BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497382
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30910.1 | Symbols: ARPC1A, ARPC1 | actin-related protein C1... 2206 0.0
AT2G31300.1 | Symbols: ARPC1B, ARPC1 | actin-related protein C1... 1930 0.0
> AT2G30910.1 | Symbols: ARPC1A, ARPC1 | actin-related protein
C1A | chr2:13153214-13157107 FORWARD LENGTH=1608
Length=1608
Score = 2206 bits (1194), Expect = 0.0
Identities = 1463/1585 (92%), Gaps = 50/1585 (3%)
Strand=Plus/Plus
Query 1 TGGTCATAAAAATT-GGGCTTTAGAGTaaaaaacaaacaaacaaacaaacaaacaaaaac 59
|||||||||||||| ||||||| ||||||||| ||| ||| ||| ||| ||| || | |
Sbjct 2 TGGTCATAAAAATTGGGGCTTT--AGTAAAAAA-AAA-AAA-AAA-AAA-AAA-AACATC 53
Query 60 -aTCTCTCTC-TTTCAC--TT-C-AC---GTCGTCG---AGCTCCGGATCTCATCGGCGT 107
||||| || ||||| || | || ||||||| | |||||||||||||||||||
Sbjct 54 TGTCTCTTTCACTTCACGTTTGCGACTGTGTCGTCGTCCACCTCCGGATCTCATCGGCGT 113
Query 108 TTCATC---ATTCTCCGTCGATCTATTCACCGTACGACTCCGTTATTAGGAATCTGTAGA 164
|||||| ||| || ||| |||||||||||||||||||||||| |||||||||||| ||
Sbjct 114 TTCATCATAATTATCTGTCCATCTATTCACCGTACGACTCCGTT-TTAGGAATCTGTGGA 172
Query 165 TGTCAATTTGAGAGAAAAGACTATC-T--GT-C-TC-CA-TT---ACAAC----A-CA-T 208
|||||||||||||||||||||| || | | | | || || ||||| | || |
Sbjct 173 TGTCAATTTGAGAGAAAAGACTGTCTTCATTACAACACATTTGGGACAACAAGGATCACT 232
Query 209 TATGGCGGTGGTGGATGTTCATCGGTTCGCTGAGTCAATCACTTGCCATGCGTGGAGTCC 268
||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 233 CATGGCAGTGGTGGATGTTCATCGTTTCGCTGAGTCAATCACTTGCCATGCTTGGAGTCC 292
Query 269 TGATCACTCCATGGTTGCTCTCTGTCCTAACAATACTCAAGTTCATATCTATAAATCATC 328
||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 293 TGATCTCTCCATGGTTGCTCTCTGTCCTAACAACACTGAAGTTCATATCTATAAATCATT 352
Query 329 ATCTCTAGACCAGTGGGAGAGGTTACATGTCCTCCAAAAGCATGACCAAATTGTTTCTGG 388
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 GTCTCAAGACCACTGGGAGAGGTTACATGTCCTCCAAAAGCATGACCAAATTGTTTCTGG 412
Query 389 AATTGACTGGAGCTCAAAATCCAACAAAATCGTCAGTGTTTCTCATGACAGGAACTCGTA 448
||| || ||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 413 AATAGATTGGAGCTCAAAGTCCAACAAAATCGTCACTGTTTCTCATGACAGGAACTCGTA 472
Query 449 CGTGTGGAGCCTGGACGGAGGTGAGTGGGTACCAACTCTTGTTATTCTTAGACTAAATCG 508
||| ||||||||||| |||| ||| |||||||||||||| ||||||||||||||||||||
Sbjct 473 CGTCTGGAGCCTGGAAGGAGCTGAATGGGTACCAACTCTCGTTATTCTTAGACTAAATCG 532
Query 509 TGCTGCACTTTGTGTCCAATGGAGCCCGAAAGAGAACAAGTTCGCTGTTGGAAGTGGTGC 568
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 533 TGCTGCACTTTGTGTCCAATGGAGCCCCAAAGAGAACAAGTTTGCTGTTGGAAGTGGTGC 592
Query 569 TAAAACTGTTTGTATTTGCTATTACGAGCAAGAGAATAACTGGTGGGTCAGTAAACTTAT 628
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 593 TAAAACTGTTTGTATTTGCTATTATGAGCAAGAGAATAACTGGTGGGTCAGTAAGCTAAT 652
Query 629 CCGGAAAAGGCACGAATCTTCAGTCACATCTGTTGCTTGGCATCCTAATAATATTCTTCT 688
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 653 CCGGAAAAGGCACGAATCTTCAGTCACATCTGTTGCTTGGCATCCTAATAATGTTCTTCT 712
Query 689 GGCAACGACATCTACAGATGGAAAATGTCGGGTATTTTCAACATTCATCAAAGGAGTTGA 748
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 713 GGCAACGACATCAACAGATGGAAAATGTCGGGTATTTTCAACATTTATCAAAGGAGTTGA 772
Query 749 TACAAAGGATTCAAAAGCAGGCTCACCAGCGGAAACTAAATTTGGGGAGCAAATTCTTCA 808
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 773 CACAAAGGATTCAAAAGCAGGCTCACCAGCGGAAACGAAATTTGGGGAGCAAATTCTTCA 832
Query 809 GCTTGATCTCTCATATTCTTGGGCATTTGGTGTGAAATGGTCTCCAAGTGGAAACACCTT 868
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 833 GCTTGATCTCTCATATTCTTGGGCATTTGGTGTTAAATGGTCTCCAAGTGGAAACACCTT 892
Query 869 AGCTTATGTAGGCCATAGCTCCATGATTTACTTTGTTGATGATGTTGGTCCTTCTCCTTT 928
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AGCTTATGTAGGTCATAGCTCCATGATTTACTTTGTTGATGATGTTGGTCCTTCTCCTTT 952
Query 929 AGCCCAAAGCGTTGCATTCCGAGATTTGCCTCTTCGTGATGTCCTGTTTATTTCTGAGAA 988
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 953 AGCCCAAAGCGTTGCATTTCGAGATTTGCCTCTTCGTGATGTCCTGTTTATTTCTGAGAA 1012
Query 989 AATGGTGATAGGTGTTGGATATGACAGCAATCCAATGGTATTTG-CTGCAGATGATACTG 1047
|||||||||||| || |||||||||||||| || |||||||||| || ||||||||||||
Sbjct 1013 AATGGTGATAGGCGTGGGATATGACAGCAACCCGATGGTATTTGCCT-CAGATGATACTG 1071
Query 1048 GAATATGGAGCTTTATCAGATACATCGGAGAGAAGAAAGCGGCATCTTCAAATTCCAGTT 1107
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1072 GAATATGGAGCTTTATCAGATACATCGGAGAGAAGAAAGCAGCATCTTCAAATTCCAGTT 1131
Query 1108 ACAGTTCGCAGTTTTCCGAAGCATTTGGAAAATTCTACGGTAGTCAATCAAAGTCTGCAA 1167
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1132 ACAGTTCGCAGTTTTCTGAAGCATTTGGAAAATTCTACGGCAGTCAATCAAAGTCCACAA 1191
Query 1168 CAGCCAATGATGCTTCTGAATCACGTGGACGCGTTCATGATAACTGCATAAATTCTATTG 1227
||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 1192 CAGCCAACGATGCTTCTGAATCACGTGGAGGTGTTCATGATAACTGCATAAATTCCATTG 1251
Query 1228 TGCCTCTGAGCAAAGCAGGGAGTCCTAAAGTTATGCGATTCAGCACTTCAGGATTGGATG 1287
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1252 TGTCTCTGAGCAAAGCAGGGAGTCCTAAAGTAATGCGATTCAGCACTTCAGGATTGGATG 1311
Query 1288 GCAAAGTAGCCATATGGGATCTGGAGAACATGGAACAAGAACTTGGCAATCAGTTTTAAT 1347
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 GCAAAGTTGCCATATGGGATCTGGAGAACATGGAACAAGAACTTGGCAATCAGTTTTAAT 1371
Query 1348 AAACACACAAATAAAACAAATCTGGATCACAAGCAACGTTTTACTTAT-TTTATAACT-C 1405
||||||||||||||||||| ||||| |||||||||| |||||||||| |||| |||| |
Sbjct 1372 AAACACACAAATAAAACAATTCTGGCTCACAAGCAAGGTTTTACTTAAGTTTA-AACTAC 1430
Query 1406 TTTTTCCAATTTCGTATTTGTTTCACTTTGTAAACTACAATAATAAAAGGCCTTATTTTC 1465
|||||| ||||||||| ||||||||||||||||||| | | |||||||||||||||||||
Sbjct 1431 TTTTTC-AATTTCGTAATTGTTTCACTTTGTAAACTGCCACAATAAAAGGCCTTATTTTC 1489
Query 1466 TTGGTTTGTGTAAGGGCAGGTATTATTAATAAGTTTCTTGGCTTCATGATTTGATTCATT 1525
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1490 TTGGTTTGTGTAAGGGCAGGTATTA--A-TAAGTTTCTTGGCTTCATGATTTGATTCATT 1546
Query 1526 TAGTTAGCATCTGGTAATACATTTT 1550
|||||||||||| ||||||| ||||
Sbjct 1547 TAGTTAGCATCTTGTAATACCTTTT 1571
> AT2G31300.1 | Symbols: ARPC1B, ARPC1 | actin-related protein
C1B | chr2:13346122-13349980 REVERSE LENGTH=1521
Length=1521
Score = 1930 bits (1045), Expect = 0.0
Identities = 1324/1452 (91%), Gaps = 46/1452 (3%)
Strand=Plus/Plus
Query 79 CGTCGTCGAGCTCCGGATCTCATCGGCGTTTCATC---ATTCTCCGTCGATCTATTCACC 135
||||||| ||||||||||||||||||||||||||| ||| || ||| |||||||||||
Sbjct 45 CGTCGTCAAGCTCCGGATCTCATCGGCGTTTCATCATAATTATCTGTCCATCTATTCACC 104
Query 136 GTACGACTCCGTTATTAGGAATCTGTAGATGTCAATTTGAGAGAAAAGACTATC-T--GT 192
||||||||||||| |||| |||||||||||||||||||||||||||||||| || | |
Sbjct 105 GTACGACTCCGTT-TTAGAAATCTGTAGATGTCAATTTGAGAGAAAAGACTGTCTTCATT 163
Query 193 -C-TC-CA-TT---ACAAC----A-CA-TTATGGCGGTGGTGGATGTTCATCGGTTCGCT 239
| | || || ||||| | || | ||||| ||||||||||||||||| ||||||
Sbjct 164 ACAACACATTTGGGACAACAAGGATCACTCATGGCAGTGGTGGATGTTCATCGTTTCGCT 223
Query 240 GAGTCAATCACTTGCCATGCGTGGAGTCCTGATCACTCCATGGTTGCTCTCTGTCCTAAC 299
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 224 GAGTCAATCACTTGCCATGCTTGGAGTCCTGATCTCTCCATGGTTGCTCTCTGTCCTAAC 283
Query 300 AATACTCAAGTTCATATCTATAAATCATCATCTCTAGACCAGTGGGAGAGGTTACATGTC 359
|| ||| ||||||||||||||||||||| |||| |||||| ||||||||||||||||||
Sbjct 284 AACACTGAAGTTCATATCTATAAATCATTGTCTCAAGACCACTGGGAGAGGTTACATGTC 343
Query 360 CTCCAAAAGCATGACCAAATTGTTTCTGGAATTGACTGGAGCTCAAAATCCAACAAAATC 419
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 344 CTCCAAAAGCATGACCAAATTGTTTCTGGAATAGATTGGAGCTCAAAGTCCAACAAAATC 403
Query 420 GTCAGTGTTTCTCATGACAGGAACTCGTACGTGTGGAGCCTGGACGGAGGTGAGTGGGTA 479
|||| ||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||
Sbjct 404 GTCACTGTTTCTCATGACAGGAACTCGTACGTCTGGAGCCTGGAAGGAGCTGAATGGGTA 463
Query 480 CCAACTCTTGTTATTCTTAGACTAAATCGTGCTGCACTTTGTGTCCAATGGAGCCCGAAA 539
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 464 CCAACTCTCGTTATTCTTAGACTAAATCGTGCTGCACTTTGTGTCCAATGGAGCCCCAAA 523
Query 540 GAGAACAAGTTCGCTGTTGGAAGTGGTGCTAAAACTGTTTGTATTTGCTATTACGAGCAA 599
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 524 GAGAACAAGTTTGCTGTTGGAAGTGGTGCTAAAACTGTTTGTATTTGCTATTATGAGCAA 583
Query 600 GAGAATAACTGGTGGGTCAGTAAACTTATCCGGAAAAGGCACGAATCTTCAGTCACATCT 659
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 584 GAGAATAACTGGTGGGTCAGTAAGCTAATCCGGAAAAGGCACGAATCTTCAGTCACATCT 643
Query 660 GTTGCTTGGCATCCTAATAATATTCTTCTGGCAACGACATCTACAGATGGAAAATGTCGG 719
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 644 GTTGCTTGGCATCCTAATAATGTTCTTCTGGCAACGACATCAACAGATGGAAAATGTCGG 703
Query 720 GTATTTTCAACATTCATCAAAGGAGTTGATACAAAGGATTCAAAAGCAGGCTCACCAGCG 779
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 704 GTATTTTCAACATTCATCAAAGGAGTTGACACAAAGGATTCAAAAGCAGGCTCACCAGCG 763
Query 780 GAAACTAAATTTGGGGAGCAAATTCTTCAGCTTGATCTCTCATATTCTTGGGCATTTGGT 839
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 GAAACGAAATTTGGGGAGCAAATTCTTCAGCTTGATCTCTCATATTCTTGGGCATTTGGT 823
Query 840 GTGAAATGGTCTCCAAGTGGAAACACCTTAGCTTATGTAGGCCATAGCTCCATGATTTAC 899
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 824 GTTAAATGGTCTCCAAGTGGAAACACCTTAGCATATGTAGGTCATAGCTCCATGATTTAC 883
Query 900 TTTGTTGATGATGTTGGTCCTTCTCCTTTAGCCCAAAGCGTTGCATTCCGAGATTTGCCT 959
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 TTTGTTGATGATGTTGGCCCTTCTCCTTTAGCCCAAAGCGTTGCATTCCGAGATTTGCCT 943
Query 960 CTTCGTGATGTCCTGTTTATTTCTGAGAAAATGGTGATAGGTGTTGGATATGACAGCAAT 1019
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 944 CTTCGTGATGTCCTGTTTATTTCTGAGAAAATGGTGATAGGGGTTGGATATGACAGCAAC 1003
Query 1020 CCAATGGTATTTGCTGCAGATGATACTGGAATATGGAGCTTTATCAGATACATCGGAGAG 1079
|| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 1004 CCGATGGTATTTGCTGCAGATGATACTGGAATATGGAGCTTCATAAGATACATTGGAGAG 1063
Query 1080 AAGAAAGCGGCATCTTCAAATTCCAGTTACAGTTCGCAGTTTTCCGAAGCATTTGGAAAA 1139
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1064 AAGAAAGCGGCATCTTCAGGTTCCAGTTACAGTTCGCAGTTTTCCGAAGCGTTTGGAAAA 1123
Query 1140 TTCTACGGTAGTCAATCAAAGTCTGCAACAGCCAATGATGCTTCTGAATCACGTGGACGC 1199
|||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||
Sbjct 1124 TTCTACGGTAGTCAATCAAAGTCTACAACAGCCAACGATGCTTCTGATTCACGTGGAGGC 1183
Query 1200 GTTCATGATAACTGCATAAATTCTATTGTGCCTCTGAGCAAAGCAGGGAGTCCTAAAGTT 1259
|||||||||||| |||||| ||| |||||||||||| |||||| ||||||||||||||||
Sbjct 1184 GTTCATGATAACAGCATAACTTCCATTGTGCCTCTGGGCAAAGGAGGGAGTCCTAAAGTT 1243
Query 1260 ATGCGATTCAGCACTTCAGGATTGGATGGCAAAGTAGCCATATGGGATCTGGAGAACATG 1319
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1244 ATGCGATTCAGCACTTCAGGATTGGATGGCAAAATAGCCATATGGGATCTAGAGAACATG 1303
Query 1320 GAACAAGAACTTGGCAATCAGTTTTAATAAACA-C---A-CAA-A-TAAA---ACA-AAT 1368
|||||||||||||||||||||||||||||| | | | || | | | || |||
Sbjct 1304 CAACAAGAACTTGGCAATCAGTTTTAATAAA-ATCTGGATCAGTAGTCAGCTTACTTAAT 1362
Query 1369 CTGGATCA-CAAGCAACGT-TTT--ACTTAT--TTTATAACTCTTTTTCCAATTTCGTAT 1422
|| || | || | | | ||| ||| | ||| | || |||||||||||||||||
Sbjct 1363 TTGTAT-ATCA-G-ATTTTGTTTCGACT-AGCCTTT-TCAC-CTTTTTCCAATTTCGTAA 1416
Query 1423 TTGTTTCACTTTGTAAACTACAATAATAAAAGGCCTTATTTTCTTGGTTTGTGTAAGGGC 1482
|||| ||||| ||||||| || ||||||| |||| | ||||| ||||||||||||||||
Sbjct 1417 TTGTCACACTTGGTAAACTGCA-TAATAAA-GGCCATGTTTTCCTGGTTTGTGTAAGGGC 1474
Query 1483 AGGTATTATTAA 1494
|||| |||||||
Sbjct 1475 AGGTGTTATTAA 1486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77710443660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5