BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497372
Length=4746
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52290.1 | Symbols: SHOC1 | shortage in chiasmata 1 | chr5:2... 6551 0.0
> AT5G52290.1 | Symbols: SHOC1 | shortage in chiasmata 1 | chr5:21230353-21236554
REVERSE LENGTH=4785
Length=4785
Score = 6551 bits (3547), Expect = 0.0
Identities = 4107/4374 (94%), Gaps = 52/4374 (1%)
Strand=Plus/Plus
Query 381 GGTTAAATATGTCGAATTAGATACTATCTTACAGAACTCAAATGACA-TCCATCGAAGGA 439
||||||||||| | | ||||| |||| | ||||||||||| |||| || | | | ||
Sbjct 456 GGTTAAATATGAGGGGTCAGATATTATCCTGCAGAACTCAAAGGACATTCAAGAGCA-GA 514
Query 440 TTTATTCTGTTGATTACATTTCTTCTGATTACTTCATAGAGAATAATACTTCGGCAACAG 499
|||||||||||||||||||| ||||||||||||| | |||||| || ||||| | | |||
Sbjct 515 TTTATTCTGTTGATTACATTCCTTCTGATTACTTTACAGAGAACAACACTTCTGTAGCAG 574
Query 500 AAAATGAATGC-TCCAGCAAGAATCAACCATGGTTCAAAGATGCCAGATTTCCCCTTCTA 558
||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 575 AAAATGAATGCTTCC-GCAAGATTCAACCATGGTTCAAAGATGCCAGATTTCCCCTTCTA 633
Query 559 GAAGTGGATGAAGTAAACTTGAGAGAACTATCGAGCTTATCTATGCTTGATAAAGTATTT 618
||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||
Sbjct 634 GAAGTGGATGAAGTAAACTTGAGCGAACTATCAAGCTTATCTGTGCTTGATAAAGTATTT 693
Query 619 ACTGTTCTTGAAACAATTGAACCCCAAGACAAGAACGCAGCGAGTGCTCTCATTATCAAT 678
||||||||||| || |||||||||||||||| || |||| |||| ||||||||||||||
Sbjct 694 ACTGTTCTTGAGACGATTGAACCCCAAGACACTAATGCAGGGAGTTCTCTCATTATCAAT 753
Query 679 TCTAATGACCTTATAGGCTCTAAGGGTTATGATCTATTGGATATCCTCTCTACGGATTGC 738
||||| || ||||||||||| |||| |||||||||||||||| | |||||||||||||||
Sbjct 754 TCTAAGGAGCTTATAGGCTCAAAGGATTATGATCTATTGGATGTACTCTCTACGGATTGC 813
Query 739 TATTTGAACAAAAGTGGTCAATCTGATGTGGGGCCAGAGGATGGATTTTCT-AAAGTGGA 797
||||||||||| ||||| ||||||||||||| |||||||||| ||||||| ||| ||||
Sbjct 814 TATTTGAACAAGAGTGGCCAATCTGATGTGGTACCAGAGGATGAATTTTCTGAAA-TGGA 872
Query 798 TATAGTTAATATCCTGGAAATATCAAATGCTGAGGAAAATTTTCTGTTTGAACAACAGGG 857
|||||| | |||||||||||||||||||||||||| || ||| |||||
Sbjct 873 TATAGTGACTATCCTGGAAATATCAAATGCTGAGG--AA-------TTT------CAGGG 917
Query 858 AAAGGTGGCTCTCCCAGTAACTTTTGAGGAATTTCAGATCCTGGATGTGGAGATATCTGA 917
|||||||||| | |||||||||| ||||||||| ||||||||||||||||| || |||||
Sbjct 918 AAAGGTGGCTGTACCAGTAACTTATGAGGAATTCCAGATCCTGGATGTGGATATCTCTGA 977
Query 918 TGTTTTTGACATCTTCCTTTGTCTTCAAAAAGCCATTGAACCAGAAATATGTTATGGGAT 977
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 978 TGTTTTTGATATCTTCCTTTGTCTTCAAAAAGCCATTGAACCAGAAATCTGTTACGGTAT 1037
Query 978 GTTTAGTAAAGAGATGAACTTCAAAAATTTCGATGAATTAGTTGTCAGTTCTGAACTTGC 1037
||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1038 GTTCAGTAAAGAGATGAACTTCAAGGATTTCGATGAATTAGTTGTCAGTTCCGAACTTGC 1097
Query 1038 CTTCACAGATGATGCCTTCAAGTCTCTGCCTACTCCTATTTTACATGATTATGAGGTGAC 1097
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1098 CTTCACAGATGATGCCTTCAAGTCTTTGCCTACTCCTATTTTACATGATTATGAGATGAC 1157
Query 1098 AAGATCTCTGGATCTCATTTATGAGGATGTTTTGTCAAAGATCAAGCCTCAATCCTTGTC 1157
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 AAGATCTCTGGAGCTCATTTATGAGGATGTTTTGTCAAAGATCAAGCCTCAATCCTTGTC 1217
Query 1158 TGCTTCAAATGACATATACTTGCCCTGGAACCTTCTTGAGGAAAGAAACCACAACCATTG 1217
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1218 TGCCTCAAATGACATATACTTGCCGTGGAACCTTCTTGAGGAAAGAAACCACAACCATTG 1277
Query 1218 TGATTATCCGTTTGAAGAAATAGTTACACTCAACATTGATTTTAAGTGGGAATCTTCAGA 1277
|||||||||||||||||||||||||||| |||||||||||| ||| |||||| |||||||
Sbjct 1278 TGATTATCCGTTTGAAGAAATAGTTACATTCAACATTGATTATAACTGGGAAGCTTCAGA 1337
Query 1278 AGGAGACAAATGGGTTTATGATTTCATTTTCTCTGAAGATGCTTTCAGCGAGCCACTTGT 1337
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1338 AGGAGACAAATGGGTTTATGATTTCATTTTCTCTGAAGATGCTTTCTGCGAGCCACTTGT 1397
Query 1338 AGAGAAATGCACTGAACCTTTCTATGGTATATCTACCCTTGATGAGCATGCTCCTGTTAA 1397
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1398 AGAGAAATGCACTGAACCTTTCTATGGTATATCTAACCTTGATGAGCATGCTCCTGTTAA 1457
Query 1398 TACTTCTCATGGGTTATTGGAAAACCCTTTCCAAAAAACAGGAGCCAGGGATTGTGGAGT 1457
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1458 TACTTCGCATGGGTTATTGGAAAACCCTTTCCAAAAAACAGGAGCAAGGGATTGTGCAGT 1517
Query 1458 GGATGATAATGCTAAGAAGGCTACGTTGTTGTTCAAATCAATGTCTGCGTTTGATGACTT 1517
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1518 GGATGATAATGCTAAGAAGGCTACGCTGTTGTTCAAATCAATGTCTGCTTTTGATGACTT 1577
Query 1518 AACCTTTTTCATGGATCCTCAGAAGGCTGTGATTGAAGATTATCTCGGGTCTAGAGTAGA 1577
|||||||||||||||||| |||||||||||||||||||| |||||| ||||||||| ||
Sbjct 1578 AACCTTTTTCATGGATCCGAAGAAGGCTGTGATTGAAGATAATCTCGAGTCTAGAGTCGA 1637
Query 1578 AGCTGCTAAGACTGCCAACCATAAATTTATGTCTATTGACTCGAAGGCTTCATGTATATC 1637
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1638 AGCTGCTAAGACTACCAACCATAAATGTATGTCTATTGACTCGAAGGCTTCATGTAGATC 1697
Query 1638 TGGTGGCATGCACCCAAACCTGAAGACGGAGGAAATGATACTTCACAGTGTGCGCCCTTC 1697
|||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1698 TGGTGGTATGCACCCAAACCCGAAGACAGAGGAAATGATACTTCACAGTGTGCGCCCTTC 1757
Query 1698 AGAAAATATACTGGTTCTTGTTGGGGACTTTGTGAAGAGCTATTTAACTCTTGTGAAGGA 1757
||||||||| | || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1758 AGAAAATATTCAGGCTCTTGTTGGGGAATTTGTGAAGAGCTATTTAACTCTTGTGAAGGA 1817
Query 1758 TGAATCAGAGAATTTATCAGAAGATAAACTTAAGTTACTCAGCATATCTAAAGGAAAGCT 1817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1818 TGAATCAGAGAATTTATCAGAAGATAAACTTAAGTTACTCAGCATATCTAAAGGAAAGCT 1877
Query 1818 TATTGACTGCATAAGAAAGGCAAATGTCCACAAAACACAGTTGGCGGATGATAAGACTTT 1877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1878 TATTGACTGCATAAGAAAGGCAAATGTCCACAAAACACAGTTGGCGGATGATAAGACTTT 1937
Query 1878 CACGTTTGCATTACTACTAGCAATTAAACAGATGACATGGTATATGTGTTTCTTCGGTAT 1937
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1938 CACGTTTGCATTACTATTAGCAATTAAACAGATGACATGGTATATGTGTTTCTTCGGTAT 1997
Query 1938 CCATGTGGCATATCTCTATCTTAACAAGTTATGTCGAAGCTCAAATCCCATGAAGCTAGG 1997
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1998 CCATGTGGCATATATCTATCTTAACAAGGTATGTCGAAGCTCAAATCCCATGAAGATAGG 2057
Query 1998 ATTGCATACCCTCTACTCAGCAGTTGAAACAGAACACAAATCAGATGAGACAGACGTCAC 2057
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2058 ATTGCACACCCTCTACTCAGCAGTTGAAACAGAACACAAATCAGATGAGACAGACATCAC 2117
Query 2058 AAGATCACATCCATCACTAGCTGTTATCCAGGGGATTTTACAGTCAGAATTTGCCCAGGG 2117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2118 AAGATCACATCCATCACTAGCTGTTATCCAGGGGATTTTACAGTCAGAATTTGCCCGGGG 2177
Query 2118 GAACTCTAAAGCATTACTTTTGGCTGAGAAAGTTTTTTGGTCCTCGCTGAAGAGGCTACT 2177
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2178 GAACTCCAAAGCATTACTTTTGGCTGAGAAAGTGTTTTGGTCCTCGCTGAAGAGGCTACT 2237
Query 2178 GATGTCCATGGGGTTATCTTACAATGAGCTCAACAGTCCCTCCCCAAGTGGAAATCGACC 2237
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2238 GATGTCCATGGGGTTATCTTACAATGACCTCAACAGTCCCTCCCCAAGTGGAAATCGACC 2297
Query 2238 AAATGTTCATGAAGCCATGGGGTTGAATACCATAGAACATGGTTTCCTGCCGATTTCAGA 2297
||||||||||| | | | ||||||||| |||||||||||||||||||||
Sbjct 2298 AAATGTTCATG-A---A-------G----CCATAGAACTTGGTTTCCTGCCGATTTCAGA 2342
Query 2298 CTGCCTAATTATCTCTTACGAGCAAATTTCTCCATCTTTTCCTGTGGAGAATTTCAGCGT 2357
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2343 CTGTCTAATTATCTCTTACGAGCAAATTTCTCCATCTTTTCCTGTGGAGAATTTCAGCGT 2402
Query 2358 CATTGTAGAATATGGAGGTCCAAATGTCTCGCCCAGATTTTCTTTTCCTTCGAAGTTGGA 2417
|||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||
Sbjct 2403 CATTGTAGAATATGGAGGTCCAAATGCCTCGCCCAGATATTCTTTTCCTTCAAAGTTGGA 2462
Query 2418 TTCCTTTCCTGACTTCCATTTCATAAAAGTTGAGATGGATATGTCCAGTGCATGCGGGCA 2477
|||||||||| ||| |||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct 2463 TTCCTTTCCTTCCTTTCATTTCATAAAAGTGGAGCTGGATATGCCCAGTGCATGCGGGCA 2522
Query 2478 ACTGTGTGCAGGTGTTACAGTACCTTATAGTCTCAAAATGATAAAGGGAGATGAAGTTGA 2537
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2523 ACTCTGTGCAGGTGTTACAGTACCTTATAGTCTCAAAATGATAAAGGGAGACGAAGTTGA 2582
Query 2538 GACGAAAACTGGCTGGTTGGAAGAAGTGTTGAACTTTGTTCCACTTGAAAGTGTGTGTTA 2597
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2583 GACGAAAACTGGGTGGTTGGAAGAAGTGTTGAACTTTGTTCCACTTGAAAAAGTGTGTTA 2642
Query 2598 TGCAGTATCTTCAGAAACCACAAATGAATCTGAATACATTTCCATGCCTCAAGAATCTGA 2657
||||| |||||| |||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 2643 TGCAGGATCTTCCGAAACCACAAATGAATCTGAATTTATCTCCATGCCTCAAGAATCTGA 2702
Query 2658 AAGAAAACGTGGGATAATTGAACAAGGAGTTCTCTCTGACCAAAGATCTGTGATTGTTGT 2717
||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 2703 AAGAAAACGTGGGATAATTGAAC-AGG-G-TCTCTCTGACCAAAGATCTGTGATTGTTGT 2759
Query 2718 GAACACAAAAACTGTTGATAAGGAGATGATCATATCCAGAAGAAGTACATACCTGAAGGT 2777
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2760 GAACACAAAAACTGTCGATAAGGAGATGATCATATCCAGAAGAAGTACATACCAGAAGGT 2819
Query 2778 GTTAGCAATGGAAAAAGAAGGAGTGCAAGTTGTGGAGCGCGATTCAGATCTACCTGTGGA 2837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2820 GTTAGCAATGGAAAAAGAAGGAGTGCAAGTTGTGGAGCGCGATTCAGATCTACCTGTGGA 2879
Query 2838 CCTGATGCTAAGTCCTGCAGTTTGCCTACTCTGGTATGATTGTGAAACTGTTAGTAAGAA 2897
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2880 CCTGATGTTAAGTCCTGCAGTTTGCCTACTCTGGTATGATAGTGAAACTGTTAGTAAGAA 2939
Query 2898 GTCGGCTGCAACTATTGGTACTTCCTCAAGCTCACTTTCATGGATTGGAGATATCGCAAC 2957
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2940 GTCGGCTGCAACTATTGGTACTTCCTCAAGTTCACTTTCATGGATTGGAGATATCGCAAC 2999
Query 2958 CAATGTTTTGACGTCATTGAGTTTTAGTTTCAGCACCTGCATTATGGTTTTTGAGGGGGA 3017
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 3000 TAATGTTTTGACGTCATTGAGTTTCAGTTTCAGCACTTGCATTATGGTTTTTGAGGGGGA 3059
Query 3018 ACCCACCTTCCTGGCTACAATAATGGACTCCTCTGATGAACTGTATGCAGCAGCTGGTAG 3077
|||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 3060 ACCCGCCTTCCTGGCTGCCGTAATGGACTCCTCTGATGAACTGTATGCAGCAGCTGGTAG 3119
Query 3078 CCTGGGAATCAGTTTACAGATGTTTTGCTCATCGTCAGCTGATTTCACGGATGAAATTAT 3137
||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 3120 CCTAGGAATCAGTTTACAGATGTTTTGCTCATCGTCAGCTAATCTCACGGATGAAATTAT 3179
Query 3138 ATTGAGGTGTATCAAATCTTCTGTTAAGTTGTCCAAACTCCATGTCAAAATGCCAGAGTC 3197
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3180 ATTGAAGTGTATCAAATCTTCTGTTAAGTTGTCCAAACTCCATGTCAAAATGCCCGAGTC 3239
Query 3198 AGAATCTCTAGCAGAATCATTTTTCACCAAGTTTCCTTCCGTGAATCCACTCACAGCCCA 3257
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 3240 AGAATCTCTAGCAGAATCATTTCTCACCAAGTTTCCTTCCGTGAATCCACTCACAGCTCA 3299
Query 3258 AGTAATTCTGTCATCTTCTGGGTCACTTCTCGAATTCATGAAGCTCCCACATAGTAGCAA 3317
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3300 AGTAATTCTGTCATCTTCTGGGTCACTTCTCGAATTCATGAAGCTCCCACATAAAAGCAA 3359
Query 3318 GGTTGAAAGGATGCAAAAGTATCAGGTACATGAAGAGAGTGTTGAACTATTTAGTTCACT 3377
||||||||||| |||||||||||| |||| ||||||||||||||| ||||| |||||| |
Sbjct 3360 GGTTGAAAGGACGCAAAAGTATCATGTACCTGAAGAGAGTGTTGATCTATTCAGTTCAGT 3419
Query 3378 ATGCAGATACGGAGCGAGGGAGGACTCCAGATCTGTAATGACAGACAGCTCGTCTTCGGT 3437
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3420 ATGCAGATACGGAGCAAGGGAGGACTCCAGATCTGTAATGACAGACAGCTCTTCTTCGGT 3479
Query 3438 ATCTTCTGGACCTGACTCAGACACACACCATGTCAGTGTCCATTCTGGTTGGAGAAAGAA 3497
|||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 3480 ATCTTCTGGACCTGACTCAGACACACACCATGTCAGTGTCCATTCTGGCTCAAAAAAGAA 3539
Query 3498 ACAGTATATTGCTGAGAAAGATGAGATAGATATGGACGACTTGGTCCATTTTGCTCCCTC 3557
|||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 3540 ACAGTACATTGCTGAGAAAGATGAGATAGATATGGACGACTTGGTGCATTTTTCTCCCTC 3599
Query 3558 TACAGAATTTGCTGATGCGCAGCTCAAGTCTTCTGGGGATTTCCAACTTGATGATTCTTG 3617
| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 3600 GATAGAATTTGCTGATACACAGCTCAAGTCTTCTGGGGATTTCCAACTTGATGATTCTTG 3659
Query 3618 GTCATCGAGAGATCATGAGATATTTCGTTTTAACCCTGTCACTGAATTCTCCGATGCACC 3677
|||||||| |||||||||||| |||| |||| ||||||||||||||||||| ||||||||
Sbjct 3660 GTCATCGAAAGATCATGAGATCTTTCATTTTGACCCTGTCACTGAATTCTCAGATGCACC 3719
Query 3678 TTTCAAGCCTTCTGGGATCAGTCATCCCAATGACTCTTGGCCATCTAAAAATCCTGAGAG 3737
|||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 3720 TTTCAAACCTTCTGGGATCAGTCATCCCAATGACTCTTGGCCGTCTAAAGATCCTGAGAG 3779
Query 3738 ATTTGACAAGAAGTCAGGACCTGGTTCATCATCAAAGGACACATTTTGGGAGAAAGATCA 3797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3780 ATTTGACAAGAAGTCAGGACCTGGTTCATCATCAAAGGACACATTTTGGGAGAAAGATCA 3839
Query 3798 GCCTGATTTTTCAGTGGAGGACAGTCTCCCTGGAATTCCTGAATTAGAAGATTGGAGTTT 3857
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3840 GCCTGATTTTTCAGTGGAGGACAGTCTTCCTGGAATTCCTGAATTAGAAGATTGGAGTTT 3899
Query 3858 CCCAGTTAAAGACAAATTCAAGAGCCAGAACAGAGGATGTAAATTTCCGGTGATGGGAGA 3917
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 3900 CCCAGTTAAAGACAAATTCATGAGCCAGAACAGAGGATGTAAATTTCCGGTGATGAGAGA 3959
Query 3918 TTTCGACTTGCATGACAATAGGAACTCAGAGAATTTCATCGCAGACTACAAAGGTGAAGT 3977
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3960 TTTTAACTTGCATGACAATAGGAACTCGGAGAATTTCATCGCAGACTACAAAGGTGAAGT 4019
Query 3978 AATCGACAGAGCTGATAAGTTTCTGGAGGAAGACTTCCCGCCTTCTCCTGTTTATAATAG 4037
||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||
Sbjct 4020 AATTGACAGAGCTGATAAGTATCTCGAGGAAGACTTCCCGCCTTCTCCTGGTTATAATAG 4079
Query 4038 GTTTGCTCCAATAGTTTCTGATGTTGATGAAGAGGAACTTCCAAGAAAATCAAAATCTGC 4097
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 4080 GTTTGCTCGAATAGTTTCTGATGTTAATGAAGAGGAACTTCCAAGAAAATCAAAATCTTC 4139
Query 4098 AAGGAAATTATCTTTCTTTGGGTCTCTCCAGCCTAACTTCCCAAAAACGGCTGACATCGA 4157
|||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 4140 AAGGAAGTTATCTTTCTTTGGATCTCTCCAGCCTAACTTCCCAAAGGCGGCTGACATCGA 4199
Query 4158 CTTGAGTTCTGAAAGATTCGCCTCAGAGAAAGATTCAAA-TAATGATAACAATGCTTCTT 4216
|| |||||||||||||| |||| | |||||||||||||| || ||||||||| ||||||
Sbjct 4200 CTCGAGTTCTGAAAGATACGCCACTGAGAAAGATTCAAAATA-TGATAACAACACTTCTT 4258
Query 4217 TGCGTGGTTATG-TAGATAACTATCCAGCAAAACGCCAAAGGACCCTTTTGGAGGAGGTC 4275
||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4259 TGCGTGGCTATGCT-GATAACTATCCAGCAAAACGCCAAAGGACCCTTTTGGAGGAGGTC 4317
Query 4276 TTAACACGAAGATCTGCAGTTCCAACAACAGAGCTTCCATTTAGAGAAGAGATATCACAT 4335
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 4318 TTAACACGAAGATCTGCAGTTCCAACAACAGAGCTTCCATTTAGAGAAGAAATATCACAT 4377
Query 4336 TTTGGTGGATCTCCACTATCGAACGCAATCCGTTCTTCAAATCAAGTACAAAGTTCTCCT 4395
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 4378 TTTGGTGGATCTCCACTATCAAACGCAATCCGTTCTTCAAATCAAGTACAAAGTTCTCCT 4437
Query 4396 TGGACGGTTGATTTCCTTAACAGAGTTCGAGAAAGAAGCAGGGCAAGGAAACAACATCAA 4455
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 4438 TGGACGGTTGATTTCCTTAACAGAGTTCGAGAAAGAAGCAGAGCAAGGAAACAACAACAA 4497
Query 4456 TCTCTTCCTTCTTATGTCAATC-CCTC-TAGCTTGGAGACTCCAGGGAACATAAAGAAAG 4513
|||||||||||||||| | || || | ||| ||||||||||||||||||||||||||||
Sbjct 4498 TCTCTTCCTTCTTATG-CT-TCTCCACCTAGTTTGGAGACTCCAGGGAACATAAAGAAAG 4555
Query 4514 CTAGTACCAAGAGAAAGAGTCCTTCCATACTAGAGTTTTTCAAGTATAAAGGAGGCaaaa 4573
||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 4556 CTAATACCAAGAGAAAGAGTCCATCCATACTCGAGTTTTTCAAGTATAAAGGAGGCAACA 4615
Query 4574 aatttccagaagagaaaaagcagaagcgttcaaa-aacttcttcagcctcgccaaaaaaC 4632
|| ||| ||||||||| | ||||||||| ||||| || |||||||||||| |||||||||
Sbjct 4616 AACTTCAAGAAGAGAAGAGGCAGAAGCGGTCAAAGAA-TTCTTCAGCCTCACCAAAAAAC 4674
Query 4633 GAGAGATTTTACTCGCCTCTTAAGTCATGGACACCAATTGATAAACGAGCAAAACAGTCT 4692
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 4675 GAGAGATTTTACTCGCCTCTTAAGTCATGCACACCAATTGATAAGCGAGCAAAACAGTCT 4734
Query 4693 CTATCTTACACAGTAAATGGAACTGGAGGCCAAACAAAACTTGTCTGGAAGTAA 4746
||||||||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 4735 CTATCTTACACAGCGAATGGAACTGG---CCAAACAAAACTTGTATGGAAGTAA 4785
Score = 545 bits (295), Expect = 1e-153
Identities = 355/384 (92%), Gaps = 4/384 (1%)
Strand=Plus/Plus
Query 1 ATGCGAACTCGATTTCTCAACATCGATTACTTCTCTACTCCATCTTCTCAGGTATTTGAA 60
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1 ATGCGAACTCGATTTCTCAACATCGATTACTTCTCTACTCCACCTTCTCACGTATTTGAA 60
Query 61 ACCCTAGGCTTCCTCAATCTTCCGGCTCCTGATAATTTTCCGGCACCTATCGTCTACGAC 120
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||
Sbjct 61 ACCCTAGGCTTCCTCAATCTTCCGGCTCCTGATAATTTCCCGGCACCCATCGTCTACAAC 120
Query 121 GGAGAAGAAGACCGTCTCCGATTTGGCTCTG-TCGAAAATGTCT-GTCTCCCGATCGGAA 178
||||||||||||||||||||||||||||| | |||||||||| | || |||| |||||||
Sbjct 121 GGAGAAGAAGACCGTCTCCGATTTGGCTC-GATCGAAAATGT-TAGTATCCCTATCGGAA 178
Query 179 ATTTTCCTATTGAAGCTGCTTTGTCGAAGTTCCTTTCCGACGTGGTTCCCGAACGCGTCA 238
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 179 ATTTGCCTATTGAAGCTGCTTTGTCGAAGTTCCTTTCCGACGTGGTTCCCGACCGCGTCA 238
Query 239 GTGTGGACTATGGAGCTTTTGAAATCGATGATTCTTCCCTCGGAGGTTATTTCTCAGACG 298
||||||||||| ||| |||||||||||| || ||||| ||||||| ||||| ||||||||
Sbjct 239 GTGTGGACTATCGAGTTTTTGAAATCGACGACTCTTCGCTCGGAGTTTATTACTCAGACG 298
Query 299 AGAAGAATGACGGAGATGCCATTGAGGACAAAGCTACATTTAACATTATAGAGTTGGAGA 358
||||| |||||||||||||||||| ||| ||||||||| ||| ||||| ||||||||||
Sbjct 299 AGAAGGATGACGGAGATGCCATTGCGGATAAAGCTACACCTAAAATTATTGAGTTGGAGA 358
Query 359 CTCCGGAGTTGGATTTTGAAATGG 382
|||| |||||||||||||| ||||
Sbjct 359 CTCCAGAGTTGGATTTTGAGATGG 382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 236737804017
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5