BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497409
Length=2618
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61550.2 | Symbols: | U-box domain-containing protein kinas... 4047 0.0
AT2G24370.1 | Symbols: | Protein kinase protein with adenine n... 86.1 2e-15
> AT5G61550.2 | Symbols: | U-box domain-containing protein kinase
family protein | chr5:24748102-24751871 FORWARD LENGTH=2715
Length=2715
Score = 4047 bits (2191), Expect = 0.0
Identities = 2462/2595 (95%), Gaps = 9/2595 (0%)
Strand=Plus/Plus
Query 1 ACCAAACATAGGGTTCTTGTTTGTTCTCTGCTTGAACAGAACTACAAGATTAAACAATGG 60
||||||| |||||||||| |||||||||||||| |||||||||||| |||||||||||||
Sbjct 11 ACCAAACTTAGGGTTCTTCTTTGTTCTCTGCTTCAACAGAACTACAGGATTAAACAATGG 70
Query 61 AAGAGAAAAAAGTAGTAAGAGCGTTAAGCGAGCACCTATCACTACCTCCTCCACCATCTC 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 71 AAGAGAAAAAAGTAGTAAGAGCGTTAAGCGAACACCTATCACTACCTCCTCCACCATCTC 130
Query 121 CTTCTGTAGCGGTAGCCATAAATGGGAAGAAGAAGAGCAAATACGTCGCTTTTTGGGCTC 180
||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||
Sbjct 131 CTTCTGTAGCGGTAGCCATCAACGGGAAGAAGAAGAGCAAATACGTCGTTTTTTGGGCTC 190
Query 181 TTGAGAAGTTCATACCTGAAGGTTTCACTGATTTCAAATTGCTTTATGTTCGTCCTCCTG 240
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 191 TTGAGAAGTTTATACCTGAAGGTTTCACTGATTTCAAATTGCTCTATGTTCGTCCTCCTG 250
Query 241 TCAGTTACATCCCTACCCCAATGGGGAATACGATATCGGTATCAGAGCTTAGGGACGACG 300
|| ||||||||||||||||||||||| | || || |||||||||||||||| || || |
Sbjct 251 TCTCTTACATCCCTACCCCAATGGGGATTGCGGTAGCGGTATCAGAGCTTAGAGAGGATG 310
Query 301 TAGTATCAGCTTACAAACAAGAAGTGGATTGGAGCACAAACGAGATGCTTCGTCCCTACA 360
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 311 TAGTATCAGCTTACAAACAAGAACTGGATTGGAGCGCAAACGAGATGCTTCGTCCTTACA 370
Query 361 AGAAAATGTTTGAGAGGAGAAAGGTGCAAGTAGAGGTTTTGGTT-CTGGATTCAAACGAG 419
||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| |||
Sbjct 371 AGAAAATGTTTGAAAGGAGAAAGGTGCAAGTAGAGGTTTT-GTTGCTGGATTCACTTGAG 429
Query 420 CCTGCAGCTGCGATAGCGGAAGAGATTTCTGGAACTGGAGTCACAAAACTGGTAATAGGA 479
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 430 CCTGCAGCCGCGATAGCGGAAGAGATTGCTGGAACTGGAGTCACAAAACTGGTAATAGGA 489
Query 480 ATGTCTCTCCGCGGATTCTTTTCAAGAAAGATCGATATGTCTTCTATGATCGCAACAGCT 539
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 490 ATGTCTCTCCGCGGATTCTTTTCAAGAAAGATCGATATGTCTTCTTTGATCGCAACAGCT 549
Query 540 GTTCCGAGATTCTGCACTGTCTATGTGATCTCGAAGGGGAAACTAGCTTCCGTGCGTCCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GTTCCGAGATTCTGCACTGTCTATGTGATCTCGAAGGGGAAACTAGCTTCCGTGCGTCCT 609
Query 600 TCTGAGTCAGACGCTAGCGGAAGCATAAGATTCGAGAGAAGCAGTTCCACAAGTGGCTCC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 TCTGAGTCAGACGCTAGCGGAAGCATAAGATTCGAGAGAAGCAGTTCCACAAGTGGCTCC 669
Query 660 ACTGATAGTCCAAGACTTCCTCCTGAGTACCAAGACTTTCTCTC-GTTTGTTTCGGAAGG 718
||||||||||| ||||| |||||||||||||||||||||||||| | | ||||||||||
Sbjct 670 ACTGATAGTCCTAGACTCCCTCCTGAGTACCAAGACTTTCTCTCCGCT-GTTTCGGAAGC 728
Query 719 ACAATCCCGAGTCTCTCCTTTTTCCCCTGCTCCGAAAAATTCGTTGGGAAGCAGCGCAGT 778
|||||||||||||||||||||||| ||||||| |||| ||||| ||||||||| ||||||
Sbjct 729 ACAATCCCGAGTCTCTCCTTTTTCTCCTGCTCTGAAACATTCGATGGGAAGCAACGCAGT 788
Query 779 GGTTCAGATGGATACGAGTTCTAGCGGGACGGACCAAGAGGAAGTATCTACTGGGAGAGG 838
|| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 789 GGCTCAGATGGATACGAGTTCGAGCGGGACGGACCAAGAGGAAGTATCTACGGGGAGAGG 848
Query 839 GATGGAGATTGTCCATAGCGGTATTGAAGGAAAGAAGAATAAGGATGAGAGCTTTAGCGC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GATGGAGATTGTCCATAGCGGTATTGAAGGAAAGAAGAATAAGGATGAGAGCTTTAGCGC 908
Query 899 CTCGTTCCCAATGGGAACGGAAGCTTACAACTCGATGAGCTGGACGTCTAAATGGAGAGA 958
|||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 909 TTCGTTCCCAATGGGTACAGAGGCTTACAACTCGATGAGCTGGACGTCTAAATGGAGAGA 968
Query 959 TCACGAGGATAGGAGAGAGATCAGGAGCTCTTCTTCGAGCAACAACCACGATCTAGCCAA 1018
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 969 TCACGAGGATAGGAGAGAGATGAGGAGCTCTTCTTCGAGTAACAACCACGATCTAGTCAA 1028
Query 1019 TATGGACTGGGGTGCCGTGGTTCCTGAGAACTATTCTTGGGTTTCTCATTGTGCCTCTAA 1078
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1029 TATGGACTGGGGTGCCGTGGTTCCTGAGAACTATTCTTGGGTTTCTCATACTGCCTCTCA 1088
Query 1079 CATGTCTGATGGACTCCTCAGTGTCCATTCCATTACCGATAATCAGGTGAATCTGAACTT 1138
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1089 CATGTCTGATGGACTCCTCAGTGTCCATTCTATTACCGATAATCAGGTGAATCTGAACTT 1148
Query 1139 TGAGATAGAGAAGCTGAGAGCGGAGCTGAAGCATGTTCAGGAGATGTATGCCATGGCTCA 1198
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 TGAGATAGAGAAACTGAGAGCGGAGCTGAAGCATGTTCAGGAGATGTATGCCATGGCTCA 1208
Query 1199 AACCGAGACTGTTGGTGCTTCACAAAAGCTGACTGAGCTAAACCAGAGGCGGTTCGAGGA 1258
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1209 AACCGAGACTGTTGGTGCTTCAAAAAAGCTGACTGAGCTAAACCAGAGGCGGTTCGAGGA 1268
Query 1259 ATCCGAGAAGCTTGTGGAACTGAAGGAAAAAGAAGAAGTAGCAAAAGATACAGCCTCAAA 1318
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1269 ATCCGAGAAGCTTGTGGAACTGAAGGAAAAAGAAGAAGTAGCAAAAGATACAGCTTCAAA 1328
Query 1319 GGAGAAGCAAAGGTAC-AACGAGGCGATGAAGGAAGCAGAGAAGGTTAAAGAACTCATGA 1377
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 GGAGAAGCAAAGGTACGAA-GAGGCGATGAAGGAAGCAGAGAAGGTTAAAGAACTCATGA 1387
Query 1378 TGAGAGAGGCTTTACACAGAAGAGAAGCTGAGATCAAAGCAGAGCGCGACGCTAGAGAGA 1437
||| |||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1388 TGAAAGAGGCTTTACATAGAAGAGAAGCTGAGTTCAAAGCAGAGCGCGATGCTAGAGAGA 1447
Query 1438 AAGATAAGCTCCAGGCTTCTCTCGTCTCTCCCGGGATCCAATACCAACATTATACCTGGG 1497
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1448 AAGATAAGCTCCAGGCTTCTCTCGTCTCTCCCGGGGTCCAATACCAACATTATACCTGGG 1507
Query 1498 AGGAAATCACAGCCGCGACTTCTGACTTCGCGGAAAATCTCAAGATTGGAATCGGAGCCT 1557
|||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1508 AGGAAATCGCAGCCGCAACTTCTGACTTCGCAGAAAATCTCAAGATTGGAATCGGAGCCT 1567
Query 1558 ATGGAACCGTCTACAAATGTAATCTTCATCACACGACTGGTGCTGTCAAGGTCCTTCACG 1617
||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1568 ATGGATCAGTCTACAAATGTAATCTACATCACACGACCGGTGCTGTCAAGGTCCTTCACG 1627
Query 1618 CAGGAGAAACTCAGCTCTCTAAACAGTTTGATCAAGAGCTTGAGATCTTGAGCAAAATCC 1677
| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 1628 CTGGAGAAACTCAGCTCTCGAAACAGTTTGATCAAGAGCTTGAGATCTTAAGCAAAATTC 1687
Query 1678 GACATCCTCACCTAGTCCTCCTCCTTGGGGCATGTCCCGAACGAGGCTGCCTTGTCTACG 1737
||||||||||| |||||||||| || ||||| ||||||||||| ||||||||||||||||
Sbjct 1688 GACATCCTCACTTAGTCCTCCTACTAGGGGCGTGTCCCGAACGCGGCTGCCTTGTCTACG 1747
Query 1738 AGTACATGGACAACGGAAGCTTAGATGACCGGTTGATGCTAGTCAACAACACACCACCGA 1797
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1748 AGTACATGGACAACGGAAGCTTAGATGACCGGTTGATGCTAGTCAACGACACACCACCGA 1807
Query 1798 TCCCTTGGTTCGATCGTTTCAGGATTGCATTAGAAGTCGCTTCAGCGCTTGTATTCCTCC 1857
|||||||||| || ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1808 TCCCTTGGTTTGAGCGTTTCAGGATCGCTTTAGAAGTCGCTTCAGCGCTTGTATTCCTCC 1867
Query 1858 ACAAATCAAAACCTAGACCCATCATTCACCGTGATCTCAAACCAGGAAACATCTTGCTTG 1917
||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1868 ACAAATCCAAGCCTAGACCAATCATTCACCGTGACCTCAAACCAGGAAACATCTTGCTTG 1927
Query 1918 ACCACAACTTCGTCAGCAAACTTGGAGACGTTGGTCTGTCAACAATGGTTAACCAAGACG 1977
|||||||||||||||||||||| || || |||||||| ||||||||||||||||||||||
Sbjct 1928 ACCACAACTTCGTCAGCAAACTCGGCGATGTTGGTCTCTCAACAATGGTTAACCAAGACG 1987
Query 1978 ATGATTCATCCAATCTAACCATCTTCAAGAAAACCAGTCCCGTGGGCACGCTCTGTTACA 2037
||| |||||| | ||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1988 ATGTTTCATCTAG---AACTATCTTCAAGCAAACCAGTCCCGTGGGCACGCTCTGTTACA 2044
Query 2038 TCGACCCTGAGTATCAGCGTACCGGGATTATCTCACCTAAATCAGATGTGTACTCCCTCG 2097
| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 2045 TTGACCCTGAGTATCAGCGAACCGGGATTATCTCACCTAAATCGGATGTGTACTCCCTCG 2104
Query 2098 GAATTGTGATTCTGCAGCTATTAACAGCGAAACCCGCGATAGCGATTACTCATATGATGG 2157
|| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||| |||
Sbjct 2105 GAGTTGTGATTCTGCAGCTAATAACCGCGAAACCCGCCATAGCGATTACTCATATGGTGG 2164
Query 2158 AAGAAGCGATCGGAGACGATGCTGAATTTATGGCAATCTTGGATAAGAAAGCTGGGTCTT 2217
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2165 AAGAAGCTATCGGAGACGATGCTGAATTTATGGCAATCTTGGATAAGAAAGCTGGGTCTT 2224
Query 2218 GGCCCATCAGTGAGACCCGTGAGTTAGCCGCTTTGGGATTGTGTTGCACGGAAATGAGAC 2277
||||||||||||| || ||||||||||||||||||||| ||||||| || ||||||||||
Sbjct 2225 GGCCCATCAGTGATACTCGTGAGTTAGCCGCTTTGGGACTGTGTTGTACAGAAATGAGAC 2284
Query 2278 GCAGAGACAGACCGGATCTTAAAGATCAAATCATCCCGGCTTTGGAACGGCTCAAGAAAG 2337
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2285 GCAGAGACAGACCGGATCTTAAAGATCAAATCATCCCGGCTTTGGAACGGCTCAGGAAAG 2344
Query 2338 TTGCCGACAAAGCTCAAAACTCGCTCTCGAGAACTCCATCTGGTCCTCCATCTCATTTCA 2397
| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct 2345 TCGCCGACAAAGCTCAAAACTTGCTTTCGAGAACTCCGTCTGGTCCTCCATCTCATTTCA 2404
Query 2398 TTTGCCCACTCGTAAAGGGAGTGATGAACGAGCCGTGCGTGGCTGCGGATGGGTATACGT 2457
|||||||||| | |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2405 TTTGCCCACTTTTGAAGGGAGTAATGAACGAGCCGTGCGTGGCTGCGGATGGGTACACGT 2464
Query 2458 ACGATCGGGAAGCTATAGAGGAATGGCTGAGAGAGAATGATACTTCACCAGTGACGAACC 2517
|||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||||| |
Sbjct 2465 ACGATCGGGAAGCTATAGAGGAATGGCTGAGACAGAAAGATACATCACCGGTGACGAATC 2524
Query 2518 TTCCATTGCCTAACAAGAACCTTCTTGCTAATTACACTCTTTACTCAGCAATCATGGAGT 2577
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2525 TTCCATTGCCTAACAAGAACCTTATTGCTAATTACACTCTTTACTCAGCAATCATGGAGT 2584
Query 2578 GGAAATCTAATAAAC 2592
|||||||||||||||
Sbjct 2585 GGAAATCTAATAAAC 2599
> AT2G24370.1 | Symbols: | Protein kinase protein with adenine
nucleotide alpha hydrolases-like domain | chr2:10369979-10373063
REVERSE LENGTH=2367
Length=2367
Score = 86.1 bits (46), Expect = 2e-15
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1882 TTCACCGTGATCTCAAACCAGGAAACATCTTGCTTGACCACAACTTCGTCAGCAA 1936
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1796 TTCACCGTGATCTCAAACCAGGAAACATCTTGCTAGACCGTAACTTCGTCAGCAA 1850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129982549313
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5