strand=Plus/Plus
Query 426 AACCGGATTCATGAATCGGAGAACATGTTGAATAGTTTAAGAGAGCTTGAGAAACAGCTT 485
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 AACCGGGTTCATGAATCGGAGAACATGTTGAATAGTTTAAGAGAGCTTGAGAAACAGCTT 756
Query 486 TTAGATGATGACGATGAGAGTGGTGGTGATGATGACGTGTCAGTTATCACAAATTCAAAT 545
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 757 TTAGATGATGACGATGAGAGTGGTGGTGATGATGACGTGTCAGTTATAACAAATTCAAAT 816
Query 546 TCCGATTGGATTCAAAATCTTGTGACTCCGAACCCGAACCCGAACCCGAACCCGGTTTTG 605
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 817 TCCGATTGGATTCAAAATCTCGTGACT------CCGAACCCGAACCCGAACCCGGTTTTG 870
Query 606 TCTTTTTCACCGA---CTTCTTCTTCGTCTTCTTCACCTTCTACAGCTTCGACGACGACA 662
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 871 TCTTTTTCACCGAGCTCTTCTTCTTCGTCTTCTTCGCCTTCTACAGCTTCGACGACGACA 930
Query 663 TCGGTATGTTCAAGGCAAACGGTTATGGAAATCGCGACGGCGATCGCGGAAGGGAAAACG 722
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 TCGGTATGTTCTAGGCAAACGGTTATGGAAATCGCGACGGCGATCGCGGAAGGGAAAACA 990
Query 723 GAGATAGCGACGGAGATTTTGGCGCGTGTTTCTCAGACGCCGAATCTTGAGAGGAATTCA 782
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 991 GAGATAGCGACGGAGATTTTGGCGCGTGTTTCTCAAACGCCTAATCTTGAGAGGAATTCA 1050
Query 783 GAGGAGAAGCTGGTTGATTTCATGGTGACGGCGCTTCGATCGCGGATTAATCAGGCTGAG 842
||||||||||| ||||||||||||||| | |||||||||| | | | | |
Sbjct 1051 GAGGAGAAGCTTGTTGATTTCATGGTGGCTGCGCTTCGAT--C-G-------A----G-G 1095
Query 843 AGTCTAGCTTCTCCGGCGACGGAATTGTATGGGAAGGAGCATTTAATCTCGACTCAATTG 902
| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 A---TAGCTTCTCCAGTGACGGAATTGTATGGGAAGGAGCATTTAATCTCGACTCAATTG 1152
Query 903 CTCAACGAGCTCTCTCCTTGTTACAAACTCGGTTTC-ACGGCGGCGAATCTCGCCATTCT 961
||| |||||||||||||||||| ||||||||||||| | ||| |||||||||||||||||
Sbjct 1153 CTCTACGAGCTCTCTCCTTGTTTCAAACTCGGTTTCGA-GGCCGCGAATCTCGCCATTCT 1211
Query 962 CAACGCCGCCGGTAACAACGACGCAGGGATGATGATGTTGCACGTTATCGATTTCGATAT 1021
| ||||||||| ||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 1212 CGACGCCGCCGATAACAACGACGGTGGAATGATGATACCGCACGTTATCGATTTCGATAT 1271
Query 1022 CGGAGAAGGTGGACAATATGTTAACCTTCTCCAAACACTCTCCACGCGCCGGAATGGTAA 1081
|||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||
Sbjct 1272 CGGAGAAGGTGGACAATACGTTAACCTTCTCCGTACATTATCCACGCGCCGGAATGGTAA 1331
Query 1082 GAA-TCAGAATCAGAATTCTCCGGTGGTTAAGATCACAGCCGTGACGAACAACGTCTACG 1140
|| ||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||||
Sbjct 1332 -AAGTCAGAGTCAGAATTCTCCGGTGGTTAAGATCACCGCCGTGGCGAACAACGTTTACG 1390
Query 1141 GATTTTTGGTCGATGGCGGTGGAGAAGAGAGGTTGAAAGTCGTCGGAGATCTGTTGAGCC 1200
||| ||| ||||||| |||||||||||||||||| |||| |||||||||| |||||||||
Sbjct 1391 GATGTTTAGTCGATGACGGTGGAGAAGAGAGGTTAAAAGCCGTCGGAGATTTGTTGAGCC 1450
Query 1201 AACTCGGTAATCGACTCGGTATCTCCGTGAGTTTCAACGTGGTGGCGAGTTTACGACTCG 1260
|||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1451 AACTCGGTGATCGACTCGGTATCTCCGTAAGTTTCAACGTGGTGACGAGTTTACGACTCG 1510
Query 1261 GTGATCTGAGTCGTGAATCGCTCGGGTGTGATCCCGACGAGCCGTTGGCCGTGAACTTAG 1320
||||||||| ||||||||| ||||||||||||||||||||| | ||||| ||||||||||
Sbjct 1511 GTGATCTGAATCGTGAATCTCTCGGGTGTGATCCCGACGAGACTTTGGCTGTGAACTTAG 1570
Query 1321 CTTTCAAGCTTTATCGTGTTCCCGACGAAAGCGTATGCACAGAGAATCCGAGAGACGAGC 1380
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 1571 CTTTCAAGCTTTATCGTGTTCCCGACGAAAGCGTATGCACGGAGAATCCAAGAGACGAAC 1630
Query 1381 TTCTCCGGCGCGTGAAGGGACTTAAGCCGCGCGTGGTGACTTTAGTGGAACAAGAAATGA 1440
||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||
Sbjct 1631 TTCTCCGGCGCGTGAAGGGACTTAAACCGCGCGTGGTTACTCTAGTGGAGCAAGAAATGA 1690
Query 1441 ATTCTAATACGGCACCGTTTTTAGGGCGAGTGAGTGAGTCATGCGCGTGTTACGGTGCAT 1500
|||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1691 ATTCGAATACGGCGCCGTTTTTAGGGAGAGTGAGTGAGTCATGCGCGTGTTACGGTGCGT 1750
Query 1501 TGCTTGACTCGGTCGAGTCGACCGTTCCTAGTTTGAATTCGGACCGCGTCAAGGTCGAGG 1560
||||||| ||||||||||| || ||||||||| |||||| ||||| | ||| || ||||
Sbjct 1751 TGCTTGAGTCGGTCGAGTCTACGGTTCCTAGTACGAATTCCGACCGTGCCAAAGTTGAGG 1810
Query 1561 AAGGAATTGGCCGGAAGCTAATAAACGCGGTGGCGTGCGAAGGAATCGATCGGATTGAGC 1620
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 1811 AAGGAATTGGCCGGAAGCTAGTAAACGCGGTGGCGTGCGAAGGAATCGATCGTATAGAGC 1870
Query 1621 GGTGCGAGGTTTTCGGGAAATGGCGAATGCGGATGAGCATGGCTGGGTTCGAGTTAATGC 1680
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1871 GGTGCGAGGTGTTCGGGAAATGGCGAATGCGGATGAGCATGGCTGGGTTTGAGTTAATGC 1930
Query 1681 CATTGAGTGAGAAGATAGCTGA-CCGACTCAATA-AC--GGAAACCTAGCT-CACCCGGG 1735
||||||||||||||||||| || ||| | || | | ||||||| || | ||||||||
Sbjct 1931 CATTGAGTGAGAAGATAGCGGAGTCGA-TGAAGAGTCGTGGAAACCGAG-TCCACCCGGG 1988
Query 1736 CTTTACCGTTAAAGAAGATAACGGAGGTGTGTGCTTTGGTTGGATGGGACGGACTCTCGC 1795
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 1989 CTTTACCGTTAAAGAAGATAACGGAGGTGTGTGCTTTGGTTGGATGGGACGGGCACTCAC 2048
Query 1796 TGTCGCATCCGCTTGGCGTTAA-TT-TCACACTCtttttttt-tt-tt-ttattaccata 1850
|||||||||||||||||||||| || ||||||||||||||| || || |||||||||||
Sbjct 2049 TGTCGCATCCGCTTGGCGTTAACTTCACACACTCTTTTTTTTCTTCTTATTATTACCATA 2108
Query 1851 ttattattatttttcgaggattattctgataatattatcattgtgattttCCATTTCGAA 1910
||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2109 TTATTATTAATTTTCGA-GATTATTCTGATATTATTATCATTGTGATTTTCCATTTCGAA 2167
Query 1911 AAGTGTAGGAATCTTATGTAACAAAGaaaaaaaaa---CTTTTATATTTTACTAATAATA 1967
||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||
Sbjct 2168 AAGTGTAGGAATCTTATGTAACAAAGAAAAAAAAAAGACTTTTATGTTTTTCTAATAATA 2227
Query 1968 AAAGAAAGAATGATTGGGTT 1987
||||||||| ||||||||||
Sbjct 2228 AAAGAAAGAGTGATTGGGTT 2247
Score = 436 bits (236), Expect = 3e-121
Identities = 379/440 (86%), Gaps = 41/440 (9%)
Strand=Plus/Plus
Query 1 ATTTCTCAGAGTATCTAAT-T-TCTCTCTTCTCTCTTTCCATATTATCATGCGTTTC--- 55
||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||
Sbjct 26 ATTTCTCAGAGTATCTAATCTCTCTCTCTTCTCTCGTTCCATATTATCATGCGTTTCATA 85
Query 56 A-T---T--A--TTTGGTAAt-t--t-ttttCTTTCTG-AGCTTTTGAGAG---AATAAA 99
| | | | ||| | ||| | | | ||||||||| |||||||||||| ||||||
Sbjct 86 ATTCAGTAAATTTTTTGAAATCTGATCTGTTCTTTCTGAAGCTTTTGAGAGAATAATAAA 145
Query 100 AAATGGAATCTGGTTTCTCCGGCGGCGGTGGTGGGTCGGA-TTTT-C-ACGGTGGTGGTG 156
||||||||||||||||||||||||| |||||||||||||| |||| | |||||||||||
Sbjct 146 AAATGGAATCTGGTTTCTCCGGCGGTGGTGGTGGGTCGGATTTTTACGGCGGTGGTGGTG 205
Query 157 GTAGATCTATACCTGGAGGTCCCGGAACTGTAATCAACGTTGGTAATAATAATCCTCA-A 215
|||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| |
Sbjct 206 GTAGATCTATACCTGGAGGTCCAGGAACTGTTATCAACGTCGGTAACAATAATCCTCAGA 265
Query 216 CCGACGTATAGAAACCAAATTCCTGGAATCTTCCTTGATCAGATCGGAAACAGAGTCTCC 275
| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 266 C-GACGTATAGAAACCAGATTCCTGGAATCTTCTTTGATCAGATCGGAAACAGAGTCGCC 324
Query 276 GCCGGTAATGGATTCGCCGGGAAACGTACTTTAGCAGATTTTCAAGCGGCTCAGCAATAT 335
| ||||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||
Sbjct 325 GGCGGTAATGGATTCTCCGGGAAAAGGACTTTAGCAGATTTTCAAGCGGCTCAGCAACAT 384
Query 336 caacagcaacagcaacagcaacagcaacaacaacaacCGTTTTATAATCAAGCAGCTCTC 395
||||| | || | || | || | ||||||| | |||||||| |||||||||||||
Sbjct 385 CAACA--A-CA--A-CA--A-CA--A-CAACAAC--C-GTTTTATAGTCAAGCAGCTCTC 429
Query 396 AACGCTTTTCTTTTAAGGTC 415
||||||||||||| ||||||
Sbjct 430 AACGCTTTTCTTTCAAGGTC 449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98443268745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5