BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497318
Length=375
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62400.2 | Symbols: | unknown protein; Has 4 Blast hits to ... 453 5e-127
> AT3G62400.2 | Symbols: | unknown protein; Has 4 Blast hits to
4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:23089641-23090737 FORWARD LENGTH=517
Length=517
Score = 453 bits (245), Expect = 5e-127
Identities = 282/299 (94%), Gaps = 6/299 (2%)
Strand=Plus/Plus
Query 79 GTTGAGAAGAAATGGCAGGACACAAGGTCGCGCATGCCACATTGAAAGGCCCAAGTGTTG 138
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 64 GTTGAGAAGAAATGGCAGGACACAAGGTTGCGCATGCCACATTGAAAGGCCCGAGTGTTG 123
Query 139 TGAAGGAATTGATTATTGGTTTGACACTTGGTTTAGCTGCTGGTGGTCTCTGGAAGATGC 198
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 124 TCAAGGAATTGATTATTGGTTTGACGCTTGGTTTAGCTGCTGGTGGTCTCTGGAAGATGC 183
Query 199 ACCATTGGAATGAGCAGAGGAAAACCAGAACTTTCTATGATTTGCTTGAAAGAGGTGAGA 258
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 184 ACCATTGGAATGAGCAGAGGAAAACTAGAACTTTCTATGATTTGCTTGAGAGAGGTGAGA 243
Query 259 TCAGTGTTGTCGCCGCTGAAGAGTGAATGA-AATGCCTCTCTCTCACTCTCACTATATGT 317
|| ||||||||||| |||||||||||||| ||||||||||||||||||||| || ||
Sbjct 244 TCGGTGTTGTCGCCTCTGAAGAGTGAATGGGAATGCCTCTCTCTCACTCTCA--AT--GT 299
Query 318 TGTTGGCTTGATTTTTCTGTTTT-ATTGTTTCTTGAGATCTCAGATAAGTTACCTAAGA 375
|||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 300 TGTTGGCTCGATTTTTCTGTTTTTATGGTTTCTTGAGATCTCAGATAAGTTACCTAAGA 358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17643979899
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5