BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497319
Length=1659
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62390.1 | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | c... 2534 0.0
> AT3G62390.1 | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 |
chr3:23087017-23089206 REVERSE LENGTH=1750
Length=1750
Score = 2534 bits (1372), Expect = 0.0
Identities = 1558/1646 (95%), Gaps = 20/1646 (1%)
Strand=Plus/Plus
Query 20 aaGATGGAGAGACAAAGGAGCATCTCTGTGAAGTCCACGAGAGTCTTAGCATTCATCATC 79
||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 62 AAGATGGAGAGACAAAGAAGTTTCTCTGTGAAGTCCACAAGAGTCTTAGCATTCATCATC 121
Query 80 ACAACAATCTCTTCCGCCATTGTTTTCTTCACTTTCTTCTCCTCTTCCTTAATCAAATCT 139
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 122 ACAATAATCTCTTCCGCCATTGTTTTCTTCACTTTCTTCTCCTCTTCCTTACTCAAATCT 181
Query 140 AACTCTTCTCTTTACCCAACACCAGACTCTAACTTCCAGATCGATTTAAGTCCTATAGCC 199
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||
Sbjct 182 AACTCTTCTCTTTACCCAACACCAGAAGCTAACTTCCAGATCGATTTAAGCCCTATTGCC 241
Query 200 GCCATTTCCGATTCTTCAGTTTCTCCTCAAGCAAGCCCGGTTCCGATCTCTACCCATTTC 259
||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct 242 GCCATTTCCGATTCTTCAGTTTCTCCTCAAGCAAGTCCGATTCTGATCTCTACCCATTTC 301
Query 260 AATTCGCCCGAAAACACTTCCGGGTCTTCAAAAATTTCAGTTTTTGAGCAGAAGATTCGC 319
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 302 AATTCACCCGAAAACACTTCCGGGTCTTCAAAAATTTCTGTTTTTGAGCAGAAGATTAGC 361
Query 320 GGCGAGAGTTTGGTTAAGGAAGTTAGGGAAATTGCTAATTTAACTTCGATTAAAGTGGTT 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 362 GGCGAGAGTTTGGTTAAGGAAGTTAGGGAAATTGCTAATTTAACTTCGATTAAAGTGATT 421
Query 380 GAACTTTCGAGCAACAATGGTG-AG--GAGAAGACAAAGAAGAGAATCGAAGAGTGTGAT 436
|||||| ||||||||||||||| || |||||||| |||||||||||||||| ||||||
Sbjct 422 GAACTTCCGAGCAACAATGGTGAAGATAAGAAGACAGAGAAGAGAATCGAAGAATGTGAT 481
Query 437 GTTACGAAAGGGAAGTGGGTTTACGATAGCGACTATCCATTGTACACAAATGCGTCTTGT 496
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 482 GTTACGAAAGGGAAGTGGGTTTACGATAGTGATTATCCATTGTACACAAATGCGTCTTGT 541
Query 497 CCTTTTATCGATGAAGGATTTAGTTGTCAAAGCAATGGACGATTGAATCTTAATTACATG 556
||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 542 CCTTTTATCGATGAAGGATTTGGTTGTCAAAGCAATGGAAGATTGGATCTTAATTACATG 601
Query 557 AATTGGAGATGGGAGCCTCAAGATTGTGATGCTCCCAGGTTCAATGCTACAAAAATGCTG 616
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||
Sbjct 602 AATTGGAGATGGGAGCCTCAGGATTGTCATGCTCCCAGGTTCAATGCTACAAAGATGCTG 661
Query 617 GAAATGATAAGAGGGAAGAGGCTAGTGTTCGTTGGAGATTCAATTAATAGGAACCAGTGG 676
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 662 GAAATGATTAGAGGCAAGAGGCTAGTGTTCGTTGGAGATTCAATTAATAGGAACCAATGG 721
Query 677 GAATCTATGCTTTGTTTGTTGTTTCAAGCTGTTAAAGATCCCAAGAGAGTCTACGAAATC 736
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 722 GAATCTATGCTTTGTTTGTTGTTTCAAGCTGTTAAAGATCCCAAGAGAGTATACGAAA-C 780
Query 737 -CACAACCGAAGAATCACAAAAGAGAAAGGGAATTACAGCTTCCGTTTCGTGGATTATAA 795
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 781 GCACAACCGAAGAATCACCAAAGAGAAAGGGAATTATAGCTTCCGTTTCGTGGATTATAA 840
Query 796 ATGCACTGTGGAATTCTATGTTACTCATTTCTTGGTTCGTGAGGGTAGAGCAAGAATAGG 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATGCACTGTGGAATTCTATGTTACTCATTTCTTGGTTCGTGAGGGTAGAGCAAGAATAGG 900
Query 856 AAAGAAGAGAAGAGAAACACTTAGAATCGATGCTATGGATCGAACCTCTTCGAGATGGAA 915
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 901 AAAGAAGCGAAGAGAAACACTTAGAATCGATGCTATGGATCGAACCTCTTCCAGATGGAA 960
Query 916 AGGTGCTAATATCTTAGTGTTCAATACAGCTCATTGGTGGTCTCATTACAAAACCAAATC 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGGTGCTAATATCTTAGTGTTCAATACAGCTCATTGGTGGTCTCATTACAAAACCAAATC 1020
Query 976 GGGGGTCAACTATTACCAAGAAGGAGACCAGATTCATCCCAAGCTCGATGTATCAACCGC 1035
||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1021 AGGGGTCAACTACTACCAAGAAGGAGACCTGATTCATCCCAAACTCGATGTATCAACCGC 1080
Query 1036 TTTCAAGAAAGCTTTGCAGACTTGGTCATCATGGGTTGACAAAAATGTCGACCCGAAGAA 1095
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1081 TTTTAAGAAAGCTTTGCAGACTTGGTCATCATGGGTTGACAAAAATGTCGATCCGAAGAA 1140
Query 1096 AACTCGCGTTTTCTTTAGAAGCGCTGCACCTTCTCATTTCAGTGGAGGAGAATGGAACTC 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AACTCGCGTTTTCTTTAGAAGCGCTGCACCTTCTCATTTCAGTGGAGGAGAATGGAACTC 1200
Query 1156 AGGAGGTCACTGCAGAGAAGCCAACATGCCGTTGAACCAAACCTTCAAACCGAGTTACTC 1215
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1201 AGGAGGTCATTGCAGAGAAGCCAACATGCCGTTGAACCAAACCTTCAAACCAAGTTACTC 1260
Query 1216 GAGCAAAAAGTCCATTGTTGAGGAAGTACTGAAGCAGATGAGAACACCGGTAACCCTCTT 1275
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1261 GAGCAAAAAGTCCATTGTTGAGGACGTACTGAAGCAAATGAGAACACCGGTAACCCTCTT 1320
Query 1276 GAACGTTAGCGGTTTATCTCAGTACAGAATTGACGCCCACCCGTCTATTTACGGAACAAA 1335
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1321 GAACGTTAGCGGTTTATCTCAGTACAGAATTGACGCCCATCCTTCTATTTACGGAACAAA 1380
Query 1336 ACCCGAAAACCGGCGTTCAAAAGCTGTCCAAGATTGCAGTCATTGGTGTCTCCCTGGTGT 1395
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1381 ACCCGAAAACCGGCGTTCAAGAGCTGTCCAAGATTGCAGCCATTGGTGTCTCCCTGGTGT 1440
Query 1396 TCCTGATACATGGAACCACTTCCTTTACCTCCATTTGCTCCATAAACGATAAATAGAGTT 1455
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1441 TCCTGATACTTGGAACCACTTCCTTTACCTCCATTTGCTCCATAAACGATAAATACAGTT 1500
Query 1456 AACAAACTAATCATAGCTCCAGTTACTTGTTCAGAATTGTTTGTTTAATGTAGGGATGG- 1514
| ||||||||||| |||||||||||| |||||| || |||||||||||||||| || |
Sbjct 1501 A-CAAACTAATCAAAGCTCCAGTTACGTGTTCAAAA--GTTTGTTTAATGTAGGCATTGC 1557
Query 1515 TCGATCC-AGTTTaaccaaccaaaccaaaaccatattggaaaaaccactatgacaactga 1573
||||||| | |||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1558 TCGATCCGA-TTTAACCAACCAAACCAAAACCATTTTGGAAAACCCACTATGACAACTGA 1616
Query 1574 aatgaaaagacaaaaaaaaaagaaaaaaGTTTTAGTTTTCCTCTGACTCACGCTGGTCCC 1633
| |||||| |||||| ||| |||| |||||||| |||||||||||||||||
Sbjct 1617 ACTGAAAATACAAAACCAAA---------TTTTCGTTTTCCTGTGACTCACGCTGGTCCC 1667
Query 1634 ATGAATGTCAATCTCTTGGTTAATTG 1659
|||||||||||||||||||| ||||
Sbjct 1668 GTGAATGTCAATCTCTTGGTTCATTG 1693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81977489985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5