BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497343
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70980.1 | Symbols: SYNC3 | Class II aminoacyl-tRNA and biot... 1290 0.0
AT5G56680.1 | Symbols: SYNC1, EMB2755, SYNC1 ARATH | Class II a... 931 0.0
> AT1G70980.1 | Symbols: SYNC3 | Class II aminoacyl-tRNA and biotin
synthetases superfamily protein | chr1:26762339-26764623
FORWARD LENGTH=1945
Length=1945
Score = 1290 bits (698), Expect = 0.0
Identities = 821/881 (93%), Gaps = 6/881 (1%)
Strand=Plus/Plus
Query 2 TGCAGAAAGCGCAATTCTCCGACCGGGTTTTGATTCGATCGATTTTGAGCGGCGGAGCTA 61
|||||||||||||||| || ||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 71 TGCAGAAAGCGCAATTTTCAGACAGGGTTCTGATTCGATCGATTTTGGGCGGCGGAGCTA 130
Query 62 AACTTGCCGGTCAAAAGGTTAGAATCGGCGGTTGGGTTAAAACCGGAAGACAACAAGGGA 121
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 131 AACTCGCCGGTCAAAAGGTTAGAATCGGTGGTTGGGTTAAAACCGGAAGACAGCAAGGGA 190
Query 122 AAGGGAAATTTGCTTTCCTTGAGGTTAACGATGGATCTTGTCCAGCGAATCTTCAGGTTA 181
|||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 191 AAGGGACTTTTGCTTTCCTTGAGGTTAACGATGGGTCTTGTCCAGCGAATCTCCAGGTTA 250
Query 182 TGGTTGATTCTTCTCTTTATGATCTCTCTAGGTTAGTTGCGACGGGAACTTGTGTTACTG 241
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 251 TGGTTGATTCATCTCTTTATGATCTCTCTAGGTTGGTTGCGACTGGAACTTGTGTTACTG 310
Query 242 TTGATGGAGTTTTGAAGGTTCCACCTGAAGGTAAAGGTTTGAAACAGAGTATCGAGCTTA 301
||||||||||||||||| |||| || ||||||||||||||||| |||||||| |||||||
Sbjct 311 TTGATGGAGTTTTGAAGATTCCTCCGGAAGGTAAAGGTTTGAAGCAGAGTATTGAGCTTA 370
Query 302 ACGTTGAGA-GTGTGATTGATGTGGGAACTGTTGATCCGACTAAGTATCCGCTTCCTAAG 360
|||||||| | ||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 371 GCGTTGAGACG-GTGATTGCGGTGGGAACTGTTGATCCGACTACGTATCCGCTTCCTAAG 429
Query 361 ACTAAGTTGACTCCTGAGTTTCTCAGAGATTTGCTTCATCTTCGTTCCAGGACTAACTTG 420
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 430 ACTAAGTTGACTCCTGAGTTTCTCAGAGATGTGCTTCATCTTCGTTCTAGGACTAACTTG 489
Query 421 ATCTCAGCAGTGGCAAGAATCCGTAATGCGCTTGCTTTTGCGACCCACAGtttttttCAA 480
||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 490 ATCTCAGCAGTTGCAAGAATCCGTAACGCGCTTGCTTTTGCGACGCATAGTTTTTTTCAA 549
Query 481 GAACATGGTTTCCTTTACATTCACACTCCTATCATCACAACAAGTGATTGTGAAGGAGCT 540
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 550 GAACATAGTTTCCTTTACATTCACACTCCTATCATCACAACAAGTGATTGTGAAGGTGCT 609
Query 541 GGTGAAATGTTCCAAGTAACAACCTTGATCAATCACACTGAGAGGGTTGAGCAGGATCTC 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 GGTGAAATGTTCCAAGTGACAACCTTGATCAATCACACTGAGAGGGTTGAGCAGGATCTC 669
Query 601 ATTGATAACCCTCCACCCACTGAGGCTGATGTTGAAGCGGAGAGACTTATTGTCAAGGAG 660
||||||||||||||||| ||||||||||| |||||||||| || |||||||||||||||
Sbjct 670 ATTGATAACCCTCCACCAACTGAGGCTGACGTTGAAGCGGCCAGGCTTATTGTCAAGGAG 729
Query 661 AGAGGTGAAGCTGT-GTCGCGACTGAAAGCTGCCAAGGCAAGCAAGGAAGAGATCACTGC 719
|||||||||||||| | ||| ||| |||| ||||||||| ||||||||||||||||||||
Sbjct 730 AGAGGTGAAGCTGTTG-CGCAACTTAAAGTTGCCAAGGCGAGCAAGGAAGAGATCACTGC 788
Query 720 TTCCGTTGCTCAACTTACTATAGCAAAGGCGTGTTTAGCTCATGTTGAAGAGAGGTCAAG 779
||||||||||||||| | | ||||||||||| |||||||||||||||||||||||| |||
Sbjct 789 TTCCGTTGCTCAACTAAGTGTAGCAAAGGCGAGTTTAGCTCATGTTGAAGAGAGGTTAAG 848
Query 780 GCTTAAGCCTGGATTACCTAAAAAAGATGGAAAAATTGATTATTCGGATGATTTCTTTGG 839
||||||||||||| ||||||| || ||||| |||||||||||||| |||||||||||||
Sbjct 849 GCTTAAGCCTGGACTACCTAAGAATGATGGTAAAATTGATTATTCCAATGATTTCTTTGG 908
Query 840 CCGTCAAGCTTTCTTGACGGTT-CTGGTCAGTTACAACGTG 879
|||||||||||||||||| ||| |||||||||||||| |||
Sbjct 909 CCGTCAAGCTTTCTTGACAGTTTCTGGTCAGTTACAA-GTG 948
Score = 673 bits (364), Expect = 0.0
Identities = 438/473 (93%), Gaps = 7/473 (1%)
Strand=Plus/Plus
Query 870 TTA-CAACGTGTATACATTTGG-CCCGACTTTCCGAGCAGAGAACTCTCACACTTCAAGG 927
||| || ||||||||||||||| ||| ||||| || ||||||||||||||||||||||||
Sbjct 968 TTAGCAGCGTGTATACATTTGGTCCC-ACTTTTCGGGCAGAGAACTCTCACACTTCAAGG 1026
Query 928 CATTTAGCTGAATTCTGGATGGTTGAGCCTGAAATAGCTTTTGCAGATATACATGACGAC 987
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1027 CATTTAGCTGAGTTCTGGATGGTTGAGCCTGAAATTGCTTTTGCAGATATACATGACGAC 1086
Query 988 ATGAACTGTGCAGAGGCGTATGTGAAATACATGTGCAACTGGTTGATCAAGAATTGTTCC 1047
|||||||||||||||||||||||||||||||||||||| |||||||| | || ||| |
Sbjct 1087 ATGAACTGTGCAGAGGCGTATGTGAAATACATGTGCAAATGGTTGATGGATAAATGTGGC 1146
Query 1048 GATGACATGGATTTTATGGATAAGAATGTTGATGGGGGATGCACGAAAAGGCTAAAAATG 1107
||||||||||| ||||||||||||| || || | ||||||||| ||||||||||| |||
Sbjct 1147 GATGACATGGAACTTATGGATAAGAACGTCGACGAGGGATGCACTAAAAGGCTAAACATG 1206
Query 1108 GTTGCCGAAA-CCTCGTTTAAGCGTGTAACATACACTGAAGCAATAGAG-GTACTTGAGA 1165
|||||| ||| |||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1207 GTTGCC-AAAGCCTCGTTTAAGCGTGTAACATACACTGAAGCAATAGAGCG-ACTTGAGA 1264
Query 1166 AAGCTGTAGCTGAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGAGGAAAATGGACTTGG 1225
||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||
Sbjct 1265 AAGCTGTAGCTCAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGTGGGGAATCGACTTGG 1324
Query 1226 CCTCAGAGCATGAAAGATACTTGACAGAGGTTGAGTATGATCAAAAGCCAATAATTGTTT 1285
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1325 CCTCAGAGCATGAAAGATACTTGACAGAGGTTGAGTTTGATCAAAAGCCAATAATTGTGT 1384
Query 1286 ATAACTACCCGAAAGAAATCAAAGCTTTTTACATGAGACTTAACGATGATGAG 1338
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1385 ATAACTACCCGAAAGGAATCAAAGCTTTTTACATGAGACTTAACGATGATGAG 1437
> AT5G56680.1 | Symbols: SYNC1, EMB2755, SYNC1 ARATH | Class II
aminoacyl-tRNA and biotin synthetases superfamily protein |
chr5:22936543-22939036 FORWARD LENGTH=2016
Length=2016
Score = 931 bits (504), Expect = 0.0
Identities = 774/900 (86%), Gaps = 35/900 (4%)
Strand=Plus/Plus
Query 2 TGCAGAA-AGCGCAATTCTCCGACCGGGTTTTGATTCGATCGA-TTT---T-GA---G-C 51
|||| || ||| |||||||| ||||||||||||||||| ||| ||| | || | |
Sbjct 173 TGCA-AAGAGCTCAATTCTCTAACCGGGTTTTGATTCGAACGATTTTGGATCGACCTGAC 231
Query 52 GGCGGAGCTAAACTTGCCGGTCAAAAGGTTAGAATCGGCGGTTGGGTTAAAA-CCGGAAG 110
||||||||| ||| |||||||||| |||| ||||||| ||||||| ||||| |||||||
Sbjct 232 GGCGGAGCTGGACTCGCCGGTCAAACGGTTCGAATCGGTGGTTGGG-TAAAATCCGGAAG 290
Query 111 ACAACAAGGGAAAGGGAA-ATTTGCTTTCCTTGAGGTTAACGATGGATCTTGTCCAGCGA 169
| | ||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||||
Sbjct 291 AGATCAAGGGAAA-AGAACGTTTTCTTTCCTTGCGGTTAACGATGGATCTTGTCCAGCGA 349
Query 170 ATCTTCAGGTTATGGTTGATTCTTCTCTTTATGATCTCTCTAGGTTAGTTGCGACGGGAA 229
|||||||||||||||| ||| | ||||| |||||| |||||| || ||||| |||||||
Sbjct 350 ATCTTCAGGTTATGGTGGATCCGTCTCTCTATGATGTCTCTAACTTGGTTGCTACGGGAA 409
Query 230 CTTGTGTTACTGTTGATGGAGTTTTGAAGGTTCCACCTGAA-GGTAAAGGTTTGAAACAG 288
||||||| ||||||||||||||||||||||||||||| ||| ||||||||| | | |||
Sbjct 410 CTTGTGTGACTGTTGATGGAGTTTTGAAGGTTCCACC-GAAAGGTAAAGGTACGCAGCAG 468
Query 289 -AGTATCGAGCTTAACGTTGAGA-GTGTGATTGATGTGGGAACTGTTGATCCGACTAAGT 346
|| || ||||||||||||| || | ||||||||||| ||||| || ||| || ||||||
Sbjct 469 CAG-ATTGAGCTTAACGTTGTGAAG-GTGATTGATGTTGGAACGGTGGATGCGTCTAAGT 526
Query 347 ATCCGCTTCCTAAGACTAAGTTGACTCCTGAGT-TTCTCAGAGATTTGCTTCATCTTCGT 405
|||| |||||||||||||||||||||| |||| || | |||||| ||||||||||||||
Sbjct 527 ATCCACTTCCTAAGACTAAGTTGACTCTTGAGACTT-TGAGAGATGTGCTTCATCTTCGT 585
Query 406 TCCAGGACTAACTTGATCTCAGCAGTGGCAAGAATCCGTAATGCGCTTGCTTTTGCGACC 465
|| || ||||||| ||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct 586 TCTAGAACTAACTCGATCTCAGCTGTTGCAAGAATTCGTAATGCTCTTGCTTTTGCGACT 645
Query 466 CACAGtttttttCAAGAACATGGTTTCCTTTACATTCACACTCCTATCATCACAACAAGT 525
|||||||| |||||||| ||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 646 CACAGTTTCTTTCAAGAGCATAGTTTCCTTTACATTCACACTCCTATCATCACGACAAGT 705
Query 526 GATTGTGAAGGAGCTGGTGAAATGTTCCAAGTAACAACCTTGATCAATCACACTGAGAGG 585
||||||||||| ||||||||||||||||||| |||||| ||||||||| |||||||||||
Sbjct 706 GATTGTGAAGGTGCTGGTGAAATGTTCCAAGCAACAACTTTGATCAATTACACTGAGAGG 765
Query 586 GTTG-AGCAGGATCTCATTGATAACCCTCCACCCACTGAGGCTGATGTTGAAGCGGAGAG 644
||| ||||||||||||||||||||||||| || |||||||||||||||||||| | |||
Sbjct 766 -TTGGAGCAGGATCTCATTGATAACCCTCCGCCTACTGAGGCTGATGTTGAAGCTGCGAG 824
Query 645 ACTTATTGTCAAGGAGAGAGGTGAAGCTGT-GTCGCG-A-CTGAAAGCTGCCAAGGCAAG 701
|| ||||||| ||||||||| || ||| || ||| | |||||||||||||| |||||
Sbjct 825 GCTCATTGTCATTGAGAGAGGT-AA--TGTTGTAGCGGAACTGAAAGCTGCCAAAGCAAG 881
Query 702 CAAGGAAGAGATCACTGCTTCCGTTGCTCAACTTACTATAGCAAAGGCGTGTTTAGCTCA 761
|||||||| |||||||||| | |||||| |||||| |||||||||| | ||| |||||
Sbjct 882 CAAGGAAGCGATCACTGCTGCTGTTGCTGAACTTAAAATAGCAAAGGAGACTTTTGCTCA 941
Query 762 TGTTGAAGAGAGGTCAAGGCTTA-AGCCTGGATTACCTAAAAAAGATGGAAAAATTGATT 820
| |||| |||||||| ||||||| | |||||| ||||||| ||||||||||| |||||||
Sbjct 942 TATTGATGAGAGGTCGAGGCTTAGA-CCTGGACTACCTAAGAAAGATGGAAACATTGATT 1000
Query 821 ATTCGGATGATTTCTTTGGCCGTCAAGCTTTCTTGACGGTT-CTGGTCAGTTACAACGTG 879
|||| | ||||||||||| ||||||||||||||||| ||| | ||||| |||||| |||
Sbjct 1001 ATTCCAAGGATTTCTTTGGTCGTCAAGCTTTCTTGACAGTTTCCGGTCAATTACAA-GTG 1059
Score = 507 bits (274), Expect = 1e-142
Identities = 411/475 (87%), Gaps = 17/475 (4%)
Strand=Plus/Plus
Query 870 TTA-CAACGTGTATACATTTGGCCCGACTTTCCGAGCAGAGAACTCTCACACTTCAAGGC 928
||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1079 TTAGCAATGTGTATACATTTGGCCCGACTTTCCGGGCAGAGAACTCTCACACTTCAAGGC 1138
Query 929 AT-TTAGCTGAATTCTGGATGGTTGAGCCTGAAATAGCTTTTGCAGATATACATGACGAC 987
|| || |||||||||||||||||||||||||| || |||||||||||| || | ||||||
Sbjct 1139 ATCTT-GCTGAATTCTGGATGGTTGAGCCTGAGATTGCTTTTGCAGATCTAGAGGACGAC 1197
Query 988 ATGAACTGTGCAGAGGCGTATGTGAAATACATGTGCAACTGGTTGATCAAGAATTGTTCC 1047
||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| |
Sbjct 1198 ATGAACTGTGCAGAGGCGTATGTGAAATACATGTGCAACTGGTTGCTTGAGAAATGTTAC 1257
Query 1048 GATGACATGGATTTTATGGATAAGAATGTT-GA-TGGGGGATGCAC-GAAAAGGCTAAAA 1104
| ||||||||| |||||| ||||||| || || | || ||||| || | ||||||||
Sbjct 1258 GCTGACATGGAACTTATGGCTAAGAAT-TTCGACTCAGG-ATGCATTGACA-GGCTAAAA 1314
Query 1105 ATGGTTGCCGAAACCTC-GTTTAAGCGTGTAACATACACTGAAGCAATAGAGGTACTTGA 1163
|||||||| || || |||| |||| ||||||||||| ||||||||||| |||||||
Sbjct 1315 TTGGTTGCCTCTAC-TCCGTTTGGGCGTATAACATACACTAAAGCAATAGAGCTACTTGA 1373
Query 1164 GAAAGCTGTAGCTGAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGAGGAAAATGGACTT 1223
| ||||||| ||| ||||||||| ||| |||||||| |||||| || ||| |||||
Sbjct 1374 GGAAGCTGTGGCTAAAGGAAAGGAA-TTT--GATAACAATGTGGAGTGGGGAATCGACTT 1430
Query 1224 GGCCTCAGAGCATGAAAGATACTTGACAGAGGTTGAGTATGATCAAAAGCCAATAATTGT 1283
||||| ||||||||||||||||||||||||||| || | |||||||||| | |||||
Sbjct 1431 AGCCTCGGAGCATGAAAGATACTTGACAGAGGTTCTGT-T--TCAAAAGCCACTTATTGT 1487
Query 1284 TTATAACTACCCGAAAGAAATCAAAGCTTTTTACATGAGACTTAACGATGATGAG 1338
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1488 CTATAACTACCCGAAAGGAATCAAAGCTTTTTACATGAGACTTAACGATGATGAG 1542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66013716675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5