BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497370
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34620.1 | Symbols: | Mitochondrial transcription terminati... 1511 0.0
> AT2G34620.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr2:14577174-14578288 FORWARD
LENGTH=1019
Length=1019
Score = 1511 bits (818), Expect = 0.0
Identities = 929/983 (95%), Gaps = 6/983 (1%)
Strand=Plus/Plus
Query 1 GGCCACATCATCTCTTTCCACCATGTCTGCAGCACTGAGCTCGTCTCTCTACATTTCACC 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1 GGCCACATCATCTCTTTCCACCATGTCTGCAGCATTGAGCTCGTCTCTCTACATTTCCCC 60
Query 61 AAAGAAACCATCATGTCCACAACAATCTCAATCCACAATCTTATCCACGAAACCCACGTC 120
||||||||| ||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct 61 AAAGAAACCTTCATGTCCACAACAATCTCAATCCACATTCTTATCCACGAAACCAACCAC 120
Query 121 CATCAAAACCACTCTACATAGCCACCCTCTCTTCTCTGTAGCCGATCAGACAGTAACCCT 180
||||||||||| ||| |||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 121 CATCAAAACCAATCTCCATAGCCATCCTCTCTTCACTGTAGCTGATCAGACAGTAACCCT 180
Query 181 CCAGATGAAAGAGAAGATCCTCTGTCTCGAGCTCATGGGAATTGACTCAGGCAAAGCCCT 240
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 181 CCAGATGAAAGAGAAGATCCTCTGTCTCGAGCTAATGGGAATTGACTCAGGAAAAGCCCT 240
Query 241 CTCTCTCAACCCATGTCTCTGCTCAGCCTCCCTTGACTCCATCGAATCCGTCCTCCATTT 300
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 241 TTCTCTCAACCCATGTCTCTGCTCAGCCCCCCTTGACTCCATCCAATCCGTCCTCCATTT 300
Query 301 CCTCCAATCAAAAGGAATCTACCCAAATGACCTCCCAAGAATCTTGGGGATGTGTCCTAA 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCTTCAATCAAAAGGAATCTACCCAAATGACCTCCCAAGAATCTTGGGGATGTGTCCTAA 360
Query 361 GATCCTCACTTCCGACGTCAGAACAGAACTCCACCCTGTCTTCATGTTCCTGTCGAATGA 420
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 361 GATCCTCACTTCCGACGTCAGAACAGAACTGTACCCTGTTTTCATGTTCCTGTCGAATGA 420
Query 421 TCTCCATGTCCCTGAGAATGCGTTCAGAAGAGTGATCAAGAAATGTCCAAGGCTTCTGAT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 421 TCTCCATGTCCCTGAGAATGCGTTCAGAAGAGTGATCAAGAAATGTCCAAGGCTCCTTAT 480
Query 481 TAGCAGTGTAGAAGACCAGCTCAAGCCTGCTCTTTTCTACTTGCAGAGACTTGGTTTCAA 540
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||
Sbjct 481 TAGCAGTGTAGAAGACCAGCTCAAACCTGCTCTCTTCTACTTGCAGAGACTTGGTCTCAA 540
Query 541 GGATCTTGAAGCTCTTGCTTACCAAGATCCTATCTTACTGGTGTCTAGTGTTGAACACAC 600
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 GGATCTTGAAGCTCTTGCTTACCAAGATCCTATCTTGTTGGTGTCTAGTGTTGAACACAC 600
Query 601 TCTCATCCCAAAACTTAGATTCTTGGAGAGTATAGGGTACTCGAGAGCAGAAGCGATTGG 660
|||||||||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||
Sbjct 601 TCTCATCCCAAAGCTTAGATTCTTGGAGAGTATAGGGTTCTCAAGACCAGAAGCGATTGG 660
Query 661 AATGATACTTAGATGTCCAGC-TCTATTCACATTCAGCATAGAGAACAATTTCAAACCAA 719
|||||| || ||||||||||| | ||||||||||||||||||||||||| ||||||||||
Sbjct 661 AATGATCCTAAGATGTCCAGCAT-TATTCACATTCAGCATAGAGAACAACTTCAAACCAA 719
Query 720 AACTGGATTACTTCATGAGTGGGATCAAAGGAAAACTGGAGAATCTAAAGGAGTTTCCAC 779
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 720 AACTGGATTACTTCATGAGTGAGATCAAAGGAAAACTAGAGAATCTAAAGGAGTTTCCAC 779
Query 780 AGTATTTTGCCTTCAGCCTAGAGAAAAGGATAAAGCCAAGACACTTAGAATCAAAAGAGA 839
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 780 AGTATTTTGCCTTCAGTCTAGAGAAAAGGATAAAGCCAAGACACTTAGAATCAATGGAGA 839
Query 840 GAGGTTTAGAGTTGCCATTGTCATTGATGCTTAAGAGCACTGATGAAGAATTCGAGCAAT 899
|||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
Sbjct 840 GAGGATTAGAGTTGCCACTGTCATTGATGCTTAAGAGCACTGATGAAGAGTTCGAGCAGT 899
Query 900 TGCTCACAAAGGCCTCTTCAGTTGCAAACG-GATAACATTTATTGTATATGTGG-GAATG 957
|||||||||| |||||||||| ||||||| | |||||||||||||||| |||| |||||
Sbjct 900 TGCTCACAAACCCCTCTTCAGTGGCAAACGTG-TAACATTTATTGTATA-GTGGTGAATG 957
Query 958 TTAATGATTGTGTTCATAGCTTT 980
||| |||||||||||||||||||
Sbjct 958 TTATTGATTGTGTTCATAGCTTT 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48827590884
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5