BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497405
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46290.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1487 0.0
AT2G46280.1 | Symbols: TRIP-1, TIF3I1 | TGF-beta receptor inter... 1404 0.0
AT5G57650.1 | Symbols: | eukaryotic translation initiation fac... 100 2e-20
> AT2G46290.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:19005771-19007879 REVERSE LENGTH=1289
Length=1289
Score = 1487 bits (805), Expect = 0.0
Identities = 927/988 (94%), Gaps = 0/988 (0%)
Strand=Plus/Plus
Query 1 GATGACGCCGATCTTGATGAAGGGACATGAACGTCCATTGACATTCCTCAGGTACAACAG 60
||||| |||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 163 GATGAGGCCGATTTTGATGAAGGGACATGAACGTCCATTGACGTTCCTGAGGTACAACAG 222
Query 61 AGATGGCGATCTGCTTTTCTCCTGCGCCAAGGACCACACTCCCACCCTCTGGCTTGCCCA 120
| |||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||| |
Sbjct 223 AAATGGTGATCTGCTTTTCTCCTGCGCCAAAGACCACACTCCCACAGTCTGGTTTGCCGA 282
Query 121 TAACGGCGAGCGCCTTGGAACTTACCGTGGCCACAATGGTGCTGTTTCGTGCTGTGATGT 180
|||||||||||| ||||| |||||||||||||||| ||||||||||| |||||||||| |
Sbjct 283 TAACGGCGAGCGTCTTGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATAT 342
Query 181 CTCCCGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTCTGGGA 240
|||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 343 CTCCAGAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGTGGGA 402
Query 241 TGTAAAATCTGGAAAACAATTATTCACATTCAATTTTGGTTCTTCGGCGAGGTCTGTGGA 300
||| |||||||| ||| |||| ||||| ||||| |||||| | | || |||||||||||
Sbjct 403 TGTGAAATCTGGCAAAGAATTGTTCACTTTCAAGTTTGGTGCCCCTGCAAGGTCTGTGGA 462
Query 301 TTTCTCTGTTGGAGATCATCTTGCAGTGATTACCACTGATCACTTCATGGGAGTTTCCTC 360
|||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 463 TTTCTCTGTTGGTGATCATCTTGCAGTGATTACCACTGATCACTTCGTGGGAACTTCCTC 522
Query 361 TGCTATTCATGTGAAACGCATTGCGGAAGATCCCCAAGACCAGGTTGGTGATTCTGTGCT 420
|||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 523 TGCTATTCATGTCAAACGCATTGCAGAAGATCCCGAAGACCAGGTTGGTGATTCTGTGCT 582
Query 421 TGTCCTTCAAAGTCCTGACGGAAAGAAGAAGATCAATAGAGCTGTTTGGGGTCCTCTGAA 480
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 583 TGTCCTTCAAAGTCCTGATGGAAAGAAGAAGATCAATAGAGCTGTTTGGGGTCCCCTGAA 642
Query 481 CCAAACTATTGTTAGTGGTGGTGAAGATACTGTTATCAGAATCTGGGATACCGAGACTGG 540
|||||| ||||||||||||||||||||| ||| |||||||||||||||| | ||||||||
Sbjct 643 CCAAACCATTGTTAGTGGTGGTGAAGATGCTGCTATCAGAATCTGGGATGCAGAGACTGG 702
Query 541 AAAATTGCTCAAGCAATCAGATGTGGAAGTGGGTCACAAGGAGGCCATTACATCGCTCTG 600
||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 703 AAAATTGCTTAAGCAATCAGATGAGGAAGTGGGTCACAAGGAGGCCATTACATCCCTCTG 762
Query 601 CAAAGCAGCTGATGACTCTCACTTCCTTACAGGTTCACATGACAAAACTGCAAAGCTTTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 CAAAGCAGCTGATGACTCTCACTTCCTTACAGGTTCACATGACAAAACTGCAAAGCTTTG 822
Query 661 GGATATGAGATCGCTGACTCTTATTAAGAGTTATACAACAGTGGTGCCTGTAAATGCTGT 720
||| |||||| |||||||||||||||||| ||| || || ||||||||||||||||||||
Sbjct 823 GGACATGAGAACGCTGACTCTTATTAAGACTTACACCACTGTGGTGCCTGTAAATGCTGT 882
Query 721 TGCCATGTCTCCACTTCTCAACCATGTTGTGCTTGGAGGTGGTCAAGATGCATCAGCTGT 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 CGCCATGTCTCCACTTCTCAACCATGTTGTGCTTGGAGGTGGTCAAGATGCATCAGCTGT 942
Query 781 GACTACCACTGATCATCGTGCTGGGAAGTTTGAAGCTAAGTTTTACGACACGATTCTGGA 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 943 GACTACCACTGATCATCGTGCTGGGAAGTTTGAAGCTAAGTTTTACGACACGATTCTGCA 1002
Query 841 AGAGGAAATAGGTGGTGTGAAAGGTCATTTTGGACCTATAAATGCGTTGGCATTCAATCC 900
||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||| |||
Sbjct 1003 AGAGGAAATTGGTGGCGTGAAAGGTCATTTTGGACCTATTAATGCTTTGGCATTCAGTCC 1062
Query 901 TGATGGGAAGAGTTTCTCTAGTGGAGGTGAAGACGGCTACGTGAGGCTGCATCATTTTGA 960
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1063 TGATGGGAAGAGTTTCTCTAGTGGAGGTGAAGACGGCTACGTGAGACTGCATCATTTTGA 1122
Query 961 CTCCAATTACTTCAACATCAAGATTTAG 988
||||||||||||||||||||||||||||
Sbjct 1123 CTCCAATTACTTCAACATCAAGATTTAG 1150
> AT2G46280.1 | Symbols: TRIP-1, TIF3I1 | TGF-beta receptor interacting
protein 1 | chr2:19003426-19005536 REVERSE LENGTH=1360
Length=1360
Score = 1404 bits (760), Expect = 0.0
Identities = 915/991 (92%), Gaps = 6/991 (1%)
Strand=Plus/Plus
Query 1 GATGACGCCGATCTTGATGAAGGGACATGAACGTCCATTGACATTCCTCAGGTACAACAG 60
||||| ||||||| |||||||||||||||||||||||||||| || || |||||||||||
Sbjct 143 GATGAGGCCGATCCTGATGAAGGGACATGAACGTCCATTGACGTTTCTGAGGTACAACAG 202
Query 61 AGATGGCGATCTGCTTTTCTCCTGCGCCAAGGACCACACTCCCACCCTCTGGCTTGCCCA 120
||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct 203 AGAAGGAGATCTGCTTTTCTCCTGCGCCAAGGACCACACACCCACCCTCTGGTTTGCCGA 262
Query 121 TAACGGCGAGCGCCTTGGAACTTACCGTGGCCACAATGGTGCTGTTTCGTGCTGTGATGT 180
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct 263 TAACGGCGAGCGCCTTGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGT 322
Query 181 CTCCCGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTCTGGGA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 323 CTCCCGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGTGGGA 382
Query 241 TGTAAAATCTGGAAAACAATTATTCACATTCAATTTTGGTTCTTCGGCGAGGTCTGTGGA 300
|||||||||||||||| |||| ||||| ||||| ||| | | | |||||||||||||
Sbjct 383 TGTAAAATCTGGAAAAGAATTGTTCACTTTCAAGTTTAATGCCCCTACGAGGTCTGTGGA 442
Query 301 TTTCTCTGTTGGAGATCATCTTGCAGTGATTACCACTGATCACTTCATGGGA--GTTTCC 358
|||| |||||||||||| |||||||||||||||||||||||||||| ||| | || ||
Sbjct 443 TTTCGCTGTTGGAGATCGTCTTGCAGTGATTACCACTGATCACTTCGTGG-ACCGTA-CC 500
Query 359 TCTGCTATTCATGTGAAACGCATTGCGGAAGATCCCCAAGACCAGGTTGGTGATTCTGTG 418
|||||||||||||||| || |||||||||||||| | || |||| || ||| ||||||
Sbjct 501 GCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACAGGATGCTGAGTCTGTG 560
Query 419 CTTGTCCTTCAAAGTCCTGACGGAAAGAAGAAGATCAATAGAGCTGTTTGGGGTCCTCTG 478
||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||
Sbjct 561 CTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGATCAATAGAGCTGTTTGGGGTCCCCTG 620
Query 479 AACCAAACTATTGTTAGTGGTGGTGAAGATACTGTTATCAGAATCTGGGATACCGAGACT 538
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 621 AACCAAACTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAGACG 680
Query 539 GGAAAATTGCTCAAGCAATCAGATGTGGAAGTGGGTCACAAGGAGGCCATTACATCGCTC 598
||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||
Sbjct 681 GGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACAAGAAGGACATTACATCGCTC 740
Query 599 TGCAAAGCAGCTGATGACTCTCACTTCCTTACAGGTTCACATGACAAAACTGCAAAGCTT 658
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 741 TGCAAAGCAGCTGATGACTCTCACTTCCTTACAGGTTCACTTGACAAAACTGCAAAGCTT 800
Query 659 TGGGATATGAGATCGCTGACTCTTATTAAGAGTTATACAACAGTGGTGCCTGTAAATGCT 718
||||| |||||| ||||||||||| |||||| ||| || || |||||||| |||||||||
Sbjct 801 TGGGACATGAGAACGCTGACTCTTCTTAAGACTTACACCACTGTGGTGCCCGTAAATGCT 860
Query 719 GT-TGCCATGTCTCCACTTCTCAACCATGTTGTGCTTGGAGGTGGTCAAGATGCATCAGC 777
|| | || ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 861 GTCTCCC-TGTCTCCACTTCTCAACCATGTTGTACTTGGAGGTGGTCAAGATGCATCAGC 919
Query 778 TGTGACTACCACTGATCATCGTGCTGGGAAGTTTGAAGCTAAGTTTTACGACACGATTCT 837
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 920 TGTGACTACCACTGATCATCGTGCTGGAAAGTTTGAAGCTAAGTTTTACGACAAGATTCT 979
Query 838 GGAAGAGGAAATAGGTGGTGTGAAAGGTCATTTTGGACCTATAAATGCGTTGGCATTCAA 897
| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 980 GCAAGAGGAAATTGGTGGTGTGAAAGGTCATTTTGGACCTATAAATGCTTTGGCATTCAA 1039
Query 898 TCCTGATGGGAAGAGTTTCTCTAGTGGAGGTGAAGACGGCTACGTGAGGCTGCATCATTT 957
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1040 TCCTGATGGGAAGAGTTTCTCTAGTGGAGGTGAAGACGGTTACGTGAGGCTGCATCATTT 1099
Query 958 TGACTCCAATTACTTCAACATCAAGATTTAG 988
||||||| | |||||||||||||||||||||
Sbjct 1100 TGACTCCGACTACTTCAACATCAAGATTTAG 1130
> AT5G57650.1 | Symbols: | eukaryotic translation initiation factor-related
| chr5:23345797-23346285 REVERSE LENGTH=147
Length=147
Score = 100 bits (54), Expect = 2e-20
Identities = 79/90 (88%), Gaps = 5/90 (6%)
Strand=Plus/Plus
Query 307 TGTTGGAGATCATCTTGCAGTGATTACCACTGATCACTTCATGGGA--GTTTCCTCTGCT 364
||||| |||||||||||||||||||||||||||||||||||||| | || | |||||
Sbjct 57 TGTTGAAGATCATCTTGCAGTGATTACCACTGATCACTTCATGG-ACCGTATGG-CTGCT 114
Query 365 ATTCATGT-GAAACGCATTGCGGAAGATCC 393
|||||||| ||| || ||||||||||||||
Sbjct 115 ATTCATGTTGAAGCGTATTGCGGAAGATCC 144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48375483561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5