BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497396
Length=474
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38580.1 | Symbols: | FBD-like domain family protein | chr5... 597 3e-170
AT5G38590.2 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 374 5e-103
AT5G38570.1 | Symbols: | F-box/RNI-like superfamily protein | ... 302 3e-81
> AT5G38580.1 | Symbols: | FBD-like domain family protein | chr5:15451164-15451842
REVERSE LENGTH=507
Length=507
Score = 597 bits (323), Expect = 3e-170
Identities = 393/427 (92%), Gaps = 4/427 (1%)
Strand=Plus/Plus
Query 29 ATGTTGTGTATGATGATGGTTTA-GTTTTCAAGGAGCTTGAACATCTGAACCTATGTGTG 87
||| || || ||||||||| ||| |||||||| ||||| ||||||||||||||||||||
Sbjct 71 ATGATGGGTTTGATGATGG-TTATGTTTTCAACCAGCTTAAACATCTGAACCTATGTGTG 129
Query 88 TGTAGAGAGGATTCGTCGAATCTCTTTGGCCAGTTACTCAAGGATTCTCCTAACTTACGA 147
|| | |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 130 TGCAAAGAGGAGTCGTCGAATCTCCTTGGCCAGTTACTCAAAGATTCTCCTAACTTACGA 189
Query 148 ATATTAGACATCTCTGTAGTGAAAGATCATGCAACGGATGAGCTTAATGGTACGGTTTCC 207
||||||||||||||||| ||||||||||||| ||| ||||||| |||||||| |||||||
Sbjct 190 ATATTAGACATCTCTGTTGTGAAAGATCATGGAACAGATGAGCGTAATGGTATGGTTTCC 249
Query 208 TGGAATCAACCGAATTTCGTTCCTGAATGCTTGTTGTCGAGTCTACAAACATTAAAGTGG 267
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 250 TGGAATCAACCGAATTTTGTTCCTGAATGCTTGTTGTCGAGTCTACAAACATTATTGTGG 309
Query 268 TCACGATACTATGGGAGACCACAAGATAGAGATATTGCGGTTTATATCTTGAAAAACGCT 327
|||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 310 TCACGATACTTTGGGAGACAACAAGATAGAGATATTGCGGTTTATATCCTGAAAAACGCT 369
Query 328 CGTCACTTAAAGACGGCAACAATCTTGGCTGATACAGAGGAACATTATGTTCCAAACCTT 387
||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 370 TGTCACTTAAAGACAGCAACAATCTTGGCTGATACAGATGAACATGATGTTCCAAACCTT 429
Query 388 CAAATGATCAAGGAGTTGGCACTTTCTCCACGAGCTTCAAG-CACATGCCAACTCGTATT 446
|| ||||||||||||||||||||||||| |||| ||||| | || |||||||||||||||
Sbjct 430 CAGATGATCAAGGAGTTGGCACTTTCTCTACGAACTTCA-GTCATATGCCAACTCGTATT 488
Query 447 TGTTGAG 453
|||||||
Sbjct 489 TGTTGAG 495
> AT5G38590.2 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:15451945-15453897 REVERSE LENGTH=1624
Length=1624
Score = 374 bits (202), Expect = 5e-103
Identities = 321/377 (85%), Gaps = 14/377 (4%)
Strand=Plus/Plus
Query 36 GTATGATGATGGTTTAGTTTTCAAGGAGCTTGAACATCTGAACCTATGTGTGTGTAGAGA 95
||||| ||||||||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1104 GTATGGTGATGGTTTTGTTTTCAACCAGCTTGAACATCTGACCCTATGTGTGTGTAGAGG 1163
Query 96 GGATTCGTCGAATCTCTTTGGCCAGTTACTCAAGGATTCTCCTAACTTACGAATATTAGA 155
||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 GGATTCGCCGAGTCTCCTTGGCCAGTTACTCAAGGATTCTCCTAACTTACGAATATTAGA 1223
Query 156 CATCTCTGTAGTGAAAGATCATG-CAACGGATGAGCTTAATGGTACGGTTTCCTGGAATC 214
||||||||| || ||||||||| | |||| | || | || || | |||||||
Sbjct 1224 AATCTCTGTAATGGAAGATCATGTGGA-TGATGTGGGTATTAGTTTGGATGGTTGGAATC 1282
Query 215 AACCGAATTTC-GTTCCTGAATGCTTGTTGTCGAGTCTACAAACATTAAAGTGGTCAC-G 272
|||| || ||| ||||||||||||||||||||||||||||||| || |||||| ||| |
Sbjct 1283 AACC-AAGTTCTGTTCCTGAATGCTTGTTGTCGAGTCTACAAATTTTCAAGTGGCCACAG 1341
Query 273 ATAC-TATGGGAGACCACAAGATAGAGATATTGCGGTTTATAT-CTTGAAAAACGCTCGT 330
||| | |||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct 1342 -TACCT-TGGGAGACCAGAAGATAGAGATATTGCGGTTTATATTCT-GAAAAACGCTCGT 1398
Query 331 CACTTAAAGACGGCAACAATCTTGGCTGATACA-GAGGAACATTATGTTCCA-AACCTTC 388
|||||||||| | |||||||||||||||||| | | | ||| || |||| || ||| | |
Sbjct 1399 CACTTAAAGAAGACAACAATCTTGGCTGATAGATGTG-AACGTTTTGTTACACAACGT-C 1456
Query 389 AAATGATCAAGGAGTTG 405
|||||||||||||||
Sbjct 1457 GGATGATCAAGGAGTTG 1473
> AT5G38570.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:15449279-15450601 REVERSE LENGTH=1140
Length=1140
Score = 302 bits (163), Expect = 3e-81
Identities = 352/436 (81%), Gaps = 41/436 (9%)
Strand=Plus/Plus
Query 35 TGTATGATGATGG-TTTAGTTTTCAAGGAGCTTGAACATCTGAACCTATGTGTGTGTAGA 93
|||||| |||||| |||| ||||||| | |||||||||||||| |||||| |||| |
Sbjct 731 TGTATGGTGATGGTTTTA-TTTTCAACCATCTTGAACATCTGAAACTATGTATGTGCCCA 789
Query 94 GAGGATTCGTCGAATCTCTTT-GGCCAGTTACTC-AAGGATTCTCCTAACTTACGAA-TA 150
|||||||||||||| ||| ||||| || ||| |||| |||||||||| ||| || ||
Sbjct 790 TTTGATTCGTCGAATCT-TTTGGGCCAATTGCTCAAAGG-TTCTCCTAACCTAC-AAGTA 846
Query 151 TTAGACATCTCTGTAGTGAAAGATCATGCAACGGATGAGCTTAATGGTACGGTTTCCTGG 210
||||||| ||| | || | | ||| | | | | ||||| || |||| ||||
Sbjct 847 TTAGACA--TCT-T--TG--A-A--ATG--A---A--A-CGTAATGATATTGTTTGCTGG 888
Query 211 AATCAACCGAATTTC-GTTCCTGAATGCTTGTTGTCGAGTCTACAA-ACATTAAAGTGGT 268
||||||||| | ||| |||| ||| |||||||||||||||||| || | ||| || ||||
Sbjct 889 AATCAACCG-AGTTCTGTTCTTGAGTGCTTGTTGTCGAGTCTA-AAGATATTGAACTGGT 946
Query 269 CACG-ATACTATGGGAGACCACAAGATAGAGATATTGCGGTTTATATCTTGAAAAACGCT 327
|| | ||| | ||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 947 CA-GCATATTTTGGGAGACCACAAGATAGAGATATTGCAGTTTACATCTTGAAAAACGCT 1005
Query 328 CGTCACTTAAAGACGGCAACAATCTTGGCTGAT-ACAGAGGAACATTATGTTCCAA-ACC 385
||||||||||||| |||||| ||||| ||||| | ||| || || |||||| || | |
Sbjct 1006 TGTCACTTAAAGACTGCAACATTCTTGACTGATAAAAGAATAA-ATGATGTTCGAAGA-C 1063
Query 386 TTCAA-ATGATCAAGGAGTT-GGCACTTTCTCCACGAGCTTCAAGCACATGCCAACTCGT 443
|| || |||||||||||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 1064 TT-AAGATGATCAAGGAGTTAAG-ACTTTCTCCCCGAGCTTCAAGCACATGCCAACTCGT 1121
Query 444 ATTTGTTGAGGA-TTT 458
||| | |||||| |||
Sbjct 1122 ATTCGGTGAGGACTTT 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22555132003
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5