BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497329
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15400.1 | Symbols: ATA20 | anther 20 | chr3:5201644-5203197... 953 0.0
> AT3G15400.1 | Symbols: ATA20 | anther 20 | chr3:5201644-5203197
FORWARD LENGTH=1554
Length=1554
Score = 953 bits (516), Expect = 0.0
Identities = 688/768 (90%), Gaps = 23/768 (3%)
Strand=Plus/Plus
Query 4 CCAGATCATGAGGTACATCCTGAGCACATGGTCAAGCCTGACCATAAACTGCAGTCCATG 63
|||||||||||||| || |||||||||| ||||||||||| ||||| ||| |||||||||
Sbjct 194 CCAGATCATGAGGTCCAACCTGAGCACACGGTCAAGCCTGGCCATACACTCCAGTCCATG 253
Query 64 TTGGGTGCATTAGAACATCCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATG 123
| |||| || ||||||||| ||||||||||| |||||| ||||| ||||||||| |||
Sbjct 254 TCCGGTGTATCAGAACATCCAGAGCACACGGTTAAGCCTGGCCATACACTCCAGTCCATG 313
Query 124 TTGGGTGAATCAGAACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATG 183
| |||| || |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 314 TCCGGTGCATTAGAACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATG 373
Query 184 TTGGGAGAACATCTTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCGGGT 243
||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 374 TTGGGAGAACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGT-TGG- 431
Query 244 GTATCAGAACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCTTTGTTAGGT 303
| |||||||||||||||||||| |||||||||||||||||||||||| |||| ||
Sbjct 432 G----AGAACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG- 485
Query 304 GAATCAGAACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTGCAGTCCATGTCTGGT 363
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 486 G----AGAACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCTGGT 541
Query 364 GAATCAAAACATCCTGCGCACAAAATCAAGCCTGATCAGATAATGCAGACCATGGCGAGT 423
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 542 GAATCAAAACATCCTGAGCACAAAGTCAAGCCTGATCAGATAATGCAGACCATGGCGAGT 601
Query 424 GAACTGGAAGAGGAAGATCCAGACCACACAACTAAGCCTATGGGATATGGTGTAGGTAGG 483
|||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||
Sbjct 602 GAACTGGAAGAGGAAGATCCTGACCACACAAGTAAGCCTATGGGGTATGGTGTAGGTAGG 661
Query 484 GGCTACGGAAGTGGTGGGTCTGGTGTTGGCTATGGCGTTG-AATTGGCTCTAGTGGAGGG 542
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 662 GGCTATGGAAGTGGTGGGTCTGGTGTTGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGC 721
Query 543 AGTGGCTTTGGGGAAGGAACTGGCTCTAGTGGAGGCATTGGCTTTGGAGAAGGTATTGGC 602
||||||||||| ||||| | ||||||||||||||||| |||||||||||||| ||||||
Sbjct 722 AGTGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAACGGCTTTGGAGAAGGAATTGGC 781
Query 603 TCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAGTGGCTTTGGA 662
|||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 782 TCTAGTGGAGGCAGCGGCTTTGGAGAAGGAATTGGCTCTAGTGGAGGCAGCGGCTTTGGT 841
Query 663 GAAGGAATTGGGTCTAGTGGTGGCAGC-GGCTTTGGTGAAGGAATTGGA-A-GGAATAGG 719
||||||||||| ||| ||||||| | | || | | || | | ||||| | ||||||||
Sbjct 842 GAAGGAATTGGTTCTGGTGGTGGTA-CAGG-TAT--TG--GCA-TTGGAGAAGGAATAGG 894
Query 720 ATCCGGGTCTGGCCAACCCAATTGCGGTCCAGTCACGGGAGCTCCAGG 767
||||||||||| ||||||||||||||| || |||||||||||||||||
Sbjct 895 ATCCGGGTCTGCCCAACCCAATTGCGGCCCTGTCACGGGAGCTCCAGG 942
Score = 562 bits (304), Expect = 3e-159
Identities = 502/588 (85%), Gaps = 52/588 (9%)
Strand=Plus/Plus
Query 762 TCCAGGCGAAGGGATTGGTATCGGAATAGGACAGGGCTCTAGTGGTGGACCCGGTGTAGT 821
|||||| ||||||||||||||||| ||||| | | || |||||||| |||||||
Sbjct 979 TCCAGGGGAAGGGATTGGTATCGGTATAGG--A-----C-AG-GGTGGACCTAGTGTAGT 1029
Query 822 TGTCCCAGGCGCAACAATCCCTCCCATAGTAGTTCCAGGCGCACAGATTCCCGGTTTTAC 881
||||||||| ||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1030 AGTCCCAGGCACAAGAATCCCTCCGATAGTGGTTCCAGGCGCACAGATTCCCGGTTTTGT 1089
Query 882 GATTCCAGGTATCACAGTTCCTGGCTACGGTTCTGGGTGCCAAACAGGTGGTTGCAATCC 941
||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 1090 GATTCCAGGTATCACAGTTCCTGGCTACGGTACTGGATGCCAAACAGGTGGCTGCAATCC 1149
Query 942 GTACCCACCACACTACTATAACCCACCAAGCTGTCCACATTGTCCACCTTTCACATCAGG 1001
| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1150 GAACCCACCACACTACTATATCCCACCAAGCTGTCCCCATTGTCCACCTTTCACATCAGG 1209
Query 1002 AGAAGACAAGCACATGTCAGACAAAGGAGCAATGACGGAAGCTCTTGCACCCACTACACC 1061
| ||||||| |||||||||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct 1210 ACAAGACAAACACATGTCAGACAAAGGAGCCATGACCGAAGCTCTTGCACCCACTTCACC 1269
Query 1062 GGAGATGCATGTTTAAG---T----GTCCATGAAACACGAGTCTAATAAATCTCACTCAT 1114
|||||| |||||||||| | ||||||||||||| ||||||||||| ||||||||
Sbjct 1270 GGAGATACATGTTTAAGCTTTAAGAGTCCATGAAACACCAGTCTAATAAA--TCACTCAT 1327
Query 1115 AATGAAATCTATTTTGGTTTGGTAAAAGCTTCACATAAAGTTGAATAAGACAACTTTCTT 1174
|||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||
Sbjct 1328 AATGAAATCTATTTTGGTTT-ATAAAAGCTTCACAGAAAGTTGAATAATACAACTTTCTT 1386
Query 1175 GC-C------CAAG-----T-A--GAAA-G--T-T-A-AATAAGGGA-AAGT--T-ATTT 1209
|| | ||| | | |||| | | | | |||||| || |||| | |
Sbjct 1387 GCTCAAGTAAAAAGATATATAAGGGAAATGCATATAAGAATAAGTGAGAAGTACTCAGAG 1446
Query 1210 A-AGAATAAG--TGATTGAGAATTAGGCAGCTGGTAATTGCATTTCCATGGC--TGTATC 1264
| |||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1447 ACAGAAAAAGATTGATTAAGAATTAGGCAGCTGGTAATTGCATTTCCATGGCTGTGTATC 1506
Query 1265 TGTATGACTGACAAATGAGTTTTAAA-A-ACCGGTCCACAAATCAAGT 1310
|||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 1507 TGTATGACTGACAAATGAGTTT-AAATAGACCGGTCCACAAATCAAGT 1553
Score = 379 bits (205), Expect = 3e-104
Identities = 299/342 (87%), Gaps = 16/342 (5%)
Strand=Plus/Plus
Query 18 ACATCCTGAGCACATGGTCAAGCCTGACCATAAACTGCAGTCCATGTTGGGTGCATTAGA 77
|||||| ||||||| ||| ||||||| ||||| ||| |||||||||| |||||||||||
Sbjct 268 ACATCCAGAGCACACGGTTAAGCCTGGCCATACACTCCAGTCCATGTCCGGTGCATTAGA 327
Query 78 ACATCCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATGTTGGGTGAATCAGA 137
|||||||||||||| || |||||| |||||||||||||||||||||| || | |||
Sbjct 328 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 381
Query 138 ACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATGTTGGGAGAACATCT 197
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 382 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTTGGGAGAACATCC 441
Query 198 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCGGGTGTATCAGAACATCC 257
|||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||
Sbjct 442 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTTGGG---A---GAACATCC 495
Query 258 TGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCTTTGT-TAGGTGAATCAGAACATC 316
||||||||||| ||||||||||||||||||||||| ||| | ||||||||| ||||||
Sbjct 496 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCT-GGTGAATCAAAACATC 554
Query 317 CTGAGCACAAGGTCAAGCCTGACCATA-AACTGCAGTCCATG 357
|||||||||| ||||||||||| || | || ||||| |||||
Sbjct 555 CTGAGCACAAAGTCAAGCCTGATCAGATAA-TGCAGACCATG 595
Score = 311 bits (168), Expect = 1e-83
Identities = 232/261 (89%), Gaps = 12/261 (5%)
Strand=Plus/Plus
Query 18 ACATCCTGAGCACATGGTCAAGCCTGACCATAAACTGCAGTCCATGTTGGGTGCATTAGA 77
|||||||||||||| || ||||||||||||||||| ||||| ||||| || | |||
Sbjct 328 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 381
Query 78 ACATCCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATGTTGGGTGAATCAGA 137
|||||||||||||| || |||||| |||||||||||||||||||||| || | |||
Sbjct 382 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 435
Query 138 ACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATGTTGGGAGAACATCT 197
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 436 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTTGGGAGAACATCC 495
Query 198 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCGGGTGTATCAGAACATCC 257
|||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||
Sbjct 496 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCTGGTGAATCAAAACATCC 555
Query 258 TGAGCACAAGGTCAAGCCTGA 278
||||||||| |||||||||||
Sbjct 556 TGAGCACAAAGTCAAGCCTGA 576
Score = 283 bits (153), Expect = 3e-75
Identities = 286/345 (83%), Gaps = 30/345 (9%)
Strand=Plus/Plus
Query 82 CCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATGTTGGGTGAATCAGAACAT 141
||||||||||||||||||||| ||||| ||||||||| |||| |||| ||||||||||
Sbjct 212 CCTGAGCACACGGTCAAGCCTGGCCATACACTCCAGTCCATGTCCGGTGTATCAGAACAT 271
Query 142 CCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATGT-TGG-G----AGAACAT 195
|| ||||||| ||| ||||||| ||||| |||||||||||||| || | |||||||
Sbjct 272 CCAGAGCACACGGTTAAGCCTGGCCATACACTCCAGTCCATGTCCGGTGCATTAGAACAT 331
Query 196 CTTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCGGGTGTATCAGAACAT 255
| |||||||||||||||||||||||||||||||||||| |||| ||| | ||||||
Sbjct 332 CCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTTGGG---A---GAACAT 385
Query 256 CCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCTTTGTTAGGTGAATCAGAACAT 315
||||||||||||| |||||||||||||||||||||||| |||| || || ||||||
Sbjct 386 CCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-GA----GAACAT 439
Query 316 CCTGAGCACAAGGTCAAGCCTGACCATAAACTGCAGTCCATGTCTGGTGAATCAAAACAT 375
||||||||||||| ||||||||||||||||| ||||| |||| ||| || || |||
Sbjct 440 CCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGT-TGG-GAG--AA--CAT 493
Query 376 CCTGCGCACAA--AATCAAGCCTGATCAGATAA-TGCAGACCATG 417
|||| |||||| || |||||||| || | || | ||| |||||
Sbjct 494 CCTGAGCACAAGGAA--AAGCCTGACCATA-AACTCCAGTCCATG 535
Score = 239 bits (129), Expect = 6e-62
Identities = 153/165 (93%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 545 TGGCTTTGGGGAAGGAACTGGCTCTAGTGGAGGCATTGGCTTTGGAGAAGGTATTGGCTC 604
||||| ||| | |||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 688 TGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCTC 747
Query 605 TAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGA 664
||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 748 TAGTGGAGGCAACGGCTTTGGAGAAGGAATTGGCTCTAGTGGAGGCAGCGGCTTTGGAGA 807
Query 665 AGGAATTGGGTCTAGTGGTGGCAGCGGCTTTGGTGAAGGAATTGG 709
||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 808 AGGAATTGGCTCTAGTGGAGGCAGCGGCTTTGGTGAAGGAATTGG 852
Score = 185 bits (100), Expect = 8e-46
Identities = 120/130 (92%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 580 TTGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCT 639
|||||| ||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 TTGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCT 746
Query 640 CTAGTGGAGGCAGTGGCTTTGGAGAAGGAATTGGGTCTAGTGGTGGCAGCGGCTTTGGTG 699
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 747 CTAGTGGAGGCAACGGCTTTGGAGAAGGAATTGGCTCTAGTGGAGGCAGCGGCTTTGGAG 806
Query 700 AAGGAATTGG 709
||||||||||
Sbjct 807 AAGGAATTGG 816
Score = 182 bits (98), Expect = 1e-44
Identities = 192/234 (82%), Gaps = 20/234 (9%)
Strand=Plus/Plus
Query 18 ACATCCTGAGCACATGGTCAAGCCTGACCATAAACTGCAGTCCATGTTGGGTGCATTAGA 77
|||||||||||||| || ||||||||||||||||| ||||| ||||| || | |||
Sbjct 382 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 435
Query 78 ACATCCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATGTTGGGTGAATCAGA 137
|||||||||||||| || |||||| |||||||||||||||||||||| || | |||
Sbjct 436 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 489
Query 138 ACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATGT-TGG-GAG--AA- 192
||||||||||||||||| |||||||||||||||||||||||||||| ||| || ||
Sbjct 490 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCTGGTGAATCAAA 549
Query 193 -CATCTTGAGCACAAGGAAAAGCCTGACCATA-AACTCCAGTCCATGTCGGGTG 244
|||| ||||||||| | |||||||| || | || | ||| ||||| || |||
Sbjct 550 ACATCCTGAGCACAAAGTCAAGCCTGATCAGATAA-TGCAGACCATGGCGAGTG 602
Score = 117 bits (63), Expect = 3e-25
Identities = 83/93 (89%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 617 TGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGAATTGGGTC 676
||||| ||| | || ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 688 TGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCTC 747
Query 677 TAGTGGTGGCAGCGGCTTTGGTGAAGGAATTGG 709
|||||| |||| ||||||||| |||||||||||
Sbjct 748 TAGTGGAGGCAACGGCTTTGGAGAAGGAATTGG 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64457499780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5