BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497391
Length=595
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40080.1 | Symbols: ELF4 | Protein of unknown function (DUF1... 869 0.0
> AT2G40080.1 | Symbols: ELF4 | Protein of unknown function (DUF1313)
| chr2:16734294-16734912 REVERSE LENGTH=619
Length=619
Score = 869 bits (470), Expect = 0.0
Identities = 562/602 (93%), Gaps = 23/602 (4%)
Strand=Plus/Plus
Query 1 AATTAAAAATTATTATGAAGAGGAACGGCGAGACGAAACGGCGGAGGAACGTGGCGGAGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 AATTAAAAATTATTATGAAGAGGAACGGCGAGACGAAACGGCGGAGGAACGTGGCGGAGG 78
Query 61 AAGCAGAGCAGGGAGGAGGAGGAGAAGATCCAGCGATGTGGGAGAATCTTGACCGGAATT 120
| ||||||| | | ||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 79 AGGCAGAGC----A-G-GGA-GAG--GATCCGGCGATGTGGGAGAATCTTGACCGGAATT 129
Query 121 TCAGACAAGTGCAATCAGTTTTGGACAGAAACAGATCACTGATTCAACAAGTCAACGACA 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 130 TCAGACAAGTGCAATCAGTTTTAGACAGAAACAGATCACTGATTCAACAAGTCAACGACA 189
Query 181 ATCACCAATCGAGAATGGCTGATAACATGTCGAAGAACGTTGCTTTGATTCAAGAACTCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 ATCACCAATCGAGAATGGCTGATAACATGTCGAAGAACGTTGCTTTGATTCAAGAACTCA 249
Query 241 ACGGAAACATTTCCAAGGTTGTTAACATGTATTCTGATCTCAATACTAGTTTCTCATCGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 250 ACGGAAACATTTCCAAGGTTGTTAACATGTATTCTGATCTCAATACTAGTTTCTCGTCGG 309
Query 301 GGTTTCACGGTGGAAAGAACGGTCACGACGGTGGTGGTGCTGCCGGAACAAGAGCTTAAT 360
| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 310 GCTTTCACGGTGGGAAGAACGGTCACGATGGTGGTGGTGCTGCCGGAACTAGAGCTTAAT 369
Query 361 GAACCCGAATCAAATTGTTTCTTCTTAGTTGGACCGGCCGGTTTGAGAATTTTGAACCAG 420
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 370 GAACCGGAATCAAATTGTTTCTTCTTAGTTGGACCGGCCGGTTTGAGAATTTTGAATCTG 429
Query 421 TCCGGTTCAAGCTAGGAAA-AAAGTTATTATATGTT-AGTTTTT--ATTGCAATGATGAT 476
|||||||||||||| || | ||||| | | ||||| ||||||| ||||||||||||||
Sbjct 430 TCCGGTTCAAGCTATGATATAAAGT-A--A-ATGTTTAGTTTTTGTATTGCAATGATGAT 485
Query 477 TGTTGTTATTAGAATAATCCGTGGGAGCAAACCCATCT--ATTGGG-TTATTTTAATTAT 533
||| |||| ||||||||||||||||||||||||||| |||||| |||||||| ||||
Sbjct 486 TGTCGTTA---GAATAATCCGTGGGAGCAAACCCATCTCTATTGGGGTTATTTTAGTTAT 542
Query 534 GGTTTTGAGTCTTTTTCAATGTGTCTCTACTGCAATTTCTCTAATGATAATAATAATAAT 593
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 543 GGTTTTGAGTCTTTTTCAATGTGTCTCTACTGCAATCTCTCTAATGATTATAATAATAAT 602
Query 594 TG 595
||
Sbjct 603 TG 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28633463790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5