BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497366
Length=1765
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07360.1 | Symbols: PUB9, ATPUB9 | plant U-box 9 | chr3:2354... 2651 0.0
> AT3G07360.1 | Symbols: PUB9, ATPUB9 | plant U-box 9 | chr3:2354721-2356854
FORWARD LENGTH=1787
Length=1787
Score = 2651 bits (1435), Expect = 0.0
Identities = 1630/1721 (95%), Gaps = 25/1721 (1%)
Strand=Plus/Plus
Query 1 CTTCTTCTCTCTTCCTCATATAATATTTATTACTCTCTCTTTCac-aa-acacagaaaca 58
||||||||||||||||| ||||||||||||||||||||||| || ||||||||| |
Sbjct 1 CTTCTTCTCTCTTCCTC-----ATATTTATTACTCTCTCTTTCACAAACACACAGAAA-A 54
Query 59 -aaataaataaaaaatataattaatgtgagaaaatcaattcaaaaatTTCGACATACGTA 117
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 55 TAAATAAAT--AAAAT-TAATTAATGTGAGAAAATCAATTCAAAAATTTGGACATACGTA 111
Query 118 --ATCTGAGAG--GAAGGGTTGGGTGAATACCGGC-GGTGGATCCGACGGCGATGGCGAA 172
||||||||| |||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 112 TCATCTGAGAGAAGAAGGGTTTGGTGAATACCGGCGGGTGGAACCGACGGCGATGGCGAA 171
Query 173 GACCGGTGTTTTCGATTCGGATCCGACGGCGATTGCGAAAGCCAAAGAACTGAAGCGTGA 232
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 172 GACCGGTGTTTTCGATTCGGATCCGACGGCGATTGCTAAAGCCAAGGAACTGAAGCGTGA 231
Query 233 GATGAAGAAGCTGCTGATTAAGATCGAAGATGAAGATGACTTTGGG-GTTCAGACAATTG 291
|||||||||| |||||||||||||||| || |||||||| |||||| |||||||| ||||
Sbjct 232 GATGAAGAAGTTGCTGATTAAGATCGATGACGAAGATGA-TTTGGGTGTTCAGACGATTG 290
Query 292 ATCAGTTACAAGAGGCTTTGTCTGCGTTGAGAGAAGCGACGATGAGGAAGATGGCGAAAT 351
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 ATCAGTTACAGGACGCTTTGTCTGCGTTGAGAGAAGCGACGATGAGGAAGATGGCGAAAT 350
Query 352 CGTCTTCACTGGAGATGCTCGAGACTGTGTCTTGTCCTGAGGAGTTTCGTTGTCCTCTCT 411
| || || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CTTCCTCGTTAGAGATGCTCGAGACTGTGTCTTGTCCTGAGGAGTTTCGTTGTCCTCTCT 410
Query 412 CTAATGAGCTTATGAGGGATCCCGTCGTTTTGGCTTCTGGTCAGACATACGACAAGTTAT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CTAATGAGCTTATGAGGGATCCCGTCGTTTTGGCTTCTGGTCAGACATACGACAAGTTAT 470
Query 472 TTATCCAGAAATGGTTGAGCTCAGGCAACAGAACATGTCCCAAGACTCAGCAAGTTCTGC 531
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 471 TTATCCAGAAATGGTTGAGCTCAGGGAACAGAACATGTCCCAAGACTCAGCAAGTTCTGC 530
Query 532 CTCACACGGCTTTAACACCTAATCTCTTAATCCGTGAAATGATCTC-AAGATGGTGCAAG 590
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 531 CTCACACGGCTTTAACACCTAATCTCTTAATCCGTGAAATGATCTCGAA-ATGGTGCAAG 589
Query 591 AAGATCGGGCTAGAGACGAAGAACCAATATCATCCCAACCTTGTAAATGAAGAGGAAGCT 650
|||| |||||| |||||||||| |||||||||||||||||||||||||||||| ||| ||
Sbjct 590 AAGAACGGGCTTGAGACGAAGAGCCAATATCATCCCAACCTTGTAAATGAAGATGAAACT 649
Query 651 GTCACAAGATCAGATCGTGAGATTTTCAATTCCTTGCTCTGTAAAGTCTCTTCTTCGAAC 710
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GTGACAAGATCAGATCGTGAGATTTTCAATTCCTTGCTCTGTAAAGTCTCTTCTTCGAAC 709
Query 711 CTTCAAGATCAAAATTCAGCTGCCAAGGAGCTAAGACTTCTGACCAAGAAAGGCACTGAG 770
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 710 CTTCAAGATCAAAAATCAGCTGCCAAGGAGCTAAGACTTCTGACCAGGAAAGGCACTGAG 769
Query 771 TTCCGAGCTCTTTTTGGTGAATCTCCGGATGAAATCACCCGGTTGGTTAATCCCTTGTTA 830
||||||||||||||||| |||||||||||||| |||||| ||||||| ||||||||||||
Sbjct 770 TTCCGAGCTCTTTTTGGCGAATCTCCGGATGAGATCACCAGGTTGGTGAATCCCTTGTTA 829
Query 831 CACGGGTCAAACCCAGATGAGAAGCTTCAAGAAGATGTGGTCACAACATTGTTGAACATA 890
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 830 CACGGGTCAAACCCAGATGAGAAGCTTCAAGAAGATGTGGTTACAACATTGTTGAACATA 889
Query 891 TCCATACATGATGACAGCAACAAGAAGCTCGTCTGCGAAAATCCTTGTGTGATTCCTCTC 950
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 890 TCAATACATGATGACAGCAACAAGAAGCTCGTCTGCGAAAATCCTAATGTGATTCCTCTC 949
Query 951 CTTATCGATGCATTGAGGCGTGGAACGGTAGCCACGAGAAGCAATGCAGCTGCGGCGATC 1010
|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 950 CTTATCGATGCATTGAGGCGTGGAACAGTCGCCACGAGAAGCAATGCAGCTGCAGCGATC 1009
Query 1011 TTTACTCTGTCGGCACTCGATTCGAACAAAGTACTTATAGGGAAGTCCGGAATCCTGAAA 1070
|| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1010 TTCACTCTGTCAGCTCTCGATTCAAACAAAGTACTTATAGGGAAGTCCGGAATCCTGAAA 1069
Query 1071 CCGCTTATTGATCTCCTAGAAGAAGGGAATCCGTTAGCTATCAAAGACGTAGCTGCAGCG 1130
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1070 CCGCTTATCGATCTCCTAGAAGAAGGGAATCCATTAGCTATCAAAGACGTAGCTGCAGCG 1129
Query 1131 ATCTTCACTCTTTGTATAGCTCATGAAAACAGGAGTAGAGCTGTGAGAGACGGAGCTGTT 1190
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1130 ATCTTCACTCTTTGTATAGCCCATGAGAACAGGAGTAGAGCTGTGAGAGACGGAGCTGTT 1189
Query 1191 AGGGTTTTAGGTAAGAAAATCTCAAATGGGTTGTACGTCGATGAGCTTTTAGCTATATTA 1250
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1190 AGGGTTTTAGGTAAGAAAATCTCGAATGGGTTGTACGTTGATGAGCTTTTAGCTATATTG 1249
Query 1251 GCAATGCTTGTTACTCACTGGAAGGCTGTGGAGGAATTGGGTGAGCTCGGTGGGGTTTCT 1310
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 GCAATGCTTGTTACTCACTGGAAGGCTGTGGAGGAATTGGGTGAGCTCGGTGGGGTTTCA 1309
Query 1311 TGGTTGCTGAAGATAACTCGAGAGAGCGAGTGCAAGCGAAACAAAGAGAATGCGATAGTG 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TGGTTGCTGAAGATAACTCGAGAGAGCGAGTGCAAGCGAAACAAAGAGAATGCGATAGTG 1369
Query 1371 ATACTGCATACTATATGTTTCAGCGACAGGACAAAGTGGAAGGAGATCAAAGAAGAGGAG 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 ATACTGCATACTATATGTTTCAGCGACAGGACAAAGTGGAAGGAGATCAAAGAAGAGGAG 1429
Query 1431 AATGCTCATGGAACGATAACAAAGCTTTCGCGTGAAGGAACTTCAAGGGCACAGAGGAAA 1490
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1430 AATGCTCATGGAACGATAACAAAGCTTTCGCGTGAAGGAACTTCAAGGGCGCAGAGGAAA 1489
Query 1491 GCAAATGGGATCTTGGACAGACTGAGAAAAGCTATGAATCTCACTCATACAGCCTGAGAG 1550
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 GCAAACGGGATATTGGACAGACTGAGAAAAGCTATGAATCTCACTCATACAGCCTGAGAA 1549
Query 1551 AAGCCTTGGATTCGGCAATGTAAATTATCTAAAATCCTGTT-CTAACTT--ACTTTATTT 1607
|||||||| | || ||||||||||||| |||||||| |||| || || |||||||||
Sbjct 1550 AAGCCTTGAAATCTGCAATGTAAATTACCTAAAATCTTGTTTCTTTTTTTTACTTTATTT 1609
Query 1608 GGCTTTAAGAATTTTTGTAAATTATTCATATCTTTAGGATCTGAATGATTTTATGGTTTT 1667
|||| |||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 1610 GGCTGTAAGAATTTTTGTAAATTATTCATATCTTTAGGATCTGAATGGTTAT-TGGTTTT 1668
Query 1668 CGTATATGAGATGTAAGTAGAAATCTGTGTGGATAGGTTTT 1708
||||| ||||||||||||||||||||||||| |||| ||||
Sbjct 1669 CGTATGTGAGATGTAAGTAGAAATCTGTGTGAATAGTTTTT 1709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87298747755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5