BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497398
Length=1820
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27690.1 | Symbols: CYP94C1 | cytochrome P450, family 94, su... 2109 0.0
> AT2G27690.1 | Symbols: CYP94C1 | cytochrome P450, family 94,
subfamily C, polypeptide 1 | chr2:11809306-11811215 FORWARD
LENGTH=1910
Length=1910
Score = 2109 bits (1142), Expect = 0.0
Identities = 1262/1322 (95%), Gaps = 0/1322 (0%)
Strand=Plus/Plus
Query 27 CCTCATCAACAATGTTACTAATCATAtctttcatcatcgtctccttcttcttcttcataa 86
|||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||
Sbjct 57 CCTCATCAACAATGTTACTAATCATATCATTCACCATCGTCTCCTTCTTCTTCATCATAA 116
Query 87 tattctcactctttcacatactcttccttcAAAAATTACGTTACTGCAACTGCGAGATCT 146
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 117 TATTCTCACTCTTTCACTTACTCTTCCTTCAAAAACTACGTTACTGCAACTGCGAGATCT 176
Query 147 GCCATGCTTATCTCACTTCAAGCTGGAGAAAAGACTTCATCAATCTCAGTGATTGGTACA 206
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 177 GTCATGCTTATCTCACTTCAAGCTGGAAAAAAGACTTCATCAATCTCAGTGATTGGTACA 236
Query 207 CTCATCTTCTCCGGCGATCTCCAACGTCAACGATCAAAGTCCACGTCTTAAACAGTGTTA 266
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 237 CTCATCTTCTCCGGCGGTCTCCGACGTCAACGATCAAAGTACACGTCTTAAACAGCGTTA 296
Query 267 TCACAGCGAATCCATCAAACGTTGAACATATCCTCAAAACCCATTTCCACAGTTACCCAA 326
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 297 TCACAGCGAATCCATCAAACGTTGAACATATCCTCAAAACCAATTTCCACAATTACCCAA 356
Query 327 AAGGCAAACAATTCTCCGTTATCCTTGGTGATCTTTTAGGCCGTGGAATCTTCAATTCCG 386
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 357 AAGGCAAACAATTCTCTGTTATCCTCGGTGATCTTTTAGGCCGTGGAATCTTCAATTCCG 416
Query 387 ATGGTGACACGTGGCGTTTCCAGAGAAAACTCGCGAGTTTGGAACTTGGAAGTGTTTCTG 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ATGGTGACACGTGGCGTTTCCAGAGAAAACTCGCGAGTTTGGAACTTGGAAGTGTTTCTG 476
Query 447 TAAGAGTTTTCGCCCATGAGATTGTTAAGACCGAGATCGAGACACGTCTTCTTCCGATTT 506
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 477 TAAGAGTTTTCGCTCATGAGATTGTTAAGACCGAGATCGAGACACGTCTTCTTCCGATAT 536
Query 507 TGACTTCATTCTCCGACAATCCTGGTTCGGTTTTGGATCTACAAGATGTGTTTAGAAGAT 566
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 537 TGACTTCGTTTTCCGACAATCCTGGTTCTGTTTTGGATCTACAAGATGTGTTTAGAAGAT 596
Query 567 TCTCGTTTGATACGATTAGTAAATTGTCATTTGGGTTTGACCCAGATTGTCTCCGGTTAC 626
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 597 TCTCGTTTGATACGATTAGTAAATTGTCGTTTGGGTTTGACCCAGATTGTCTCCGGTTAC 656
Query 627 CTTTTCCGATGTCGGAATTCGCCGTCGCTTTCGATACGGCCTCGACGTTATCGGCGAAAC 686
|||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 657 CTTTTCCGATATCGGAATTCGCCGTCGCTTTCGATACGGCGTCGTTGTTATCGGCGAAAC 716
Query 687 GAGCTTTAGCTCCGTTTCCTCTGTTATGGAAAATCAAAAGGCTTTTAAGAATTGGTTCTG 746
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 717 GAGCTTTAGCTCCGTTTCCTCTGTTATGGAAAACCAAAAGGCTTTTAAGAATTGGTTCTG 776
Query 747 AGAAAAAGCTTAAAGAATCGATCAATGTGATAAACCGGTTAGCTGGTGATTTAATCAAGC 806
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGAAAAAGCTTCAAGAATCTATCAATGTGATAAACCGGTTAGCTGGTGATTTAATCAAGC 836
Query 807 ATCGGAGGTTAACCGGTTTAATGGGTAAAAACGATTTGATTTCGAGATTCATGGCGGTGG 866
| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
Sbjct 837 AACGGAGGTTAACCGGTTTGATGGGTAAAAATGATTTGATTTCTAGATTCATGGCGGTTG 896
Query 867 TAGCGGAGGACGATGACGAGTATCTCCGAGACATCGTTGTGAATTTTCTATTGGCGGGTC 926
| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 897 TGGCGGAGGACGATGATGAGTATCTCCGAGACATCGTTGTGAGTTTTCTATTGGCTGGTC 956
Query 927 GGGATACGGTTGCAGCTGGTTTAACCGGTTTTTTCTGGTTATTGATGCGTCATCCGGATG 986
|||||||||| || |||||||||||||| |||||||||||||||| ||||||||||| |
Sbjct 957 GGGATACGGTAGCTGCTGGTTTAACCGGATTTTTCTGGTTATTGACCCGTCATCCGGAAG 1016
Query 987 TGGAGAACCGGATTCGGGAAGAATTAGACCGGGTGATGGGGACCGGTTTTGACTCGGTCA 1046
||||||||||||| ||||||||| | |||||||| |||||||||||||||||||| ||||
Sbjct 1017 TGGAGAACCGGATCCGGGAAGAACTGGACCGGGTTATGGGGACCGGTTTTGACTCAGTCA 1076
Query 1047 CTGCACGTTGCGATGAAATGAGAGAGATGGATTATTTGCATGCGGCGCTTTACGAGAGCA 1106
|||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1077 CTGCTCGTTGCGATGAAATGAGAGAGATGGATTATTTGCATGCGTCGCTGTACGAGAGCA 1136
Query 1107 TGAGATTGTTTCCGCCGGTTCAATTCGATTCCAAATTTGCTTTAAACGATGACGTTTTGT 1166
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1137 TGAGATTGTTTCCGCCGGTTCAATTCGATTCCAAATTCGCTTTAAACGATGACGTTTTGT 1196
Query 1167 CTGATGGTACATTTGTGAAAAGAGGGACTAGAGTCACGTACCATGCTTATGCAATGGGTC 1226
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1197 CTGATGGTACATTTGTGAATAGTGGGACTAGAGTCACGTACCATGCTTATGCAATGGGTC 1256
Query 1227 GGATGGACCGGATCTGGGGTCCGGATTACGAAGAGTTTAAACCGGAGAGGTGGTTGGATA 1286
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1257 GGATGGACCGGATCTGGGGCCCGGATTACGAAGAGTTTAAACCAGAGAGGTGGTTGGATA 1316
Query 1287 GCGAAGGAAAATTCCGGCCCGAGAATCCGGTTAAGTACCCGGTTTTTCAGGCCGGAGCTA 1346
|||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1317 ACGAAGGTAAGTTCCGGCCCGAGAATCCGGTTAAGTACCCGGTTTTCCAGGCCGGAGCTA 1376
Query 1347 GG 1348
||
Sbjct 1377 GG 1378
Score = 593 bits (321), Expect = 1e-168
Identities = 427/475 (90%), Gaps = 19/475 (4%)
Strand=Plus/Plus
Query 1348 GATGAAATCCATAGCCGTGGCAATCAATAGGAGGTTCAAAACACGGCTCGCAAGTCTCGA 1407
||||||||||||||| |||||||||| |||||||||| |||||||| ||||||||| |||
Sbjct 1411 GATGAAATCCATAGCTGTGGCAATCATTAGGAGGTTCGAAACACGGGTCGCAAGTCCCGA 1470
Query 1408 ATCAACCAAAACACTCCGGTTTGCGCCTGGTTTAACCGCGACAGTTAATGGTGGATTGCC 1467
| ||||| | |||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 1471 AACAACCGAGACACTCCGGTTTGCGCCTGGTTTAACTGCGACGGTTAACGGTGGATTGCC 1530
Query 1468 GGTTATAATCCAAGAAAGGAGTCAAGACTCATAAAAGCATTAAGTCAAGATATAAAATAA 1527
|||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1531 GGTTATGATCCAAGAAAGGAGT-TAGACTCATAAAAGCATTAAGTCAAGATATATAATAA 1589
Query 1528 TACTTTA-CAAAACCATAGATAGAGTCTGTGTTCTCTAACCGACCAATTATTGTTAACAT 1586
||||| | ||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1590 TACTTAATGAAAACCATAGATAGAGTCTTTGTTCTCTAACTGACCAATTATTGTTAACAT 1649
Query 1587 GCAAACACACTTGTTAACAA-TATCTATGTGTATCATTATCTCTTATTTAATTTAGCAAA 1645
||||||||||||||| |||| || |||||||| ||||||||||||||||||||||||||
Sbjct 1650 GCAAACACACTTGTTGACAACAAT-TATGTGTACCATTATCTCTTATTTAATTTAGCAAA 1708
Query 1646 GCCAAGTGGGTCTTAATTTCTC-GGAATCTCAATTGTATAATGCTTAAATTTAATATGAT 1704
|||||||||||||||| |||| ||||||| |||||||||||||||||| ||||||||||
Sbjct 1709 GCCAAGTGGGTCTTAAGTTCTTTGGAATCTTAATTGTATAATGCTTAAAGTTAATATGAT 1768
Query 1705 TACGCAATTGACCCAA-AA-GGCGTTCAGATTTATG-TAAATTTGAATAGTTTA-TT--- 1757
|||| ||||||||||| || |||||||||||||||| |||| |||||||||||| ||
Sbjct 1769 TACGTAATTGACCCAAGAAAGGCGTTCAGATTTATGGTAAACTTGAATAGTTTACTTAAG 1828
Query 1758 ---TTA-GAGGATGGTTTATGATAAGATTGCTTGATT-CACACGAA-GTGTATAT 1806
||| |||||||||||||||||| ||||||| ||| |||||||| |||| |||
Sbjct 1829 AAGTTAAGAGGATGGTTTATGATAACATTGCTT-ATTTCACACGAATGTGTGTAT 1882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90059777730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5