BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497332
Length=574
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15395.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 459 2e-128
> AT3G15395.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:5200713-5201418
FORWARD LENGTH=380
Length=380
Score = 459 bits (248), Expect = 2e-128
Identities = 307/334 (92%), Gaps = 9/334 (3%)
Strand=Plus/Plus
Query 153 AAA-CTAGCTTTGAAAGATTTATTGCAGAGAAAAAGTATGGGATCGAGAGGAATTATCAA 211
||| |||||||||||||| |||||||||||||||| |||||||||||||| ||||||||
Sbjct 53 AAAGCTAGCTTTGAAAGAGTTATTGCAGAGAAAAAAAATGGGATCGAGAGGGATTATCAA 112
Query 212 CGATAAGTGGTCAATGAGGATTTTATGGGGTTGTGCTATCGGAAGTGCAATTGGTTTATA 271
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 113 CGATAAGTGGTCAATGAGGATTCTATGGGGTTGTGCTATCGGAAGTGCTATTGGTTTATA 172
Query 272 CATGGTTGCTGTAGAAAGACAAACTCAGAACAGGGCTCGTGCTATGGCTGAGAGTTTGAG 331
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 CATGGTTGCTGTAGAGAGACAAACTCAGAACAGGGCTCGTGCTATGGCTGAGAGTTTGAG 232
Query 332 AGCTGCTGAGTCACAAGGTGATGGTGATAGTGTCTAAATCTATATCTACCTAGTAGTGCT 391
||||||||| ||||||||||||||||||| ||||||| | || ||||| |||||||||
Sbjct 233 AGCTGCTGAATCACAAGGTGATGGTGATAATGTCTAA-T--AT--CTACCAAGTAGTGCT 287
Query 392 CAGAAGAAGAATCTCAGTTGAGtttttttttttttgtgtttgtttttgtTATAATGACTT 451
||| ||| | |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 288 CAGTTGAATACTCTCAGTTGAGTTTTTTTTTTTG-GTGTTTGTTTTTGTTATAATGACTT 346
Query 452 CTTCTTCCAAGAGATTTTGTTGATGTAGTTTCTT 485
||||| |||||| | |||||||||||||||||
Sbjct 347 CTTCTGCCAAGA--TGGTGTTGATGTAGTTTCTT 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27578546703
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5