BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497320
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20460.1 | Symbols: | Major facilitator superfamily protein... 2220 0.0
> AT3G20460.1 | Symbols: | Major facilitator superfamily protein
| chr3:7135050-7139472 FORWARD LENGTH=1470
Length=1470
Score = 2220 bits (1202), Expect = 0.0
Identities = 1349/1419 (95%), Gaps = 13/1419 (1%)
Strand=Plus/Plus
Query 12 ACCACTTCTTCAGAAAGCCAGGATTCAAGAAGACATTGAATCAGATAAAGGCATTGGTGT 71
||||||||||||||||| || ||||||||||||||||||||| | |||||| ||| ||||
Sbjct 57 ACCACTTCTTCAGAAAGTCAAGATTCAAGAAGACATTGAATCCGTTAAAGGAATTCGTGT 116
Query 72 --A-AATGACAGCGACG-GTGACGGTCCCGTTACTTTAATTCTACTCTTCACAACCTTAA 127
| |||||| |||| | | |||||||||||||||||||||||||||||||||||||| |
Sbjct 117 AAATAATGACGGCGAAGAG-GACGGTCCCGTTACTTTAATTCTACTCTTCACAACCTTCA 175
Query 128 CTACTCTCTGCGGTACCTTCTCCTATGGCACTGCCGCCGGCTTTACATCACCAGCTCAAA 187
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 CTGCTCTCTGCGGCACCTTCTCCTATGGCACTGCCGCCGGCTTTACATCACCAGCTCAAA 235
Query 188 CCGGGATTATGGCAGGACTTAACCTCTCTTTGGCTGAGTTCTCATTCTTTGGAGCTGTCT 247
||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 236 CCGGGATTATGGCAGGACTGAACCTTTCTTTGGCTGAGTTCTCATTCTTTGGGGCTGTCT 295
Query 248 TAACAATTGGTGGACTTGTGGGAGCCGCGATGTCGGGAAAACTTGCTGATATCTTTGGTC 307
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 296 TAACAATTGGTGGACTTGTGGGAGCCGCGATGTCGGGAAAACTTGCTGATGTCTTTGGTC 355
Query 308 GAAGAGGCGCTTTGGGGGTTTCAAACTCGTTTTGCATGGCCGGCTGGCTTATGATCGCCT 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 356 GAAGAGGCGCTTTGGGGGTTTCAAACTCGTTTTGCATGGCCGGCTGGCTTATGATTGCCT 415
Query 368 TCTCTCAGGCGACTTGGTCCCTTGATATCGGAAGACTTTTTCTCGGGGTCGCAGCTGGCG 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TCTCTCAGGCGACTTGGTCCCTTGATATCGGAAGACTTTTTCTCGGGGTCGCAGCTGGCG 475
Query 428 TAGTC-TCTTATGTGGTACCAGTCTACATTGTTGAAATCGCGCCCAAAAAGGTCCGAGGC 486
||| | |||||||||||||||||||| |||||||||||||| |||||||| || || |||
Sbjct 476 TAG-CTTCTTATGTGGTACCAGTCTATATTGTTGAAATCGCTCCCAAAAAAGTTCGTGGC 534
Query 487 ACGTTCTCTGCGATTAACTCGCTCGTGATGTGTGGTAGCGTCGCCGTCACATACCTCCTT 546
|| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 535 ACATTCTCTGCGATTAACTCGCTTGTGATGTGTGCTAGCGTCGCCGTCACATACCTCCTT 594
Query 547 GGATCAATCATTTCATGGCAAAAATTAGCTCTCATAAGTACGGCTCCTTGTGTTTTTGAA 606
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 595 GGATCAGTCATTTCATGGCAAAAATTAGCTCTCATAAGTACGGTTCCTTGTGTTTTTGAA 654
Query 607 TTCGTCGGTTTATTCTTCATACCGGAGTCTCCTCGGTGGCTGTCTAGAAACGGTCGGGTG 666
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 655 TTCGTCGGTTTATTCTTCATACCGGAGTCTCCTAGGTGGCTGTCTAGAAACGGTAGGGTG 714
Query 667 AAAGAATCGGAAGTTGCACTCCAACGCCTACGAGGAAACAACACTGATATCACTAAAGAG 726
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AAAGAATCGGAAGTTTCACTCCAACGCCTACGAGGAAACAACACTGATATCACTAAAGAG 774
Query 727 GCTGCAGAAATCAAAAAATATATGGACAATCTTCAAGAATTCAAAGAAGATGGTTTTTTC 786
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 775 GCTGCAGAAATCAAAAAATATATGGATAATCTTCAAGAATTCAAAGAAGATGGTTTTTTC 834
Query 787 GATCTCTTCAATCCC-CGATACTCTCGTGTCATTACTGTGGGAATTGGATTGCTAGTACT 845
||||||||||| ||| ||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct 835 GATCTCTTCAA-CCCACGATATTCTCGTGTCGTTACTGTTGGAATTGGATTGCTAGTACT 893
Query 846 ACAACAACTCGGAGGTCTCAGTGGCTATACATTTTA-CTTGAGCTCCATTTTCAAAAAAT 904
||||||||| |||||||||||||||||||||||||| ||| ||||| || ||||||||||
Sbjct 894 ACAACAACTGGGAGGTCTCAGTGGCTATACATTTTACCTT-AGCTCGATATTCAAAAAAT 952
Query 905 CAGGGTTTCCTAACAACGTAGGAGTAATGGTTTCGAGCGTGGTGCAGTCCGTGACAAGCG 964
| ||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||
Sbjct 953 CGGGGTTTCCTAACAACGTAGGAGTAATGATGGCGAGCGTGGTGCAGTCTGTGACAAGCG 1012
Query 965 TTTTAGGAATAGTAATCATAGATAAATATGGAAGACGATCCCTTTTAACGGTTGCGACTG 1024
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct 1013 TTTTAGGAATAGTAATCGTGGATAAATATGGAAGACGATCCCTTTTAACGGTTGCGAC-G 1071
Query 1025 -TCATGATGTGTTTGGGGTCATTAATTACAGGACTATCGTTTTTGTTTCAGAGCTATGGT 1083
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 ATCATGATGTGTTTGGGCTCATTAATTACAGGACTATCGTTTTTGTTTCAGAGCTATGGT 1131
Query 1084 TTACTTGAACATTACACACCAATTTCAACATTCATGGGAGTGTTGATTTTTCTAACTTCG 1143
||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1132 TTACTTGAACATTACACCCCAATTTCAACATTTATGGGAGTGTTGGTTTTTCTAACTTCG 1191
Query 1144 ATTACAATCGGAATAGGAGGCATTCCATGGGTCATGATATCCGAGATGACACCGATCAAT 1203
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 1192 ATTACAATCGGAATAGGAGGTATTCCATGGGTTATGATATCTGAGATGACACCGATCAAT 1251
Query 1204 ATAAAAGGATCAGCAGGGACGCTATGCAATCTAACTAGCTGGTCCAGCAATTGGTTCGTC 1263
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1252 ATAAAAGGATCAGCAGGGACGCTATGCAATTTAACTAGCTGGTCCAGCAATTGGTTCGTC 1311
Query 1264 TCTTACACATTCAACTTCCTCTTCCAGTGGAGCTCTTCTGGTGTGTTTTTCATATATACA 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TCTTACACATTCAACTTCCTCTTCCAGTGGAGCTCTTCTGGTGTGTTTTTCATATATACA 1371
Query 1324 ATTATATCGGGTGTGGGCATCCTATTTGTGATAAAGATGGTACCAGAGACTCGAGGTCGT 1383
|| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1372 ATGATATCGGGTGTGGGCATCCTGTTTGTGATGAAGATGGTACCCGAGACTCGAGGTCGT 1431
Query 1384 TCGCTCGAAGAGATTCAAGCTGCCATTACTCGATAACTT 1422
||||||||||| ||||||||||||||||| |||||||||
Sbjct 1432 TCGCTCGAAGAAATTCAAGCTGCCATTACCCGATAACTT 1470
Score = 87.9 bits (47), Expect = 2e-16
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGACGAACCACTTCTTCAGAAAGCCAGGATTCAAGAAGACATTGAATC 53
|||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1 ATGGGAGACGAACCACTTCTTCAGAAAGTCAAGATTCAAGAAGACATTGAATC 53
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5