BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497322
Length=788
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11650.1 | Symbols: NHL2 | NDR1/HIN1-like 2 | chr3:3676146-3... 1173 0.0
AT5G06320.1 | Symbols: NHL3 | NDR1/HIN1-like 3 | chr5:1930793-1... 274 9e-73
> AT3G11650.1 | Symbols: NHL2 | NDR1/HIN1-like 2 | chr3:3676146-3677037
REVERSE LENGTH=892
Length=892
Score = 1173 bits (635), Expect = 0.0
Identities = 740/790 (94%), Gaps = 9/790 (1%)
Strand=Plus/Plus
Query 1 AATTTCTCTCTGAGGCAAATCGTCGAAC-ACATGGGGACCAAACAACCATACCTAAACGG 59
|||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||
Sbjct 21 AATTTCTCTCTGAGGCAATTCGTCGAACAACATGGGGTCCAAACAACCATACCTAAACGG 80
Query 60 CGCATACTACGGACCATCAATTCCTCCGCCGGCTAAAGCTCACCGCAGCTACGACTCACC 119
||| |||||||||||||||||||| || ||| |||| |||||||||||||| |||||||
Sbjct 81 CGCGTACTACGGACCATCAATTCCACCACCGCCTAAGGCTCACCGCAGCTATAACTCACC 140
Query 120 TGGATTCGGATGCTGTTGCTTCAGCTGCCTCGGAAGCTGTCTACGCTGCTGCGGTTGCTG 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 141 TGGATTCGGATGCTGTTGCTTCAGCTGCCTCGGAAGCTGTCTACGTTGCTGCGGTTGCTG 200
Query 180 CATCTTAAGCCTGATCTGCAACATCCTCATAGCCATAGCCGTAATCCTCGCAATCACCGG 239
||||||||||||||||||||||||||||||||| ||||||||||||||| | || |||
Sbjct 201 CATCTTAAGCCTGATCTGCAACATCCTCATAGCTGTAGCCGTAATCCTCGGAGTCGCCGC 260
Query 240 TTTTATCCTCTGGCTCATATTCCGTCCAAACGCCGTCAAATTCTACGTCGCCGACGCTAA 299
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 261 TCTTATCCTCTGGCTCATCTTCCGTCCAAACGCCGTCAAATTCTACGTCGCCGACGCTAA 320
Query 300 TCTGAACCGATTCAGCTTCGATTCAAACAACAACAGCAATCTCCATTACAGTCTCGATCT 359
|||||||||||||||||||||| |||||||| | | | ||||||||||||||||||||
Sbjct 321 TCTGAACCGATTCAGCTTCGATCCAAACAAC-A-A-C---CTCCATTACAGTCTCGATCT 374
Query 360 CAATTTCACAATCCGTAACCCTAATCAACGAGTCGGAGTCTACTACGATGAGATCTCGGT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 375 CAATTTCACAATCCGTAACCCTAATCAACGAGTCGGAGTCTACTACGATGAGTTCTCGGT 434
Query 420 GAGTGGCTATTACGGTGATCAGAGATTCGGATCTGTGAACGTTTCGTCGTTTTATCAAGG 479
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 435 TAGTGGCTATTACGGAGATCAGAGATTCGGATCTGCGAACGTTTCGTCGTTTTATCAAGG 494
Query 480 GCACAAGAATACGACGGTGATTTTAAGAAAAATTGAAGGACAGAATCTGGTGGTGCTCGG 539
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 495 GCATAAGAATACGACGGTGATTTTAACCAAAATTGAAGGACAGAATCTGGTGGTGCTCGG 554
Query 540 CGACGGAGCGAGAACAGATCTGAAGGAAGATGAGAAATCTGGGGTTTATCGGATTGATGC 599
||||||||||||||||||||| || || ||||||||||||||| ||||||||||| ||||
Sbjct 555 CGACGGAGCGAGAACAGATCTAAAAGATGATGAGAAATCTGGGATTTATCGGATTAATGC 614
Query 600 GAAATTGCGGCTAAGTGTTAGGTTTAAGTTTTGGGTGATTAAGTCGTGGAAGCTTAAACC 659
||||||| |||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 615 GAAATTGAGGCTAAGTGTTAGGTTTAAGTTTTGGTTTATAAAGTCGTGGAAGCTTAAACC 674
Query 660 AAAGATTAAGTGTGATGATCTTAAGATTCCTCTTGGTTCCTCTAATTCAACCGGAGGGTT 719
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 675 AAAGATTAAGTGTGATGATCTTAAGATTCCTCTTGGTTCCTCTAATTCTACAGGAGGGTT 734
Query 720 TAAGTTTCAACCAGT-CAAGTGTGATTTTGACTTATCTTAGTCAACTCCAAGTTTTATGA 778
|||||||||||| || || |||||| |||||||||||||||| |||||||||||||||||
Sbjct 735 TAAGTTTCAACCGGTGCA-GTGTGACTTTGACTTATCTTAGTAAACTCCAAGTTTTATGA 793
Query 779 Attttttttt 788
||| ||||||
Sbjct 794 ATTCTTTTTT 803
> AT5G06320.1 | Symbols: NHL3 | NDR1/HIN1-like 3 | chr5:1930793-1931768
REVERSE LENGTH=976
Length=976
Score = 274 bits (148), Expect = 9e-73
Identities = 464/612 (76%), Gaps = 39/612 (6%)
Strand=Plus/Plus
Query 156 CTGTCTACGCTGCTGCGGTTGCTGCATCTTAAGCCTGATCTGCAACATCCTCATAGCCAT 215
|||||| |||||||||| ||||| ||||||||| | |||| ||||||||||||| ||||
Sbjct 162 CTGTCTTGGCTGCTGCGGCTGCTGTATCTTAAGCGTCATCTTCAACATCCTCATAACCAT 221
Query 216 AGCCGTAATCCT-CGCAATCA-CCGGTTTTATCCTCTGGCTCATATTCCGTCCAAACGCC 273
|||||| | | || || | | | | | ||| |||||||||| ||| | || |||||
Sbjct 222 AGCCGTCTTATTAGGC-AT-AGCTGCTCTAATCATCTGGCTCATTTTCAGACCCAACGCT 279
Query 274 GTCAAATTCTACGTCGCCGACGCTAATCTGAACCG-ATTCAGC-TTCGATTCAAACAACA 331
|||||||| ||||| |||||||||| || |||| ||||| | |||| ||| |||||
Sbjct 280 ATCAAATTCCACGTCACCGACGCTAAACT-CACCGAATTCA-CACTCGACCCAACCAACA 337
Query 332 ACAGCAATCTCCATTACAGTCTCGATCTCAATTTCACAATCCGTAACCCTAATCAACG-A 390
|| | || | | |||| ||||||||||||||||||||||||||||||||| | || |
Sbjct 338 AC--C--TC-CGA-TACAATCTCGATCTCAATTTCACAATCCGTAACCCTAACCGCCGGA 391
Query 391 GTCGGAGTCTACTACGATGAGATCTCGGTGAGTGGCTATTACGGTGATCAGAGATTCGG- 449
|||| || ||||| ||||| ||| || || || || |||||||||||| |||||||
Sbjct 392 -TCGGTGTTTACTATGATGAAATCGAAGTCAGAGGATACTACGGTGATCAGCGATTCGGT 450
Query 450 ATCTGTGA-A-CGTTTCGTCGTTTTATCAAGGG-CACAAGAATACGACGGTGATTTTAAG 506
|| || | | | | ||| |||||| || ||| || ||||| ||||||||| || ||
Sbjct 451 ATGAGTAACAACATCTCGAAGTTTTACCA-GGGACATAAGAACACGACGGTGGTTGGAAC 509
Query 507 AAAAATTGAAGGACAG-AATCTGGTGGTGCTCGGCGACGGAGCGAGAACAG-ATCTGAAG 564
||| | | |||||| ||| ||||| |||| | || ||||| ||| | || || ||||
Sbjct 510 TAAACTCGTGGGACAGCAAT-TGGTGCTGCTTGACGGCGGAGAGAGGA-AGGATTTGAAC 567
Query 565 GAAGATGAGAAATCTGGGGTTTATCGGATTGATGCGAAATTGCGGCT-AAGTGTTAGGTT 623
|| |||| ||| ||| | | ||| |||| ||||| || || | || ||| |||||||
Sbjct 568 GAGGATGTGAATTCTCAGATCTATAGGATCGATGCCAAGCTGAGACTTAAGA-TTAGGTT 626
Query 624 TAAGTTTTGGGT-GATTAAGTCGTGGAAGCTTAAA-CCAAAGATTAAGTGTGATGATCTT 681
||||||| |||| ||| |||||||||| | || || || ||||| ||||| ||| ||
Sbjct 627 TAAGTTT-GGGTTGATCAAGTCGTGGAGG-TTCAAGCCCAAGATCAAGTGCGATC-TC-- 681
Query 682 AAGATTCCTCTTGGTTCCTCTAATTCAACCGGAGGGTTTAAGTTTCAACCAGTC-AAGTG 740
||| |||||||| |||||||||||||| | |||||| ||||| || | | |||||
Sbjct 682 AAGGTTCCTCTTA---CCTCTAATTCAACCAGCGGGTTTGTTTTTCAGCC-GACCAAGTG 737
Query 741 TGATTTTGACTT 752
||| |||||||
Sbjct 738 TGACGTTGACTT 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38328654161
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5