BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497339
Length=767
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65050.3 | Symbols: AGL31, MAF2 | AGAMOUS-like 31 | chr5:259... 1059 0.0
AT5G65060.1 | Symbols: MAF3, FCL3, AGL70 | K-box region and MAD... 1027 0.0
AT1G77080.4 | Symbols: MAF1, FLM, AGL27 | K-box region and MADS... 791 0.0
> AT5G65050.3 | Symbols: AGL31, MAF2 | AGAMOUS-like 31 | chr5:25982254-25986326
FORWARD LENGTH=964
Length=964
Score = 1059 bits (573), Expect = 0.0
Identities = 708/772 (92%), Gaps = 14/772 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaaaaaa-gagagagagagagagaaagagagagagagaaacgaagaaaaag 59
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 26 AAAAAAAAAAAAAAAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACGAAGAAAAAA 85
Query 60 aaagaagc-aaaaaCATTGTGGGTCTCTGGTGATTAGAATCAAATTAGGGCATAAGCCTT 118
|||||||| |||||||||||||||||| ||||||||| |||||||||||||| ||||||
Sbjct 86 AAAGAAGCAAAAAACATTGTGGGTCTCCGGTGATTAGGATCAAATTAGGGCACCAGCCTT 145
Query 119 ATCGGAGAAAGAAGCCATGGGAAGAAGAAAGGTCGAGATCAAGCGAATCGAGAGCAAAAG 178
||||||| ||||||||||||| |||| ||| |||||||||||||||||||||| ||||||
Sbjct 146 ATCGGAGGAAGAAGCCATGGGTAGAAAAAAAGTCGAGATCAAGCGAATCGAGAACAAAAG 205
Query 179 CAGTCGACAAGTTACTTTCTCCAAACGACGCAAAGGTCTCATCGAGAAAGCTCGACAACT 238
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 206 TAGTCGACAAGTCACTTTCTCCAAACGACGCAATGGTCTCATCGAGAAAGCTCGACAACT 265
Query 239 TTCAATTCTCTCTGAATCTTCCATCGCTGTTCTCGCCGTCTCTGGCTCTGGAAAACTCTA 298
||||||||||| ||||||||||||||||||||||| |||||| ||||| |||||||||||
Sbjct 266 TTCAATTCTCTGTGAATCTTCCATCGCTGTTCTCGTCGTCTCCGGCTCCGGAAAACTCTA 325
Query 299 CAACG-CTGCCTCCGGTGACAACATGTCAAAGATCATTGATCGTTATGAAATACATCATG 357
||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 326 CAA-GTCTGCCTCCGGTGACAACATGTCAAAGATCATTGATCGTTACGAAATACATCATG 384
Query 358 CTGATGAACT-GAAAGCCTTAGATCTTGCAGAAAAAATTCGGAATTATCTTCCACACAAG 416
|||||||||| ||| |||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 385 CTGATGAACTTGAA-GCCTTAGATCTTGCAGAAAAAACTCGGAATTATCTGCCACTCAAA 443
Query 417 GAGATACTAGAAATAGTTCAAAGCAAGCTTGAAGAACCAAATGTCGATACTGTAAGTGTA 476
||| ||||||||||||| |||||||||||||||||| |||||||||||| || ||||||
Sbjct 444 GAGTTACTAGAAATAGTCCAAAGCAAGCTTGAAGAATCAAATGTCGATAATGCAAGTGTG 503
Query 477 GATTCTCTAATTTCTATGGAGGAACAGCTCGAGACTACTCTGTCCGTAATTAGAGCTAAG 536
||| || |||||||| |||||||||||||||||||| |||||||||||| |||||||| |
Sbjct 504 GATACTTTAATTTCTCTGGAGGAACAGCTCGAGACTGCTCTGTCCGTAACTAGAGCTAGG 563
Query 537 AAGACAGAACTAATGATGGAGGAAGTGAAGTCCCTTCAAGAAACGGAGATGTTGCTGAGA 596
||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||
Sbjct 564 AAGACAGAACTAATGATGGGGGAAGTGAAGTCCCTTCAAAAAACGGAGAACTTGCTGAGA 623
Query 597 GAAGAGAACCAGA-TTCTGGCTAGCCATACCCAGTTGGGGAAGAATACGTTTCTGGTAAC 655
||||||||||||| || |||||||||| || ||||||||| ||||||||||| |
Sbjct 624 GAAGAGAACCAGACTT-TGGCTAGCCAG-----GT-GGGGAAGAAGACGTTTCTGGTTAT 676
Query 656 AGAAGGTGAGAGAAGAATGTCACGGGAAAATGGCTCCGGCAACAAAGTACCTGAGACTCT 715
||||||||| ||| |||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 677 AGAAGGTGACAGAGGAATGTCATGGGAAAATGGCTCCGGCAACAAAGTACGGGAGACTCT 736
Query 716 TCCGCTGCTCAAGTAATCACCATCATCAACGGCTCAGTTTTCACCTTAAACT 767
|||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 737 TCCGCTGCTCAAGTAATCACCATCATCAACGGCTGAGCTTTCACCTTAAACT 788
> AT5G65060.1 | Symbols: MAF3, FCL3, AGL70 | K-box region and MADS-box
transcription factor family protein | chr5:25987429-25991315
FORWARD LENGTH=939
Length=939
Score = 1027 bits (556), Expect = 0.0
Identities = 680/738 (92%), Gaps = 15/738 (2%)
Strand=Plus/Plus
Query 32 aaag-agagagagagaaacgaagaaaaagaaagaagcaaaaaCATTGTGGGTCTCTGGTG 90
|||| ||| ||| |||||||||| || ||| ||||||| ||||| |||||| | ||||
Sbjct 1 AAAGAAGA-AGATAGAAACGAAG---AA-AAA-AAGCAAACACATTTTGGGTCCCCGGTG 54
Query 91 ATTAGAATCAAATTAGGGCATAAGCCTTATCGGAGAAAGAAGCCATGGGAAGAAGAAAGG 150
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 55 GTTAGGATCAAATTAGGGCACAAACCTTATCGGAGAAAGAAGCCATGGGAAGAAGAAAAG 114
Query 151 TCGAGATCAAGCGAATCGAGAGCAAAAGCAGTCGACAAGTTACTTTCTCCAAACGACGCA 210
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 115 TCGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCA 174
Query 211 AAGGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTCTGAATCTTCCATCGCTGTTC 270
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 175 AAGGTCTCATCGAAAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTGTTG 234
Query 271 TCGCCGTCTCTGGCTCTGGAAAACTCTACAACGCTGCCTCCGGTGACAACATGTCAAAGA 330
|||||||||| || || |||||||||||| || |||||||||||||||||||||||||||
Sbjct 235 TCGCCGTCTCCGGTTCCGGAAAACTCTACGACTCTGCCTCCGGTGACAACATGTCAAAGA 294
Query 331 TCATTGATCGTTATGAAATACATCATGCTGATGAACTGAAAGCCTTAGATCTTGCAGAAA 390
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 295 TCATTGATCGTTATGAAATACATCATGCTGATGAACTTAAAGCCTTAGATCTTGCAGAAA 354
Query 391 AAATTCGGAATTATCTTCCACACAAGGAGATACTAGAAATAGTTCAAAGCAAGCTTGAAG 450
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 355 AAATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTGAAG 414
Query 451 AACCAAATGTCGATACTGTAAGTGTAGATTCTCTAATTTCTATGGAGGAACAGCTCGAGA 510
|| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 415 AATCAAATGTCGATAATGTAAGTGTAGATTCTCTAATATCTATGGAGGAACAGCTCGAGA 474
Query 511 CTACTCTGTCCGTAATTAGAGCTAAGAAGACAGAACTAATGATGGAGGA-AGTGAAGTCC 569
|| ||||||| |||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 475 CTGCTCTGTCAGTAATTAGAGCTAAGAAGACAGAACTAATGATGGAGGATA-TGAAGTCA 533
Query 570 CTTCAAGAAACGGAGATGTTGCTGAGAGAAGAGAACCAGATTCTGGCTAGCCATACCCAG 629
|||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |
Sbjct 534 CTTCAAGAAAGGGAGAAGTTGCTGATAGAAGAGAACCAGATTCTGGCTAGCCAG-----G 588
Query 630 TTGGGGAAGAATACGTTTCTGGTAACAGAAGGTGAGAGAAGAATGTCACGGGAAAATGGC 689
| ||||||||| ||||||||||| | ||||||||| ||| ||||||||||||||||||||
Sbjct 589 T-GGGGAAGAAGACGTTTCTGGTTATAGAAGGTGACAGAGGAATGTCACGGGAAAATGGC 647
Query 690 TCCGGCAACAAAGTACCTGAGACTCTTCCGCTGCTCAAGTAATCACCATCATCAACGGCT 749
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 648 TCCGGCAACAAAGTACCGGAGACTCTTTCGCTGCTCAAGTAATCACCATCATCAACGGCT 707
Query 750 CAGTTTTCACCTTAAACT 767
|| ||||||| ||||||
Sbjct 708 GAGCTTTCACCATAAACT 725
> AT1G77080.4 | Symbols: MAF1, FLM, AGL27 | K-box region and MADS-box
transcription factor family protein | chr1:28955637-28960096
FORWARD LENGTH=884
Length=884
Score = 791 bits (428), Expect = 0.0
Identities = 593/672 (88%), Gaps = 13/672 (2%)
Strand=Plus/Plus
Query 100 AAATTAGGGCATAAGCCTTATCGGAGA-AAGAAGCCATGGGAAGAAGAAAGGTCGAGATC 158
|||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||
Sbjct 7 AAATTAGGGCATAACCCTTATCGGAGATTTGAAGCCATGGGAAGAAGAAAAATCGAGATC 66
Query 159 AAGCGAATCGAGAGCAAAAGCAGTCGACAAGTTACTTTCTCCAAACGACGCAAAGGTCTC 218
||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 67 AAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAATGGTCTC 126
Query 219 ATCGAGAAAGCTCGACAACTTTCAATTCTCTCTGAATCTTCCATCGCTGTTCTCGCCGTC 278
||||| ||||||||||||||||| ||||||| |||||| ||| |||||||| ||| |||
Sbjct 127 ATCGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGTCGTCGTA 186
Query 279 TCTGGCTCTGGAAAACTCTACAACGCTGCCTCCGGTGACAACATGTCAAAGATCATTGAT 338
|||| ||| ||||||||||| || || ||||||||||| |||| || ||||||||||||
Sbjct 187 TCTGCCTCCGGAAAACTCTATGACTCTTCCTCCGGTGACGACATTTCCAAGATCATTGAT 246
Query 339 CGTTATGAAATACATCATGCTGATGAACTGAAAGCCTTAGATCTTGCAGAAAAAATTCGG 398
|||||||||||||| |||||||||||||| | |||||||||||||| ||||||||||| |
Sbjct 247 CGTTATGAAATACAACATGCTGATGAACTTAGAGCCTTAGATCTTGAAGAAAAAATTCAG 306
Query 399 AATTATCTTCCACACAAGGAGATACTAGAAATAGTTCAAAGCAAGCTTGAAGAACCAAAT 458
||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||
Sbjct 307 AATTATCTTCCACACAAGGAGTTACTAGAAACAGTCCAAAGCAAGCTTGAAGAACCAAAT 366
Query 459 GTCGATACTGTAAGTGTAGATTCTCTAATTTCTATGGAGGAACAGCTCGAGACTACTCTG 518
||||||| ||||||||||||||||||||||||| |||||||||| || |||||| |||||
Sbjct 367 GTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTTGAGACTGCTCTG 426
Query 519 TCCGTAATTAGAGCTAAGAAGACAGAACTAATGATGGAGGA-AGT-GAAGTCCCTTCAAG 576
||||||| |||||||| |||| ||||||| ||||||||| | | | || ||||||| |||
Sbjct 427 TCCGTAAGTAGAGCTAGGAAGGCAGAACTGATGATGGAGTATA-TCGA-GTCCCTTAAAG 484
Query 577 AAACGGAGATGTTGCTGAGAGAAGAGAACCAGATTCTGGCTAGCCATACCCAGTTGGGGA 636
||| ||||| ||||||||||||||||||||| ||||||||||||| | | ||| |
Sbjct 485 AAAAGGAGAAATTGCTGAGAGAAGAGAACCAGGTTCTGGCTAGCCAGA-----T-GGGAA 538
Query 637 AGAATACGTTTCTGGTAACAGAAGGTGAGAGAAGAATGTCAC-GGGAAAATGGCTCCGGC 695
|||||||||| |||| |||||| | ||||||| |||||| | ||||| | ||||||||
Sbjct 539 AGAATACGTTGCTGGCAACAGATGATGAGAGAGGAATGTTTCCGGGAAG-TAGCTCCGGC 597
Query 696 AACAAAGTACCTGAGACTCTTCCGCTGCTCAAGTAATCACCATCATCAACGGCTCAGTTT 755
|||||| |||| |||||||| ||||||||||| || ||||||||||||||||| |||||
Sbjct 598 AACAAAATACCGGAGACTCTCCCGCTGCTCAATTAGCCACCATCATCAACGGCTGAGTTT 657
Query 756 TCACCTTAAACT 767
||||||||||||
Sbjct 658 TCACCTTAAACT 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37273737074
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5