BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497387
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14040.1 | Symbols: | Pectin lyase-like superfamily protein... 2307 0.0
AT3G07850.1 | Symbols: | Pectin lyase-like superfamily protein... 2250 0.0
> AT3G14040.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:4648348-4650319 REVERSE LENGTH=1690
Length=1690
Score = 2307 bits (1249), Expect = 0.0
Identities = 1457/1553 (94%), Gaps = 31/1553 (2%)
Strand=Plus/Plus
Query 1 CATCAATaaacacaaaaac--aa-aagaagagaataaacaaaa-aa-aaaaataaaa-ta 54
||||||||||||||||||| || ||||||||||||||||||| || ||||| |||| ||
Sbjct 3 CATCAATAAACACAAAAACAAAAGAAGAAGAGAATAAACAAAAGAAGAAAAA-AAAAGTA 61
Query 55 --aaaacaaaatcaataaaaggagaataagaaaatGGTGGGTTTTCGCAGAGCAAGCGGA 112
|||||||||||||||||| |||||||| ||||||||||||| || || ||||||||||
Sbjct 62 TTAAAACAAAATCAATAAAAAGAGAATAA-AAAATGGTGGGTTCTCACAAAGCAAGCGGA 120
Query 113 GTGCTTCTTGTGGTATTAGTGGTTATGGCCACCACAATAGTAAACGGGACACCGGTTGTC 172
|||||||||||| || |||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 121 GTGCTTCTTGTGCTACTAGTGGTTATGGCCACCACAATAGCAAACGGGACACCTGTTGTC 180
Query 173 GATAAAGCAAAAGATGCAGCAGA-ATCAGTTGGTGATAAAGTCAGTGAA-GCAGCTACAA 230
|||| ||||||| ||||||| | | |||||| |||| || || || |||||||||
Sbjct 181 GATACAGCAAAAAATGCAGC-TACAGCAGTTGAAGATACAG-CAAAAAATGCAGCTACAG 238
Query 231 CAGTTGGCGATGCAGCTGCATCAGTTGGTGTTAAAGTACCAGGAGCCAAAGCAGGCGGTG 290
||||||||| |||||||||||||||||||| ||||||| |||| |||||| |||||||||
Sbjct 239 CAGTTGGCGGTGCAGCTGCATCAGTTGGTGCTAAAGTAACAGGTGCCAAACCAGGCGGTG 298
Query 291 CATCACTTGATGTTAAAGCATCCGGAGCTAAAGGAGATGGCAAAACTGATGACAGTGCGG 350
|||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||
Sbjct 299 CATCACTTGATGTTAAAGCATCAGGAGCCAAAGGAGACGGCAAAACTGATGATAGTGCGG 358
Query 351 CATTTGCGGCTGCATGGAAAGAAGCTTGTGCAGCAGGGAGCACGATTACAGTGCCCAAAG 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 CATTTGCGGCTGCATGGAAAGAAGCTTGTGCAGCAGGGAGCACGATTACAGTGCCAAAAG 418
Query 411 GTGAGTATTTGGTAGAGAGCCTAGAGTTCAAAGGTCCATGCAAAGGTCCAGTCACTTTGG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTGAGTATTTGGTAGAGAGCCTAGAGTTCAAAGGTCCATGCAAAGGTCCAGTCACTTTGG 478
Query 471 AATTGAATGGCAATCTTAAGGCTCCGGCTACGGTCAAGACCTCTAAACCTCATTCCGGAT 530
|||||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||
Sbjct 479 AATTGAATGGCAATTTTAAGGCTCCGGCTACGGTCAAGACCACTAAGCCTCATGCCGGAT 538
Query 531 GGATTGATTTCGAAAA-CATCGCTGATTTCACTTTGAATGGAAACGGAGCCATTTTTGAC 589
|||||||||||||||| | |||||||||||||||||||||||||| ||| |||||||||
Sbjct 539 GGATTGATTTCGAAAATC-TCGCTGATTTCACTTTGAATGGAAACAAAGCTATTTTTGAC 597
Query 590 GGTCAAGGTTCCCTCGCTTGGAAGGCCAATGACTGCGCCAAAACCGGCAAATGCAACTCT 649
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GGTCAAGGGTCCCTCGCTTGGAAGGCCAATGACTGCGCCAAAACCGGCAAATGCAACTCT 657
Query 650 CTCCCCATCAACATCCGATTCACGGGTCTAACAAACTCGAAA-ATTAAGAGTATTACATC 708
||||| ||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||
Sbjct 658 CTCCCTATCAACATCCGATTCACTGGTCTAACAAACTC-AAAGATTAACAGTATTACATC 716
Query 709 AACAAACAGCAAACTTTTCCACATGAACATCCTTAACTGCAAAAACATAACTCTTGA-GG 767
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 717 AACAAACAGCAAGCTTTTCCACATGAACATCCTTAACTGCAAGAACATAACTCTT-ACGG 775
Query 768 ATATTGGTATTGATGCACCTCCGGAGAGTCTCAACACCGATGGGATCCACATCGGAAGGT 827
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 776 ATATCGGTATTGATGCACCTCCGGAGAGTCTCAACACCGATGGTATCCACATCGGAAGGT 835
Query 828 CCAATGGCGTCAACTT-ATTAGGGGCAAAGATTAAAACCGGAGATGACTGCGTTTCCATT 886
||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 836 CCAATGGAGTCAACTTAATT-GGGGCAAAGATTAAAACCGGAGATGACTGCGTTTCCATT 894
Query 887 GGAGATGGTACCGAAAATCTCATTGTTGAGAACGTAGAATGTGGACCGGGACACGGAATT 946
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 895 GGAGATGGTACCGAAAATCTCATTGTTGAGAACGTAGAATGTGGACCAGGACACGGAATT 954
Query 947 TCCATTGGAAGTCTCGGAAGATACCCTAATGAGCAACCAGTAAAAGGAGTCACTGTGAGG 1006
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 955 TCCATTGGAAGTCTTGGAAGATACCCTAATGAACAACCAGTAAAAGGAGTCACCGTGAGG 1014
Query 1007 AAATGCCTCATCAAGAACACTGACAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCC 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AAATGCCTCATCAAGAACACTGACAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCC 1074
Query 1067 CCCGGTATCGCCTCCAACATTCTTTTCGAAGATATCACAATGGACAATGTTAGCACC-CC 1125
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1075 CCCGGTATCGCCTCCAACATTCTTTTCGAAGATATCACAATGGACAATGTTAGC-CTTCC 1133
Query 1126 CGTTCTCATCGACCAAGAGTACTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGAA 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CGTTCTCATCGACCAAGAGTACTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGAA 1193
Query 1186 AGTGAAGTTGTCGGACGTGACTATCAAGAACATTAAGGGTACATCAGCAACAAAGGTGGC 1245
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1194 AGTGAAGTTGTCAGACGTGACTATCAAGAACATTAAGGGAACATCAGCAACAAAGGTAGC 1253
Query 1246 TGTGAAGCTAATGTGCAGTAAAGGCGTTCCTTGCACCAATATTGCTCTCGCTGACATCAA 1305
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1254 AGTGAAGCTAATGTGCAGCAAAGGCGTTCCTTGCACCAATATTGCTCTCTCTGACATCAA 1313
Query 1306 CTTGGTCCACAACGGCAAAGAGGGACCAGCTGTCTCGGCATGTTCTAACATCAAGCCTAT 1365
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1314 CTTGGTCCACAACGGCAAAGAGGGACCAGCTGTCTCAGCATGTTCTAACATCAAGCCTAT 1373
Query 1366 TCTCTCCGGAAAGTTGGTTCCAGCGGCTTGCACTGAAGTCGCTAAAACGGGTCCTTAAAT 1425
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1374 TCTCAGCGGAAAGTTGGTTCCAGCGGCTTGCACTGAAGTCGCTAAACCGGGTCCTTAAAT 1433
Query 1426 TAAAGGCGCATATATGTCCACCATAAATCCATCCAATCTGGTGAAGACGCTTTGATTAGG 1485
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 TAAAGTTGCAT----GTCCACCATAAATCCATCCAATCTGGTGAAGACGCTTTGATTAGG 1489
Query 1486 GTGCGATGATAAAGTTTTGCAATAttttttt-GACATAAAAATTATATGAATA 1537
||||||||| ||| ||||||||||||||||| || ||| ||||||||| ||||
Sbjct 1490 GTGCGATGAAAAA-TTTTGCAATATTTTTTTTGAGATATAAATTATAT-AATA 1540
> AT3G07850.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:2505547-2507528 REVERSE LENGTH=1691
Length=1691
Score = 2250 bits (1218), Expect = 0.0
Identities = 1446/1553 (93%), Gaps = 28/1553 (2%)
Strand=Plus/Plus
Query 1 CATCAATaaacacaaaaac--aa-aagaagagaataaacaaaa-aa-aaaaataaaat-a 54
||||||||||||||||||| || ||||||||||||||||||| || ||||| ||| | |
Sbjct 1 CATCAATAAACACAAAAACAAAAGAAGAAGAGAATAAACAAAAGAAGAAAAA-AAACTAA 59
Query 55 -aaaacaaaatcaataaaaggagaataagaaaatGGTGGGTTTTCGCAGAGCAAGCGGAG 113
|||||||||||||||||| |||||||| ||||||||||||| || || |||||||||||
Sbjct 60 TAAAACAAAATCAATAAAAAGAGAATAA-AAAATGGTGGGTTCTCACAAAGCAAGCGGAG 118
Query 114 TGCTTCTTGTGGTATTAGTGGTTATGGCCACCACAATAGTAAACGGGACACCGGTTGTCG 173
||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 119 TGCTTCTTGTGCTACTAGTGGTTATGGCCACCACAATAGCAAACGGGACACCGGTTGTCG 178
Query 174 ATAAAGCAAAAGATGCAGCAGA-ATCAGTTGGTGATAAAGTCAGTGAA-GCAGCTACAAC 231
||||||||||| ||||||| | | |||||| |||| || || || ||||||||| |
Sbjct 179 ATAAAGCAAAAAATGCAGC-TACAGCAGTTGAAGATACAG-CAAAAAATGCAGCTACAGC 236
Query 232 AGTTGGCGATGCAGCTGCATCAGTTGGTGTTAAAGTACCAGGAGCCAAAGCAGGCGGTGC 291
|||||||| |||||||||||||||||||| ||||||| |||| |||||| ||||| ||
Sbjct 237 AGTTGGCGGTGCAGCTGCATCAGTTGGTGCTAAAGTATCAGGTGCCAAACCAGGC---GC 293
Query 292 ATCACTTGATGTTAAAGCATCCGGAGCTAAAGGAGATGGCAAAACTGATGACAGTGCGGC 351
| || |||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||
Sbjct 294 AGCAGTTGATGTTAAAGCATCAGGAGCCAAAGGAGACAGCAAAACTGATGATAGTGCGGC 353
Query 352 ATTTGCGGCTGCATGGAAAGAAGCTTGTGCAGCAGGGAGCACGATTACAGTGCCCAAAGG 411
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 354 ATTTGCGGCTGCATGGAAAGAAGCTTGTGCAGCAGGGAGCACAATTACAGTGCCAAAAGG 413
Query 412 TGAGTATTTGGTAGAGAGCCTAGAGTTCAAAGGTCCATGCAAAGGTCCAGTCACTTTGGA 471
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TGAGTATATGGTAGAGAGCCTAGAGTTCAAAGGTCCATGCAAAGGTCCAGTCACTTTGGA 473
Query 472 ATTGAATGGCAATCTT-AAGGCTCCGGCTACGGTCAAGACCTCTAAACCTCATTCCGGAT 530
||||||||||||| || |||||||||||||||||||||||| |||| || ||| ||||||
Sbjct 474 ATTGAATGGCAAT-TTCAAGGCTCCGGCTACGGTCAAGACCACTAAGCCACATGCCGGAT 532
Query 531 GGATTGATTTCGAAAACATCGCTGATTTCACTTTGAATGGAAACGGAGCCATTTTTGACG 590
|||||||||||||||| || |||||||||||||||||||||||| ||| ||||||||||
Sbjct 533 GGATTGATTTCGAAAATATAGCTGATTTCACTTTGAATGGAAACAAAGCTATTTTTGACG 592
Query 591 GTCAAGGTTCCCTCGCTTGGAAGGCCAATGACTGCGCCAAAACCGGCAAATGCAACTCTC 650
||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 593 GTCAAGGGTCCCTCGCTTGGAAGGCCAATGATTGTGCCAAAACTGGCAAATGCAACTCTC 652
Query 651 TCCCCATCAACATCCGATTCACGGGTCTAACAAACTCGAAA-ATTAAGAGTATTACATCA 709
|||| ||||||||||||||||| |||||||||||||| ||| ||||| ||||||||||||
Sbjct 653 TCCCTATCAACATCCGATTCACTGGTCTAACAAACTC-AAAGATTAATAGTATTACATCA 711
Query 710 ACAAACAGCAAACTTTTCCACATGAACATCCTTAACTGCAAAAACATAACTCTTGAGGAT 769
||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||
Sbjct 712 ACAAACAGCAAACTTTTCCACATGAACATCCTTAACTGCAAGAACATTACTCTTTCGGAT 771
Query 770 ATTGGTATTGATGCACCTCCGGAGAGTCTCAACACCGATGGGATCCACATCGGAAGGTCC 829
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 772 ATTGGTATTGATGCACCTCCGGAGAGTCTCAACACCGATGGTATCCACATCGGAAGGTCC 831
Query 830 AATGGCGTCAACTT-ATTAGGGGCAAAGATTAAAACCGGAGATGACTGCGTTTCCATTGG 888
||||| |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 832 AATGGAGTCAACTTAATT-GGGGCAAAGATCAAAACCGGAGATGACTGCGTTTCCATTGG 890
Query 889 AGATGGTACCGAAAATCTCATTGTTGAGAACGTAGAATGTGGACCGGGACACGGAATTTC 948
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 891 AGATGGTACCGAAAATCTCATTGTTGAGAACGTAGAATGTGGACCAGGACACGGAATTTC 950
Query 949 CATTGGAAGTCTCGGAAGATACCCTAATGAGCAACCAGTAAAAGGAGTCACTGTGAGGAA 1008
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 951 CATTGGAAGTCTTGGAAGATACCCTAATGAGCAACCAGTAAAAGGAGTCACCGTGAGGAA 1010
Query 1009 ATGCCTCATCAAGAACACTGACAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCCCC 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 ATGCCTCATCAAGAACACTGACAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCCCC 1070
Query 1069 CGGTATCGCCTCCAACATTCTTTTCGAAGATATCACAATGGACAATGTTAGCAC-CCCCG 1127
||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1071 CGGCATCGCCTCCAACATTCTTTTCGAAGATATCACAATGGACAATGTTAGC-CTTCCCG 1129
Query 1128 TTCTCATCGACCAAGAGTACTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGAAAG 1187
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1130 TTCTCATCGACCAAGAGTACTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGCAAG 1189
Query 1188 TGAAGTTGTCGGACGTGACTATCAAGAACATTAAGGGTACATCAGCAACAAAGGTGGCTG 1247
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1190 TGAAGTTGTCAGACGTGACTATCAAGGGCATTAAGGGTACATCAGCAACAAAGGTGGCTG 1249
Query 1248 TGAAGCTAATGTGCAGTAAAGGCGTTCCTTGCACCAATATTGCTCTCGCTGACATCAACT 1307
|||||||||||||||| ||||| || ||||||||||||||||||||| ||||||||||||
Sbjct 1250 TGAAGCTAATGTGCAGCAAAGGAGTGCCTTGCACCAATATTGCTCTCTCTGACATCAACT 1309
Query 1308 TGGTCCACAACGGCAAAGAGGGACCAGCTGTCTCGGCATGTTCTAACATCAAGCCTATTC 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TGGTCCACAACGGCAAAGAGGGACCAGCTGTCTCGGCATGTTCTAACATCAAGCCTATTC 1369
Query 1368 TCTCCGGAAAGTTGGTTCCAGCGGCTTGCACTGAAGTCGCTAAAACGGGTCCTTAAATTA 1427
|| ||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||
Sbjct 1370 TCAGCGGAAAGTTGGTTCCAGCGGCTTGCACTGAAGTTGCTAAACCGGGTCCATAAATTA 1429
Query 1428 AAGGCGCATATATGTCCACCATAAATCCATCCAATCTGGTGAAGACGCTTTGATTAGGGT 1487
||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 AAGTCGC-T-T--GTCCACCATAAATCCATCCAATCTGGTGAAGACGCTTTGATTAGGGT 1485
Query 1488 GCGATGATAAAGTTTTGCAATAtttttttGACATAAAAATTATATGAATATTT 1540
||||||| ||| ||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1486 GCGATGAAAAAATTTTGCAATATTTTTTTGACATATAAATTATATGGATATTT 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5