BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg497387 Length=1551 Score E Sequences producing significant alignments: (Bits) Value AT3G14040.1 | Symbols: | Pectin lyase-like superfamily protein... 2307 0.0 AT3G07850.1 | Symbols: | Pectin lyase-like superfamily protein... 2250 0.0 > AT3G14040.1 | Symbols: | Pectin lyase-like superfamily protein | chr3:4648348-4650319 REVERSE LENGTH=1690 Length=1690 Score = 2307 bits (1249), Expect = 0.0 Identities = 1457/1553 (94%), Gaps = 31/1553 (2%) Strand=Plus/Plus Query 1 CATCAATaaacacaaaaac--aa-aagaagagaataaacaaaa-aa-aaaaataaaa-ta 54 ||||||||||||||||||| || ||||||||||||||||||| || ||||| |||| || Sbjct 3 CATCAATAAACACAAAAACAAAAGAAGAAGAGAATAAACAAAAGAAGAAAAA-AAAAGTA 61 Query 55 --aaaacaaaatcaataaaaggagaataagaaaatGGTGGGTTTTCGCAGAGCAAGCGGA 112 |||||||||||||||||| |||||||| ||||||||||||| || || |||||||||| Sbjct 62 TTAAAACAAAATCAATAAAAAGAGAATAA-AAAATGGTGGGTTCTCACAAAGCAAGCGGA 120 Query 113 GTGCTTCTTGTGGTATTAGTGGTTATGGCCACCACAATAGTAAACGGGACACCGGTTGTC 172 |||||||||||| || |||||||||||||||||||||||| |||||||||||| |||||| Sbjct 121 GTGCTTCTTGTGCTACTAGTGGTTATGGCCACCACAATAGCAAACGGGACACCTGTTGTC 180 Query 173 GATAAAGCAAAAGATGCAGCAGA-ATCAGTTGGTGATAAAGTCAGTGAA-GCAGCTACAA 230 |||| ||||||| ||||||| | | |||||| |||| || || || ||||||||| Sbjct 181 GATACAGCAAAAAATGCAGC-TACAGCAGTTGAAGATACAG-CAAAAAATGCAGCTACAG 238 Query 231 CAGTTGGCGATGCAGCTGCATCAGTTGGTGTTAAAGTACCAGGAGCCAAAGCAGGCGGTG 290 ||||||||| |||||||||||||||||||| ||||||| |||| |||||| ||||||||| Sbjct 239 CAGTTGGCGGTGCAGCTGCATCAGTTGGTGCTAAAGTAACAGGTGCCAAACCAGGCGGTG 298 Query 291 CATCACTTGATGTTAAAGCATCCGGAGCTAAAGGAGATGGCAAAACTGATGACAGTGCGG 350 |||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||||| Sbjct 299 CATCACTTGATGTTAAAGCATCAGGAGCCAAAGGAGACGGCAAAACTGATGATAGTGCGG 358 Query 351 CATTTGCGGCTGCATGGAAAGAAGCTTGTGCAGCAGGGAGCACGATTACAGTGCCCAAAG 410 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 359 CATTTGCGGCTGCATGGAAAGAAGCTTGTGCAGCAGGGAGCACGATTACAGTGCCAAAAG 418 Query 411 GTGAGTATTTGGTAGAGAGCCTAGAGTTCAAAGGTCCATGCAAAGGTCCAGTCACTTTGG 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 GTGAGTATTTGGTAGAGAGCCTAGAGTTCAAAGGTCCATGCAAAGGTCCAGTCACTTTGG 478 Query 471 AATTGAATGGCAATCTTAAGGCTCCGGCTACGGTCAAGACCTCTAAACCTCATTCCGGAT 530 |||||||||||||| |||||||||||||||||||||||||| |||| |||||| |||||| Sbjct 479 AATTGAATGGCAATTTTAAGGCTCCGGCTACGGTCAAGACCACTAAGCCTCATGCCGGAT 538 Query 531 GGATTGATTTCGAAAA-CATCGCTGATTTCACTTTGAATGGAAACGGAGCCATTTTTGAC 589 |||||||||||||||| | |||||||||||||||||||||||||| ||| ||||||||| Sbjct 539 GGATTGATTTCGAAAATC-TCGCTGATTTCACTTTGAATGGAAACAAAGCTATTTTTGAC 597 Query 590 GGTCAAGGTTCCCTCGCTTGGAAGGCCAATGACTGCGCCAAAACCGGCAAATGCAACTCT 649 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 GGTCAAGGGTCCCTCGCTTGGAAGGCCAATGACTGCGCCAAAACCGGCAAATGCAACTCT 657 Query 650 CTCCCCATCAACATCCGATTCACGGGTCTAACAAACTCGAAA-ATTAAGAGTATTACATC 708 ||||| ||||||||||||||||| |||||||||||||| ||| ||||| ||||||||||| Sbjct 658 CTCCCTATCAACATCCGATTCACTGGTCTAACAAACTC-AAAGATTAACAGTATTACATC 716 Query 709 AACAAACAGCAAACTTTTCCACATGAACATCCTTAACTGCAAAAACATAACTCTTGA-GG 767 |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | || Sbjct 717 AACAAACAGCAAGCTTTTCCACATGAACATCCTTAACTGCAAGAACATAACTCTT-ACGG 775 Query 768 ATATTGGTATTGATGCACCTCCGGAGAGTCTCAACACCGATGGGATCCACATCGGAAGGT 827 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 776 ATATCGGTATTGATGCACCTCCGGAGAGTCTCAACACCGATGGTATCCACATCGGAAGGT 835 Query 828 CCAATGGCGTCAACTT-ATTAGGGGCAAAGATTAAAACCGGAGATGACTGCGTTTCCATT 886 ||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 836 CCAATGGAGTCAACTTAATT-GGGGCAAAGATTAAAACCGGAGATGACTGCGTTTCCATT 894 Query 887 GGAGATGGTACCGAAAATCTCATTGTTGAGAACGTAGAATGTGGACCGGGACACGGAATT 946 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 895 GGAGATGGTACCGAAAATCTCATTGTTGAGAACGTAGAATGTGGACCAGGACACGGAATT 954 Query 947 TCCATTGGAAGTCTCGGAAGATACCCTAATGAGCAACCAGTAAAAGGAGTCACTGTGAGG 1006 |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 955 TCCATTGGAAGTCTTGGAAGATACCCTAATGAACAACCAGTAAAAGGAGTCACCGTGAGG 1014 Query 1007 AAATGCCTCATCAAGAACACTGACAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCC 1066 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1015 AAATGCCTCATCAAGAACACTGACAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCC 1074 Query 1067 CCCGGTATCGCCTCCAACATTCTTTTCGAAGATATCACAATGGACAATGTTAGCACC-CC 1125 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 1075 CCCGGTATCGCCTCCAACATTCTTTTCGAAGATATCACAATGGACAATGTTAGC-CTTCC 1133 Query 1126 CGTTCTCATCGACCAAGAGTACTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGAA 1185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1134 CGTTCTCATCGACCAAGAGTACTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGAA 1193 Query 1186 AGTGAAGTTGTCGGACGTGACTATCAAGAACATTAAGGGTACATCAGCAACAAAGGTGGC 1245 |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 1194 AGTGAAGTTGTCAGACGTGACTATCAAGAACATTAAGGGAACATCAGCAACAAAGGTAGC 1253 Query 1246 TGTGAAGCTAATGTGCAGTAAAGGCGTTCCTTGCACCAATATTGCTCTCGCTGACATCAA 1305 ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 1254 AGTGAAGCTAATGTGCAGCAAAGGCGTTCCTTGCACCAATATTGCTCTCTCTGACATCAA 1313 Query 1306 CTTGGTCCACAACGGCAAAGAGGGACCAGCTGTCTCGGCATGTTCTAACATCAAGCCTAT 1365 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1314 CTTGGTCCACAACGGCAAAGAGGGACCAGCTGTCTCAGCATGTTCTAACATCAAGCCTAT 1373 Query 1366 TCTCTCCGGAAAGTTGGTTCCAGCGGCTTGCACTGAAGTCGCTAAAACGGGTCCTTAAAT 1425 |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1374 TCTCAGCGGAAAGTTGGTTCCAGCGGCTTGCACTGAAGTCGCTAAACCGGGTCCTTAAAT 1433 Query 1426 TAAAGGCGCATATATGTCCACCATAAATCCATCCAATCTGGTGAAGACGCTTTGATTAGG 1485 ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1434 TAAAGTTGCAT----GTCCACCATAAATCCATCCAATCTGGTGAAGACGCTTTGATTAGG 1489 Query 1486 GTGCGATGATAAAGTTTTGCAATAttttttt-GACATAAAAATTATATGAATA 1537 ||||||||| ||| ||||||||||||||||| || ||| ||||||||| |||| Sbjct 1490 GTGCGATGAAAAA-TTTTGCAATATTTTTTTTGAGATATAAATTATAT-AATA 1540 > AT3G07850.1 | Symbols: | Pectin lyase-like superfamily protein | chr3:2505547-2507528 REVERSE LENGTH=1691 Length=1691 Score = 2250 bits (1218), Expect = 0.0 Identities = 1446/1553 (93%), Gaps = 28/1553 (2%) Strand=Plus/Plus Query 1 CATCAATaaacacaaaaac--aa-aagaagagaataaacaaaa-aa-aaaaataaaat-a 54 ||||||||||||||||||| || ||||||||||||||||||| || ||||| ||| | | Sbjct 1 CATCAATAAACACAAAAACAAAAGAAGAAGAGAATAAACAAAAGAAGAAAAA-AAACTAA 59 Query 55 -aaaacaaaatcaataaaaggagaataagaaaatGGTGGGTTTTCGCAGAGCAAGCGGAG 113 |||||||||||||||||| |||||||| ||||||||||||| || || ||||||||||| Sbjct 60 TAAAACAAAATCAATAAAAAGAGAATAA-AAAATGGTGGGTTCTCACAAAGCAAGCGGAG 118 Query 114 TGCTTCTTGTGGTATTAGTGGTTATGGCCACCACAATAGTAAACGGGACACCGGTTGTCG 173 ||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 119 TGCTTCTTGTGCTACTAGTGGTTATGGCCACCACAATAGCAAACGGGACACCGGTTGTCG 178 Query 174 ATAAAGCAAAAGATGCAGCAGA-ATCAGTTGGTGATAAAGTCAGTGAA-GCAGCTACAAC 231 ||||||||||| ||||||| | | |||||| |||| || || || ||||||||| | Sbjct 179 ATAAAGCAAAAAATGCAGC-TACAGCAGTTGAAGATACAG-CAAAAAATGCAGCTACAGC 236 Query 232 AGTTGGCGATGCAGCTGCATCAGTTGGTGTTAAAGTACCAGGAGCCAAAGCAGGCGGTGC 291 |||||||| |||||||||||||||||||| ||||||| |||| |||||| ||||| || Sbjct 237 AGTTGGCGGTGCAGCTGCATCAGTTGGTGCTAAAGTATCAGGTGCCAAACCAGGC---GC 293 Query 292 ATCACTTGATGTTAAAGCATCCGGAGCTAAAGGAGATGGCAAAACTGATGACAGTGCGGC 351 | || |||||||||||||||| ||||| |||||||| ||||||||||||| |||||||| Sbjct 294 AGCAGTTGATGTTAAAGCATCAGGAGCCAAAGGAGACAGCAAAACTGATGATAGTGCGGC 353 Query 352 ATTTGCGGCTGCATGGAAAGAAGCTTGTGCAGCAGGGAGCACGATTACAGTGCCCAAAGG 411 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 354 ATTTGCGGCTGCATGGAAAGAAGCTTGTGCAGCAGGGAGCACAATTACAGTGCCAAAAGG 413 Query 412 TGAGTATTTGGTAGAGAGCCTAGAGTTCAAAGGTCCATGCAAAGGTCCAGTCACTTTGGA 471 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 414 TGAGTATATGGTAGAGAGCCTAGAGTTCAAAGGTCCATGCAAAGGTCCAGTCACTTTGGA 473 Query 472 ATTGAATGGCAATCTT-AAGGCTCCGGCTACGGTCAAGACCTCTAAACCTCATTCCGGAT 530 ||||||||||||| || |||||||||||||||||||||||| |||| || ||| |||||| Sbjct 474 ATTGAATGGCAAT-TTCAAGGCTCCGGCTACGGTCAAGACCACTAAGCCACATGCCGGAT 532 Query 531 GGATTGATTTCGAAAACATCGCTGATTTCACTTTGAATGGAAACGGAGCCATTTTTGACG 590 |||||||||||||||| || |||||||||||||||||||||||| ||| |||||||||| Sbjct 533 GGATTGATTTCGAAAATATAGCTGATTTCACTTTGAATGGAAACAAAGCTATTTTTGACG 592 Query 591 GTCAAGGTTCCCTCGCTTGGAAGGCCAATGACTGCGCCAAAACCGGCAAATGCAACTCTC 650 ||||||| ||||||||||||||||||||||| || |||||||| |||||||||||||||| Sbjct 593 GTCAAGGGTCCCTCGCTTGGAAGGCCAATGATTGTGCCAAAACTGGCAAATGCAACTCTC 652 Query 651 TCCCCATCAACATCCGATTCACGGGTCTAACAAACTCGAAA-ATTAAGAGTATTACATCA 709 |||| ||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||| Sbjct 653 TCCCTATCAACATCCGATTCACTGGTCTAACAAACTC-AAAGATTAATAGTATTACATCA 711 Query 710 ACAAACAGCAAACTTTTCCACATGAACATCCTTAACTGCAAAAACATAACTCTTGAGGAT 769 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| Sbjct 712 ACAAACAGCAAACTTTTCCACATGAACATCCTTAACTGCAAGAACATTACTCTTTCGGAT 771 Query 770 ATTGGTATTGATGCACCTCCGGAGAGTCTCAACACCGATGGGATCCACATCGGAAGGTCC 829 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 772 ATTGGTATTGATGCACCTCCGGAGAGTCTCAACACCGATGGTATCCACATCGGAAGGTCC 831 Query 830 AATGGCGTCAACTT-ATTAGGGGCAAAGATTAAAACCGGAGATGACTGCGTTTCCATTGG 888 ||||| |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 832 AATGGAGTCAACTTAATT-GGGGCAAAGATCAAAACCGGAGATGACTGCGTTTCCATTGG 890 Query 889 AGATGGTACCGAAAATCTCATTGTTGAGAACGTAGAATGTGGACCGGGACACGGAATTTC 948 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 891 AGATGGTACCGAAAATCTCATTGTTGAGAACGTAGAATGTGGACCAGGACACGGAATTTC 950 Query 949 CATTGGAAGTCTCGGAAGATACCCTAATGAGCAACCAGTAAAAGGAGTCACTGTGAGGAA 1008 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 951 CATTGGAAGTCTTGGAAGATACCCTAATGAGCAACCAGTAAAAGGAGTCACCGTGAGGAA 1010 Query 1009 ATGCCTCATCAAGAACACTGACAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCCCC 1068 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1011 ATGCCTCATCAAGAACACTGACAATGGTGTTCGCATCAAGACATGGCCAGGATCTCCCCC 1070 Query 1069 CGGTATCGCCTCCAACATTCTTTTCGAAGATATCACAATGGACAATGTTAGCAC-CCCCG 1127 ||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 1071 CGGCATCGCCTCCAACATTCTTTTCGAAGATATCACAATGGACAATGTTAGC-CTTCCCG 1129 Query 1128 TTCTCATCGACCAAGAGTACTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGAAAG 1187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1130 TTCTCATCGACCAAGAGTACTGTCCTTATGGCCACTGCAAAGCTGGGGTACCATCGCAAG 1189 Query 1188 TGAAGTTGTCGGACGTGACTATCAAGAACATTAAGGGTACATCAGCAACAAAGGTGGCTG 1247 |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1190 TGAAGTTGTCAGACGTGACTATCAAGGGCATTAAGGGTACATCAGCAACAAAGGTGGCTG 1249 Query 1248 TGAAGCTAATGTGCAGTAAAGGCGTTCCTTGCACCAATATTGCTCTCGCTGACATCAACT 1307 |||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||| Sbjct 1250 TGAAGCTAATGTGCAGCAAAGGAGTGCCTTGCACCAATATTGCTCTCTCTGACATCAACT 1309 Query 1308 TGGTCCACAACGGCAAAGAGGGACCAGCTGTCTCGGCATGTTCTAACATCAAGCCTATTC 1367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1310 TGGTCCACAACGGCAAAGAGGGACCAGCTGTCTCGGCATGTTCTAACATCAAGCCTATTC 1369 Query 1368 TCTCCGGAAAGTTGGTTCCAGCGGCTTGCACTGAAGTCGCTAAAACGGGTCCTTAAATTA 1427 || ||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| Sbjct 1370 TCAGCGGAAAGTTGGTTCCAGCGGCTTGCACTGAAGTTGCTAAACCGGGTCCATAAATTA 1429 Query 1428 AAGGCGCATATATGTCCACCATAAATCCATCCAATCTGGTGAAGACGCTTTGATTAGGGT 1487 ||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1430 AAGTCGC-T-T--GTCCACCATAAATCCATCCAATCTGGTGAAGACGCTTTGATTAGGGT 1485 Query 1488 GCGATGATAAAGTTTTGCAATAtttttttGACATAAAAATTATATGAATATTT 1540 ||||||| ||| ||||||||||||||||||||||| |||||||||| |||||| Sbjct 1486 GCGATGAAAAAATTTTGCAATATTTTTTTGACATATAAATTATATGGATATTT 1538 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76555831125 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5