BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497328
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28650.1 | Symbols: ATEXO70H8, EXO70H8 | exocyst subunit exo... 2318 0.0
> AT2G28650.1 | Symbols: ATEXO70H8, EXO70H8 | exocyst subunit exo70
family protein H8 | chr2:12289152-12291045 REVERSE LENGTH=1894
Length=1894
Score = 2318 bits (1255), Expect = 0.0
Identities = 1585/1742 (91%), Gaps = 32/1742 (2%)
Strand=Plus/Plus
Query 1 AAACACAAAAATGGTACTCTTCGCTTTATCAACGActtcttcttcttcttctAAGCTAAA 60
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 55 AAACACAAAAATGGTACTCTTCACTTTATCAACAACTTCTTCTTCTTCTTCTAAGCTAAA 114
Query 61 ACAACATTCACACCAAAGCTTTTTAGAGTCTCTAATGGAAGATAGTCTCGAAGACGCTGA 120
||||||||||||||||||||| | |||||||||||||||| | | | |||||||||||||
Sbjct 115 ACAACATTCACACCAAAGCTTCTCAGAGTCTCTAATGGAACACACTATCGAAGACGCTGA 174
Query 121 ATCTACCATAAACCAATGGATTTCACCGGAACTCGTCGA-TGCTTCTTCTTTCTGCTTCA 179
||| | ||| | | |||||||||||| |||| |||| | | ||||||| ||||||||||
Sbjct 175 ATCCATCATCCATCGATGGATTTCACCAGAACACGTCCACT-CTTCTTCCTTCTGCTTCA 233
Query 180 TCTCATCGCTATTTTCAACCGAAAACCGCGAAGAAGCCAAACGATTCATCAACACTGTAA 239
||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| |
Sbjct 234 TCTCATCGCTATTTTCAACCGAAAACCGCGAAGAAGCGAAACGATTCATCGACGCTGTTA 293
Query 240 ACAACTTACACTCCGGTATGATAAGACTAATCTCAGTAAATCCAACGTCAACGAAACTCG 299
|| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 294 CCACCTTACACTCCGGTATGATAAGACTAATCTCAGTGAATCCAACGTCAATGAAACTCG 353
Query 300 TTAAAGCCGAGAATCTAATGCGAATCTCCATGAATCATCTCTCCAAAGAGTTTTACCGCA 359
||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||||
Sbjct 354 TTAAAGCAGAGAATCTAATGCGTATCTCAATGACTCATCTCTCCAAAGAGTTTTACCGCA 413
Query 360 TTCTTAAATCAAATCGACGCTACCTCGACCCCGAATCCGTCTCTATCCGTTCTTCAAAAG 419
|||| ||||| || ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 414 TTCTCAAATCGAACCGACGTTATCTCGACCCCGAATCCGTCTCTATCCGTTCTTCAAAAG 473
Query 420 CTTCCGATTCCGACTCCGA-T--G--T-------CATGAAAGATTTAAAGATGATCGCGG 467
||||||||||||||||||| | | | |||| | ||| |||||||||||||||
Sbjct 474 CTTCCGATTCCGACTCCGATTCCGATTCCAACACCATGGATGATCTAAAGATGATCGCGG 533
Query 468 ATTGTATGATATCATCCGGATATAGCAAAGAATGCTTTAAAATATACAAGAA-AATCCGT 526
|||||||||||||||| || || |||||||||||||||||||| ||||| || |||||||
Sbjct 534 ATTGTATGATATCATCTGGCTACAGCAAAGAATGCTTTAAAATCTACAA-AAGAATCCGT 592
Query 527 AAATCGATAATCGTCGAAGCGATAAATCAACTTGGATTCGAGAATCTAACGTTTTCGCAG 586
|||||||| || ||||||| |||| ||||| |||||||||||| ||||||||||||||
Sbjct 593 AAATCGATCATTAACGAAGCGTTAAACCAACTCGGATTCGAGAATTTAACGTTTTCGCAG 652
Query 587 ATACAGAAACTTAAATGGGAAGTTATGGAGAAGAAGATACGAAAATGGTTACGAGTTACA 646
|| ||||||||| |||||||||||||||||||||||||||| ||||||||| || |||
Sbjct 653 ATTCAGAAACTTGAATGGGAAGTTATGGAGAAGAAGATACGTAAATGGTTAAGAACAACA 712
Query 647 ACAAGAACTGTGAATACTCTGTTTTCCGGCGAACGAATCCTCTCCGATCACGTCTTCTCT 706
|||||| | |||||||||||||||||||| |||| ||||||||||||||| |||||||||
Sbjct 713 ACAAGAGCAGTGAATACTCTGTTTTCCGGTGAACAAATCCTCTCCGATCATGTCTTCTCT 772
Query 707 TCATCATCATCATCAATTCGTGAATCTGCATTTGCAGAAATCACATTACAAAGCGCTTTA 766
|||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 773 TCATCATCATCAACAATTCGTGAATCTGCATTTGCAGAAATCACATCACAAACCGCTTTA 832
Query 767 GCTTTGTTTACTTTCCCGGAAAAAATGGCGAAATGTCGAAAATCTCCGGAGAAGATCTTT 826
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GCTTTGTTCACTTTCCCGGAAAAAATGGCGAAATGTCGAAAATCTCCGGAGAAGATCTTC 892
Query 827 CTGACTCTCGATGTTTATCAAACAATCATCGATCTATTGCCTAAGATCGACGAACTCTTC 886
|| |||||||||||||||||||| ||| | |||||||| ||||||||| ||||||||||
Sbjct 893 CTCACTCTCGATGTTTATCAAACGATCGTTGATCTATTACCTAAGATCAACGAACTCTTT 952
Query 887 AGCTCCGATTCAACCTCCACCGTCAGATCACAAATCGCTTTAAGTTTAGCAAATCTCAGA 946
||||| ||||||||||||||||| ||||||||| ||| ||||| |||| |||||||||
Sbjct 953 AGCTCTGATTCAACCTCCACCGTTAGATCACAAGTCGATTTAACATTAGTGAATCTCAGA 1012
Query 947 GAAGGTGTGATTTCGATGATCGATGAATTCGAATCTTCGATTTCGAAAGAATCGTCGAAA 1006
||||||||| ||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 1013 GAAGGTGTGGTTTCGATGATCGACGAGTTCGAATCTTCGATTTCGAAAGAATCATCGAAA 1072
Query 1007 TCGTTAATCTCCGGAGGTGGAATTCATCAATTGACGAGGTATGTGATGAATTTCATCGCC 1066
|||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| |
Sbjct 1073 TCGTTAATCTCCGGTGGTGGAATTCATCAATTGACAAGGTATGTAATGAATTTCATCGTC 1132
Query 1067 TTCCTCGCTGATTACAGTGATACACTCTCCGATATCATCTCGAAACCGTTGTTACCTTCA 1126
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1133 TTCCTCGCTGATTACAGTGATACACTCTCCGATATCATCTCGAAACCGTCGTTACCTTCA 1192
Query 1127 CCGGAAGAAG--AAAG-CTCCGGTGATTCATCTCCGGTGAAATCGCGAATCGCGTGGCTG 1183
|||||||||| |||| |||||| ||||| || ||||||||||| |||||| || || ||
Sbjct 1193 CCGGAAGAAGAAAAAGACTCCGGAGATTCGTCACCGGTGAAATCACGAATCTCGAGGTTG 1252
Query 1184 ATTTTGTTCTTACTCTGCAAAATCGACGCGAAGTCTCGTCTCTATAACGACGTAGCTCTC 1243
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1253 ATTTTGTTCTTACTCTGTAAAATCGACGCCAAGTCTCGTCTCTATAACGACGTAGCTCTC 1312
Query 1244 TCGTATCTGTTTTTGATTAATAATGTTAATTACGTTGTTGTTAAAGTCCGATCGTCGAAT 1303
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1313 TCGTATCTGTTTTTGATTAATAACGTTAATTACGTTGTTGTTAAAGTCCGATCTTCGAAT 1372
Query 1304 CTGAGGATGGTTTTGAGTGAGGATTGGGTTAAGAAGCATGAAGGGAAGGTGAAGAAGTAC 1363
||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1373 TTGAAGACGGTTTTGAGTGAGGATTGGGTTAAGAAGCATGAAGCGAAGGTGAAGAAGTAT 1432
Query 1364 GCCG-GAAAGTTTGAGGAGATTGTTTGGGGAGAGGTGATGACGTCACTTTCTGATGATGT 1422
| | ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1433 GTGGCGAA-GTTTGAGGAGATTGTTTGGGGAGAGATGATGACGTCACTTTCTGATGATGT 1491
Query 1423 GACGACG---GCGGAGGAGAGG-ATTA-GACGGTTTAGTGATGGGTTTGAGGAAGCGTAT 1477
||||| | |||||||| ||| |||| | ||||||||||||||||||||||||||||||
Sbjct 1492 GACGATGACTGCGGAGGA-AGGGATTAAG-CGGTTTAGTGATGGGTTTGAGGAAGCGTAT 1549
Query 1478 AAGAGGCAAACCGGTTGGGTTGTACCGGATTCGAAATTGAGAGATGAGATTAAACGGTCT 1537
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 AAGAGACAAACCGGTTGGATTGTACCGGATTCGAAATTGAGAGATGAGATTAAACGGTCT 1609
Query 1538 GTGGGGATGATGATTATACCGAGATATTC-GGGTTTTTGTGAAAGGTATCGGGTCGGGTT 1596
|| |||||||||||||||||||||||||| ||||||| |||||||| | |||||| ||||
Sbjct 1610 GTTGGGATGATGATTATACCGAGATATTCCGGGTTTT-GTGAAAGGAACCGGGTCAGGTT 1668
Query 1597 ATTAGAGAATGTCGGATTTGCCCCTGAGGATATTGGGAATTATCTTTCGGATTTGTATTT 1656
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1669 ATTGGAGAATGTCGGATTTGACCCTGAGGATATTGGGAATTATCTTTCGGATTTGTATTT 1728
Query 1657 TGGGTCTCGTGGATCAGGGAGTGTTTCGTCT-TTCCATTCTTCTGGTTCCTCTGTTTGAC 1715
||||||| ||||||||||||||| |||||| ||| ||||||| ||||| ||||||| ||
Sbjct 1729 TGGGTCTGGTGGATCAGGGAGTGGTTCGTCAGTTC-ATTCTTCGGGTTCTTCTGTTTAAC 1787
Query 1716 AC 1717
||
Sbjct 1788 AC 1789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84889121595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5