BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497362
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78690.1 | Symbols: | Phospholipid/glycerol acyltransferase... 1247 0.0
> AT1G78690.1 | Symbols: | Phospholipid/glycerol acyltransferase
family protein | chr1:29596655-29598629 FORWARD LENGTH=1163
Length=1163
Score = 1247 bits (675), Expect = 0.0
Identities = 766/810 (95%), Gaps = 5/810 (1%)
Strand=Plus/Plus
Query 1 ATGAATTCCTCCCAAGCAAGCTTCTTCGATTTCCCTCTAACACCAATCGTCTGGTCTCGT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2 ATGAATTCCTCCCAAGCAAGCTTCTTCGACTTCCCTCTAACACCAATCGTCTGGTCTCGT 61
Query 61 TTCTAATCGGAGGGAACTTTGAAGCAAATGGGGAGGGTAATGGATTGGGCAGCAAGATCT 120
||||||| |||| |||||||||||| |||||||| | ||||||| |||||||||||||||
Sbjct 62 TTCTAATTGGAGAGAACTTTGAAGCTAATGGGGAAGATAATGGAATGGGCAGCAAGATCT 121
Query 121 GATCATTTGGGAGGAGTTCCAAGGAAAACTGTGATAATGGCTGTTAGTGCATTTGCAAAA 180
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 122 GATCATTTGGGAGGAATTCCAAGGAATACTGTGATAATGGCTGTTAGTGCATTTGCAAAA 181
Query 181 GCGGTAGCGAATCTTTGTAACAAAAGCTCAGTTCACAATGCAGATACTCTTATGAATCTT 240
|| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 182 GCAGTAGCAAATCTTTGCAATAAAAGCTCAGTTCACAATGCAGATACTCTTATGAATCTT 241
Query 241 GTCCGGTCAAGACCACCGGGTGTTCCTCTCATCACTGTTAGTAATCACATGTCGACTTTG 300
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 GTCCAGTCAAGACCACCTGGTGTTCCTCTCATCACTGTTAGTAATCACATGTCGACTTTG 301
Query 301 GATGATCCAGTTATGTGGGGGGCATTCAAGGGTCTCCTTTCCTTAGATCCAGAATTGGCT 360
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 302 GATGATCCAGTAATGTGGGGGGCATTTAAGGGTCTCCTTTCCTTAGATCCAGAATTGGCT 361
Query 361 CGGTGGGTTCTTGCTGCGGAGGACATATGTTTCAGGAACCCTATCTTCTCCTACATTTTC 420
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 362 CGGTGGGTTCTTGCTGCAGAGGATATATGTTTCAGGAACCCTATATTCTCCTACATTTTC 421
Query 421 CGCACTGGAAAATGCATACCTATAACCAGAGGTGGTGGAATCTACCAAGAACACATGAAT 480
|||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 422 CGCACTGGAAAATGTATACCTATAACTAGAGGTGGTGGAATCTACCAAGAAAACATGAAT 481
Query 481 GAAGCTCTCCAGCGATTCAAAGATGGATCTTGGCTGCATACCTTTCCAGAGGGAAAGGTG 540
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 482 GAAGCTCTCCAGCGATTAAAAGATGGATCTTGGCTGCATACCTTCCCAGAGGGAAAGGTG 541
Query 541 TTTCAAGAAGATGTTCCTATAAGACGACTAAAATGGGGAACTGCAAGCCTCATCGCCCGT 600
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 542 TTTCAAGATGATGTTCCTATAAGACGACTTAAATGGGGAACTGCAAGCCTCATCGCCCGT 601
Query 601 TGCCCAGTTACCCCAATCGTCTTGCCAATAATTCACCGTGGTTTTGAGGAGATGTTGCCG 660
| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 602 TCCCCAGTTACCCCAATCGTTTTGCCAATAATTCACCGTGGTTTTGAGGAGATGATGCCG 661
Query 661 GAGAACTACAACAATGGACGAAGACCACTGGTACCACTGT-GCAATAAAGACCTTAAAGT 719
||||||||||| ||||||||||||||||||||||| || | || ||| ||||||||||
Sbjct 662 GAGAACTACAATAATGGACGAAGACCACTGGTACCGTTGCCG-AACAAACACCTTAAAGT 720
Query 720 TGTGGTTGGTGAACCACCTGAGTTTGATGTTCCCATGATGGTTGAGACTGCTGTCTTG-- 777
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 721 TGTGGTTGGTGAACCAATTGAGTTTGATGTTCCAATGATGGTTGAGACTGCTGTCTTGGA 780
Query 778 CTCCCGCCATGTAACCC-TCCTCTTCAAGA 806
||||||||||||||||| ||||||||||||
Sbjct 781 CTCCCGCCATGTAACCCCTCCTCTTCAAGA 810
Score = 372 bits (201), Expect = 5e-102
Identities = 250/274 (91%), Gaps = 2/274 (1%)
Strand=Plus/Plus
Query 825 CCTCTTCATAGCTCTTTCCGAGAAAATCCAATCCTCCTTGGAAACATTGAGACTCTTAGC 884
||||| ||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 871 CCTCTACATAGCTCTGTCCGAGAAGATTCAATCCTCCTTGGAAACATTGAGACTCTTAGC 930
Query 885 CAAGCGGTTGTAACTTCCGCCGGCAAACTTCAAATCAGAATCCGGTTCATAATTTTTTAA 944
||||||||||| ||||||||||| |||||||| |||| ||||||||||| || |||| ||
Sbjct 931 CAAGCGGTTGTGACTTCCGCCGGGAAACTTCATATCAAAATCCGGTTCACAACTTTTAAA 990
Query 945 GTTCCGGTTAAGATCCGCAATGGTAATCAAATATTATCtttttttttAATTTTCTGAAGC 1004
||||||||| |||| ||| ||||||||||||||||||| ||| || ||||| |||||||
Sbjct 991 GTTCCGGTTTAGATTCGCCATGGTAATCAAATATTATC--TTTATTCAATTTCCTGAAGC 1048
Query 1005 TGATAAAAAATTATATAAGTATGATAATTAAATAACTCGCATTTTAAATTATTTTATCGA 1064
||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1049 TGAGAAAAAATTATATAACTATGAAAATTTAATAACTCGCATTTTAAATTATTTTATCGA 1108
Query 1065 CTAGGATATATAGCAACCCGCAATAATGAATGTT 1098
|||||||||||||||||||||||||||| |||||
Sbjct 1109 CTAGGATATATAGCAACCCGCAATAATGTATGTT 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5