BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497373
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58850.1 | Symbols: ATMYB119, MYB119 | myb domain protein 11... 1105 0.0
AT5G11050.1 | Symbols: MYB64, AtMYB64 | myb domain protein 64 |... 483 2e-135
> AT5G58850.1 | Symbols: ATMYB119, MYB119 | myb domain protein
119 | chr5:23763945-23765441 FORWARD LENGTH=1293
Length=1293
Score = 1105 bits (598), Expect = 0.0
Identities = 642/664 (97%), Gaps = 0/664 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGACCGGCGCCTTGTCCATGGAGCTGTGCCGCCGTTGACAGCCGTTGAGAGATTC 60
||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1 ATGGAAGACCGACGCCTTGTCCATGGAGCTGCGCCGCCGTTGACAGCCGTGGAGAGATTC 60
Query 61 TTATACGGTCAAAAGAACGATGTCTTGTGTTCCAAGAAAAAAGAGTGTTCTAGAGACCGA 120
||||||||||||||||| |||| |||||||||||||||| ||||| |||||||||||| |
Sbjct 61 TTATACGGTCAAAAGAATGATGCCTTGTGTTCCAAGAAACAAGAGAGTTCTAGAGACCAA 120
Query 121 CCGATCGTGAAGACGAAAATGTCGATTGAGACTAGAAGCGACAACAAAGAGAACACAACG 180
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGATCGTGAAGACAAAAATATCGATTGAGACTAGAAGCGACAACAAAGAGAACACAACG 180
Query 181 TTTGGGCCGACGAGGGAGAAACATTTGGTCCTTAATGGCGGCAACAGAAGCCCTATTGGA 240
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 181 TTTGGGCCGACGAGGGAGAAACACTTGGTCCTTAATGGCGGCAACAGAAACCCTACTGGA 240
Query 241 GAACTGGTCGCTAGAAGTGCAGCCAGAGATTATCAAAACAGTACGAAGAAACGATCTTAC 300
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 241 GAAGTGGTCGCTAGAAGTGCAGCCAGAGATTATCAAAACAGTACGAAGAAACGATCATCC 300
Query 301 AAGAACCTCATCAAAGGGCAATGGACGGCGGAAGAAGACAGGAAGTTGATAAGGTTGGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGAACCTCATCAAAGGGCAATGGACGGCGGAAGAAGACAGGAAGTTGATAAGGTTGGTG 360
Query 361 AGGCAACATGGGGAGAGGAAATGGGCACTGATATCGGAGAAACTTGAGGGAAGAGCAGGC 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 AGGCAACATGGGGAGAGGAAATGGGCAATGATATCGGAGAAACTTGAGGGAAGAGCAGGC 420
Query 421 AAACAATGTCGTGAGAGATGGCATAATCATCTCCGTCCTAATATTAAGAAAGATGGATGG 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 AAACAATGTCGTGAGAGATGGCATAATCATCTCCGTCCTGATATTAAGAAAGATGGATGG 480
Query 481 AGTGAAGAAGAAGAGAAGGTTCTTGTGGAATCGCACATGAGAATCGGGAACAAATGGGCA 540
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 AGTGAAGAAGAAGAGAGGGTTCTTGTGGAATCACACATGAGAATCGGGAACAAATGGGCA 540
Query 541 GAGATAGCTAAACTCATACCAGGACGGACTGAGAATTCTATCAAGAACCATTGGAATGCG 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGATCGCTAAACTCATACCAGGACGGACTGAGAATTCTATCAAGAACCATTGGAATGCG 600
Query 601 ACCAAGCGACGTCAAAATTCAAAACGCAAACACAAACGCGAATCAAACGCTGATAACAAT 660
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACCAAGAGACGTCAAAATTCAAAACGCAAACACAAACGCGAATCAAACGCTGATAACAAT 660
Query 661 GATA 664
||||
Sbjct 661 GATA 664
Score = 795 bits (430), Expect = 0.0
Identities = 511/551 (93%), Gaps = 2/551 (0%)
Strand=Plus/Plus
Query 696 GGACATTAACAAGAACAATG-ACGAGAACACCATCAGTGTTCTTTCTACACCTAATCTCG 754
||||| | || |||| || | | |||||||||||||||||| |||||||||||||||| |
Sbjct 744 GGACAATGACGAGAAGAA-GAATGAGAACACCATCAGTGTTATTTCTACACCTAATCTTG 802
Query 755 ATCAGATCTATTCTGATGGAGATTCCGCATCGTCCATGCTTGGCGATCCATATGACGAAG 814
||||||||||||||||||| |||||||| |||||||| ||||||| ||||||||||||||
Sbjct 803 ATCAGATCTATTCTGATGGTGATTCCGCGTCGTCCATCCTTGGCGGTCCATATGACGAAG 862
Query 815 AGCTGGTTTACCTTCAAAATATCTTTGCAAACCATCCGATTTCTCTTGAGAATATAGGTT 874
|||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 863 AGCTAGATTACTTTCAAAATATCTTTGCAAACCATCCGATTTCTCTTGAGAATTTAGGTT 922
Query 875 TGAGCCAAACTTCCGATGAGGTAACTCAGTCTTCAGCAACTGGTTTCATGACCAAGAACC 934
||||||||||||| ||||||||||||||||||||| || |||| ||||||| ||||||||
Sbjct 923 TGAGCCAAACTTCGGATGAGGTAACTCAGTCTTCATCATCTGGGTTCATGATCAAGAACC 982
Query 935 CTAAACCTAACTTGCACAACAACGTTGGAACTCATCATCAAGAGGCAGCGATCACAGCTC 994
|||| |||||||||||| ||| ||||||| |||||||||||||||| ||||||||||||
Sbjct 983 CTAACCCTAACTTGCACGACAGTGTTGGAATTCATCATCAAGAGGCAACGATCACAGCTC 1042
Query 995 CGGCGAATACACCCCACCTTGCGTCTGATATATACTTATCTTATTTGTTGAATGGGACGA 1054
||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||
Sbjct 1043 CGGCGAATACACCCCACCTTGCGTCTGATATCTACTTATCTTATTTATTGAACGGTACGA 1102
Query 1055 CGCCGTCCTACTCCGACACTCATTTTCCGTCTTCCTCATCTTCCACGTCATCCACCACCG 1114
|| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 CGTCTTCATACTCCGACACTCATTTTCCGTCTTCCTCATCTTCCACGTCATCCACCACCG 1162
Query 1115 TAGAGCACGGAGGCCGCAACGAGTTTCTTGAGCCTCAAGCTAACTCTACAAGTGAAAGAA 1174
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 TAGAGCATGGAGGCCACAACGAGTTTCTTGAGCCTCAAGCTAACTCTACAAGTGAAAGAA 1222
Query 1175 GAGAAATGGATCTGATAGAGATGCTCTCTGGTTCTATTCAAGGTAGCAATATCTGCTTCC 1234
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1223 GAGAAATGGATCTGATAGAGATGCTCTCTGGTTCTATTCAAGGTAGCAACATCTGCTTCC 1282
Query 1235 CATTGTTCTAG 1245
| ||| |||||
Sbjct 1283 CGTTGGTCTAG 1293
> AT5G11050.1 | Symbols: MYB64, AtMYB64 | myb domain protein 64
| chr5:3502092-3503834 FORWARD LENGTH=1523
Length=1523
Score = 483 bits (261), Expect = 2e-135
Identities = 498/607 (82%), Gaps = 37/607 (6%)
Strand=Plus/Plus
Query 37 CCGTTGACAGCCGTTGAGAGATTCTT-ATACGGTCAAAAGAACGATGTCTTGTG-TTCCA 94
|||||||| || |||||||||||||| | |||| ||||||||||| | |||||| || ||
Sbjct 104 CCGTTGACGGCGGTTGAGAGATTCTTGA-ACGGCCAAAAGAACGAAGCCTTGTGCTT-CA 161
Query 95 AGAAAAAAGAGTGTTCTAGAGACCGACCGATCGTGAAGACGAAAATGTCGATTGAGACTA 154
||||| |||| |||||| ||||||||||||||||||||||| || | ||||||||| ||
Sbjct 162 AGAAACAAGAACGTTCTATAGACCGACCGATCGTGAAGACGACAAGGGCGATTGAGATTA 221
Query 155 GAAGCGACAACAAAGAGAACACAACGTTTGGGCCGACGAGGGAGAAACATTTGGTCCTTA 214
||| || ||||||||||||| | |||||| |||| || ||||||| | | |
Sbjct 222 GAAATGAAAACAAAGAGAACATGATGTTTGGTCCGAGGAAGGAGAAA-A------AC-T- 272
Query 215 ATGGCGGCAACAGAAGCCCTATTGGAGAACTGGTCGCTAGAA-GTGCAGCCAGAGA-T-T 271
| ||| | | |||||||||| | |||| || || ||||||| | ||| | |
Sbjct 273 -T---GGC--C----G--TTATTGGAGAAATCGTCGTTA-AAGGTGCAGCTAAAGATTAT 319
Query 272 A--T-CAA-AACAGT-ACGAAGAAACGATCTTACAAGAACCTCATCAAAGGGCAATGGAC 326
| | ||| | | | || ||||| | | | |||||||| |||||||||||||||||||
Sbjct 320 ACTTGCAAGGATA-TAACAAAGAAGCAACCATACAAGAATATCATCAAAGGGCAATGGAC 378
Query 327 GGCGGAAGAAGACAGGAAGTTGATAAGGTTGGTGAGGCAACATGGGGAGAGGAAATGGGC 386
|| || ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 379 AGCCGATGAAGACAGGAAGTTGATAAAGTTGGTGATGCAACATGGAGAGAGGAAATGGGC 438
Query 387 ACTGATATCGGAGAAACTTGAGGGAAGAGCAGGCAAACAATGTCGTGAGAGATGGCATAA 446
| | || |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 439 AGTAATCTCGGAGAAGCTTGAGGGAAGAGCAGGCAAGCAATGTCGTGAGAGATGGCATAA 498
Query 447 TCATCTCCGTCCTAATATTAAGAAAGATGGATGGAGTGAAGAAGAAGAGA-AGGTTCTTG 505
||||||||||||| |||| ||||||||| | ||||||||||||||||||| | ||||||
Sbjct 499 TCATCTCCGTCCTGATATCAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGAC-TTCTTG 557
Query 506 TGGAATCGCACATGAGAATCGGGAACAAATGGGCAGAGATAGCTAAACTCATACCAGGAC 565
||||| | |||| ||||||||||| || ||||||||||| ||||||||||||| ||| |
Sbjct 558 TGGAAGCACACACCAGAATCGGGAATAAGTGGGCAGAGATCGCTAAACTCATACAAGGGC 617
Query 566 GGACTGAGAATTCTATCAAGAACCATTGGAATGCGACCAAGCGACGTCAAAATTCAAAAC 625
| || || || || ||||||||||||||||||||||| || ||||| ||||| |||||||
Sbjct 618 GAACCGAAAACTCGATCAAGAACCATTGGAATGCGACAAAACGACGCCAAAACTCAAAAC 677
Query 626 GCAAACA 632
|||||||
Sbjct 678 GCAAACA 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5