BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497388
Length=445
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03341.1 | Symbols: | unknown protein; Has 30201 Blast hits... 494 4e-139
> AT3G03341.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:790130-790648
REVERSE LENGTH=519
Length=519
Score = 494 bits (267), Expect = 4e-139
Identities = 345/379 (91%), Gaps = 20/379 (5%)
Strand=Plus/Plus
Query 1 ATCTTCCACTTCTTGTGCTACTCATATTCCATACATCATATCCCTATAACATCAACAAAC 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTTCCACTTCTTGTTCTACTCATATTCCATACATCATATCCCTATAACATCAACAAAC 60
Query 61 ATTTCATCGGTTTGATCAGtttttttAACCAACGATGATTCCGATATGCGTGCAATGCGG 120
|||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 61 ATTTCATCGGCTTGATCAGTTTTT--AACCAACGATGATTCCGATATGCGTGCAGTGCGG 118
Query 121 AACAGGCGGAAACCCATGTAGATGCAAAGTGGTAGGACCGACGTTAGGGCTTGTGGCATT 180
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 119 AACGGGCGGAAACCCTTGTAGATGCAAAGTGGTAGGACCGACGTTAGGGCTTGTGGCGTT 178
Query 181 TGTAGCAGCCGGAATAGTGGAATGGCC------AGCATTGGTTTATATCTTTAAACACGC 234
|||||||||||||||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 179 TGTAGCAGCCGGAATAGTTGAATGGCCGGTCGGAGCATTGGTTTATATCTTTAAGCACGC 238
Query 235 -AAAGGGTCGCCGCATTATGGGTCATCCAGCCACCCATGTTTATCCCAAAGTCTCTCGTT 293
||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 239 CAAAGG-TCGCCGCATTATGGGTCATCCGGCCACCCATGTTTATCCCAAGGTCTCTCGTT 297
Query 294 CCATTCCCATATGATTATGATGAATTCAT-GATCT-CACTTTT-A-T-ATGTTTCTAAGT 348
||||||||||||||||||||||| || || || || || | | | | | || ||||||
Sbjct 298 CCATTCCCATATGATTATGATGACTT-ATTGA-CTTCA-TGATCACTCAC-TT-CTAAGT 352
Query 349 TATATTGTATCTTATCTTT 367
|||||||||||||||||||
Sbjct 353 TATATTGTATCTTATCTTT 371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21162722329
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5