BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497374
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58860.1 | Symbols: CYP86A1, CYP86 | cytochrome P450, family... 2887 0.0
> AT5G58860.1 | Symbols: CYP86A1, CYP86 | cytochrome P450, family
86, subfamily A, polypeptide 1 | chr5:23765814-23768049 REVERSE
LENGTH=1779
Length=1779
Score = 2887 bits (1563), Expect = 0.0
Identities = 1704/1773 (96%), Gaps = 5/1773 (0%)
Strand=Plus/Plus
Query 1 CTCTCAACAATCTCTCCATACAACAAAAACAAAAAGCCTAAACCGGGAAAATGGAAGCTC 60
|||| ||||||||||||| | ||||||| ||||||||||||||||||| |||||||||||
Sbjct 3 CTCTTAACAATCTCTCCACAGAACAAAAGCAAAAAGCCTAAACCGGGATAATGGAAGCTC 62
Query 61 TAAACCCTATCTTAACCGGCTACGCCGTGGCCGCCCTATCAGTCTACGCTCTTTGGTTCT 120
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 63 TAAACTCTATCTTAACCGGCTACGCCGTGGCAGCCCTATCAGTCTACGCTCTTTGGTTCT 122
Query 121 ACTTCCTGTCCCGAAGACTAACCGGTCCCAAAGTCTTACCGTTCGTAGGAAGCTTACCGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 ACTTCCTGTCCCGAAGACTAACCGGTCCCAAAGTCTTACCGTTCGTAGGAAGCTTACCGT 182
Query 181 ATCTAATCGCAAACCGGAGCCGAATTCACGATTGGATCGCTGATAATCTCCGAGCAACTG 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 ATCTAATCGCTAACCGGAGCCGAATTCACGATTGGATCGCTGATAATCTCCGAGCAACTG 242
Query 241 GTGGTACGTATCAAACATGCACCATGGTGATACCTTTCGTAGCCAAGACGCAAGGGTTTT 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 243 GTGGTACGTATCAAACATGCACCATGGTGATACCTTTCGTAGCCAAGGCGCAAGGGTTTT 302
Query 301 ACACCGTGACGTGTCACCCAAAAAACGTCGAGCATATCCTTAAGACACGGTTTGACAACT 360
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 303 ACACTGTGACGTGTCACCCAAAAAACGTCGAGCATATCCTTAAGACACGGTTCGACAACT 362
Query 361 ATCCGAAAGGTCCGATGTGGCGAGCTGCTTTCCACGACCTGTTAGGACAAGGAATCTTTA 420
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 363 ATCCGAAAGGTCCGATGTGGCGCGCTGCTTTCCACGACCTGTTAGGACAAGGAATCTTCA 422
Query 421 ACAGCGACGGTGACACGTGGCTTATGCAACGTAAGACTGCAGCGCTTGAGTTCACTACTA 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 423 ACAGCGACGGTGACACGTGGCTCATGCAACGTAAGACTGCAGCGCTTGAGTTCACAACTA 482
Query 481 GAACTCTTCGACAAGCCATGGCTCGGTGGGTTAATGGGACTATCAAGAACCGGTTATGGC 540
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 483 GAACTCTTAGACAAGCCATGGCTCGGTGGGTTAACGGGACTATCAAGAACCGGTTATGGC 542
Query 541 TTATATTAGACCGGGCGGTTAAAAACAACAAACCGGTTGATCTTCAAGATTTGTTTTTGA 600
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 543 TTATATTAGACCGTGCGGTTCAAAACAACAAACCGGTTGATCTTCAAGATTTGTTTTTGA 602
Query 601 GGTTAACTTTTGACAACATTTGTGGTCTGACTTTTGGAAAAGACCCGGAGACGCTCTCTC 660
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 603 GGTTAACTTTTGACAACATTTGTGGTCTGACTTTTGGTAAAGACCCGGAGACGCTCTCTC 662
Query 661 TGGACCTACCGGATAATCCTTTCTCTGTCGCTTTTGACACCGCGACAGAGGCTACCT-TA 719
|||| |||||||||||||| |||||||||||||||||||||||||||||||||| || ||
Sbjct 663 TGGATCTACCGGATAATCCCTTCTCTGTCGCTTTTGACACCGCGACAGAGGCTA-CTCTA 721
Query 720 AAGCGACTTCTCTACACCGGTTTCTTGTGGCGAATTCAGAAAGCTATGGGGATTGGATCA 779
||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 722 AAGAGACTTCTCTACACCGGTTTCTTGTGGAGGATTCAGAAAGCTATGGGGATTGGATCA 781
Query 780 GAGGATAAGCTCAAGAAGAGTCTTGAAGTCGTTGAGACTTACATGAACGATGCAATCGAC 839
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GAAGATAAGCTCAAGAAGAGTCTTGAAGTCGTTGAGACTTACATGAACGATGCAATCGAC 841
Query 840 GCTCGGAAAAACTCTCCCTCCGATGATCTTTTGTCGCGCTTCTTGAAGAAACGTGACGTT 899
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 842 GCTCGGAAAAACTCTCCCTCCGATGATCTTTTGTCACGTTTCTTGAAGAAACGTGACGTT 901
Query 900 AACGGTAACGTTCTTCCGACAGATGTTCTTCAGCGCATCGCGCTTAACTTTGTTCTCGCG 959
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 902 AACGGTAACGTTCTTCCAACAGATGTTCTTCAGCGTATCGCGCTTAACTTTGTTCTCGCG 961
Query 960 GGTCGTGACACTTCTTCTGTGGCCTTGAGTTGGTTCTTCTGGCTCGTCATGAATAACCGC 1019
|| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 962 GGCCGTGACACTTCTTCGGTGGCCTTGAGCTGGTTCTTCTGGCTCGTCATGAATAACCGG 1021
Query 1020 GAGGTGGAAACGAAGATCGTTAACGAGTTATCGACGGTTCTGAAGGAGACACGTGGCGAT 1079
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||
Sbjct 1022 GAGGTGGAAACGAAGATCGTTAACGAGTTGTCGATGGTTCTGAAGGAGACACGTGGCAAT 1081
Query 1080 GATCAGGAAAAATGGACGGAGGAGCCGTTAGAGTTCGACGAAGCAGATAGACTCGTTTAC 1139
|||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1082 GATCAGGAGAAATGGACGGAGGAGCCGTTAGAGTTCGACGAGGCAGATAGGCTCGTTTAC 1141
Query 1140 CTCAAAGCTGCTTTGGCTGAAACGCTGCGTTTATATCCTTCTGTGCCTCAGGATTTCAAG 1199
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1142 CTCAAGGCTGCTTTGGCTGAAACGCTGCGTTTATACCCTTCTGTGCCTCAGGATTTCAAA 1201
Query 1200 TACGTCGTAGACGATGACGTTTTGCCTGACGGGACTTTCGTGCCAAGAGGCTCGACGGTG 1259
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1202 TACGTCGTAGACGATGACGTTTTGCCGGACGGGACTTTCGTGCCAAGAGGCTCGACGGTG 1261
Query 1260 ACCTATTCGATTTACTCGATCGGACGTATGAAAACGATTTGGGGAGAAGATTGTCTCGAG 1319
||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1262 ACCTACTCGATTTACTCGATCGGACGTATGAAAACAATTTGGGGCGAAGATTGTCTCGAG 1321
Query 1320 TTCCGTCCAGAGCGGTGGCTCACAGCCGACGGTGAACGGTTCGAGACTCCCAAAGATGGT 1379
|||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1322 TTCCGTCCGGAACGGTGGCTGACAGCCGACGGTGAACGGTTTGAGACTCCCAAAGATGGT 1381
Query 1380 TACAAGTTCGTAGCATTCAACGCCGGACCAAGGACTTGCTTGGGAAAGGACTTGGCTTAC 1439
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 TACAAGTTCGTAGCGTTCAACGCCGGACCAAGGACTTGCTTGGGAAAGGACTTGGCTTAT 1441
Query 1440 CTTCAGATGAAGTCGGTGGCTTCAGCCGTTCTCCTCCGTTACCGGGTATTTCCGGTTCCC 1499
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1442 AATCAGATGAAGTCGGTGGCTTCAGCCGTTCTCCTCCGTTACCGGGTTTTTCCGGTTCCC 1501
Query 1500 GGTCACCGCGTTGAACAAAAGATGTCGCTGACGCTTTTCATGAAGAACGGTTTACGTGTT 1559
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 GGTCACCGCGTTGAGCAAAAGATGTCGCTGACGCTTTTCATGAAGAACGGTTTACGTGTT 1561
Query 1560 TACTTGCAACCTCGTGTTGAGGTGGTTGCATGATTAATTATATTAAGGGTATTATGGTAA 1619
|| ||||||||||||| ||||||| |||||||| | | | |||||||||||||| ||||
Sbjct 1562 TATTTGCAACCTCGTGGTGAGGTGCTTGCATGA-T--TCACATTAAGGGTATTATCGTAA 1618
Query 1620 ATATGTTTGTCATTTCAAGTTTAAATTGTTTTAAGAACAACCTACTTTATTCTATGTTTT 1679
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 ATATGTTTGTCATTTGAAGTTTAAATTGTTTTAAGAACAACCTACTTTATTCTATGTTTT 1678
Query 1680 CTCCACCTACAAAATACTTATTATGATATATATGCACTTTTTGTGCCTTTGTTTGTTTGA 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 CTCCACCTACAAAATACTTATTATGATATATATGCACTTTTTGTGCCTTTGTTTGTTTGA 1738
Query 1740 GTTTGTTCAACTCTTTTTGAATAAAAGTTTATT 1772
|||||||||||||||||||||||||||||||||
Sbjct 1739 GTTTGTTCAACTCTTTTTGAATAAAAGTTTATT 1771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87750552660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5