BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497363
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21970.1 | Symbols: LEC1, EMB 212, EMB212, NF-YB9 | Histone ... 1404 0.0
> AT1G21970.1 | Symbols: LEC1, EMB 212, EMB212, NF-YB9 | Histone
superfamily protein | chr1:7727577-7729617 REVERSE LENGTH=936
Length=936
Score = 1404 bits (760), Expect = 0.0
Identities = 878/932 (94%), Gaps = 20/932 (2%)
Strand=Plus/Plus
Query 1 AATTATTTTATAAAGAAC----aaaaaaaaaGACGGCAGAGAAACAATGGAACGTGGAGC 56
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATTATTTTATAAAGAACAAAAAAAAAAAAAGACGGCAGAGAAACAATGGAACGTGGAGC 60
Query 57 TCCCTTCTCTCACTATCAGCTACCCAAATCCATCTCTGAATTGAATTTGGACCAGCACAG 116
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 61 TCCCTTCTCTCACTATCAGCTACCAAAATCCATCTCTGAATTGAACTTGGACCAGCACAG 120
Query 117 ---TAACCCAAACCCAATGACCAGCTCAGTCGTCGTAGCCGACGCCAGTGACAACAACAA 173
||||||| ||||||||||||||||||||| ||||||| |||| ||||||| |||||
Sbjct 121 CAACAACCCAACCCCAATGACCAGCTCAGTCGTAGTAGCCGGCGCCGGTGACAAGAACAA 180
Query 174 GGGTATCGTAGCCCAGCAGCAACCACCATGTATGGCTCGTGAACAAGACCAATACATGCC 233
|||||||| | ||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 181 TGGTATCGTGGTCCAGCAGCAACCACCATGTGTGGCTCGTGAGCAAGACCAATACATGCC 240
Query 234 AATCGCAAACGTCATAAGGATCATGCGTCAAACCTTGCCGTCGCACGCTAAAATCTCTGA 293
|||||||||||||||||| ||||||||| ||||||| ||||| ||||| |||||||||||
Sbjct 241 AATCGCAAACGTCATAAGAATCATGCGTAAAACCTTACCGTCTCACGCCAAAATCTCTGA 300
Query 294 CGACGCGAAAGAAACGATTCAAGAATGTGTCTCCGAGTACATTAGCTTCGTGACCGGTGA 353
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 CGACGCCAAAGAAACGATTCAAGAATGTGTCTCCGAGTACATCAGCTTCGTGACCGGTGA 360
Query 354 AGCCAATGAGCGTTGCCAACGTGAGCAACGTAAGACCATAACTGCTGAAGATATCCTTTG 413
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGCCAACGAGCGTTGCCAACGTGAGCAACGTAAGACCATAACTGCTGAAGATATCCTTTG 420
Query 414 GGCTATGAGCAAGCTTGGGTTCGATAACTACGTGGATCCACTCACCGTGTTCATTAACCG 473
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 421 GGCTATGAGCAAGCTTGGGTTCGATAACTACGTGGACCCCCTCACCGTGTTCATTAACCG 480
Query 474 GTACCGTGAGATAGAGACCGATCGTGGGTCTGCACTTAGAG---AGCCACCGTCGTTGAG 530
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 481 GTACCGTGAGATAGAGACCGATCGTGGTTCTGCACTTAGAGGTGAGCCACCGTCGTTGAG 540
Query 531 ACAGGCCTATGGAGGAAATGGTATTGGGTTTCACGGCCCATCTCATGGCCTACCTCCTCC 590
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACAAACCTATGGAGGAAATGGTATTGGGTTTCACGGCCCATCTCATGGCCTACCTCCTCC 600
Query 591 TGGTCCTTATGGTTATGGTATGTTGGACCAATCCATGGTTATGGGAGGTGGTCGGTACTA 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGGTCCTTATGGTTATGGTATGTTGGACCAATCCATGGTTATGGGAGGTGGTCGGTACTA 660
Query 651 CCAAAACGGGTCGTCGGGTCAGGATGAATCCAGTGCTGGTGGTGGCTCTTCGTCTTCCAT 710
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 661 CCAAAACGGGTCGTCGGGTCAAGATGAATCCAGTGTTGGTGGTGGCTCTTCGTCTTCCAT 720
Query 711 TAACGGAATGCCGGCTTTTGACTCAT-ATGGTCAGTATAAGTGAAGATGGAATTATTCTC 769
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 721 TAACGGAATGCCGGCTTTTGAC-CATTATGGTCAGTATAAGTGAAGATGGAATTATTCTT 779
Query 770 CATTTTTATGCATTATCTATTCAAAACATGTGTCTGGATAGATATTTTTATTTTTATGTC 829
||||||||| || || |||||||||||||| |||||||||||||| |||||||||||
Sbjct 780 CATTTTTAT--AT---CTGTTCAAAACATGTGTTTGGATAGATATTTT-ATTTTTATGTC 833
Query 830 TTATCAATAACATTTCTATATAATGTTGCTTCTTTAAGGAAA-GTGTTGAATTTCAATAC 888
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 834 TTATCAATAACATTTCTATATAATGTTGCTTCTTTAAGGAAAAGTGTTGTATTTCAATAC 893
Query 889 TTTTTGAGAA-CTGATTTATATATGCAAATGA 919
||| |||||| |||||||||||||||||||||
Sbjct 894 TTTATGAGAAACTGATTTATATATGCAAATGA 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44909327418
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5