BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497410
Length=1842
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45900.1 | Symbols: | Phosphatidylinositol N-acetyglucosami... 1319 0.0
> AT2G45900.1 | Symbols: | Phosphatidylinositol N-acetyglucosaminlytransferase
subunit P-related | chr2:18886069-18888674
REVERSE LENGTH=2163
Length=2163
Score = 1319 bits (714), Expect = 0.0
Identities = 950/1055 (90%), Gaps = 52/1055 (5%)
Strand=Plus/Plus
Query 53 ATGGTGGATCTAACCAGAAGCTTTTGATGGATAAGAAACGTGGAAGCAA-ACG-A--ATC 108
||||||||||||||||||||||||||||||||||||||||| ||||||| | | | |||
Sbjct 86 ATGGTGGATCTAACCAGAAGCTTTTGATGGATAAGAAACGTCGAAGCAAGA-GAATCATC 144
Query 109 ATAGGTAATAATGGAATGTTTGACACTAAGGTTGAGAAGCAGCTTACTTGTGACTGTGAC 168
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 145 ATAGGTAATAATGGAGTGTTTGAGACTAAGGTTGAGAAGCAGCTTACTTGTGACTGTGAC 204
Query 169 TATGACTGTGAGGAGAGTGAAGCTGATATGCAGAGTGTCAAGAAACTCATAGAAGATGAG 228
| ||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 205 TGTGA---TGAGGAGAGTGAAGCTGAAATGCAGAGTGTCAAGAAACTCATAGAAGCTGAG 261
Query 229 ATTGATGAGAAGACTAAGCAAAAGTGTGAGGCGAGAAACCGAAAGAGGAGAAGTAGGACC 288
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 ATTGATGAGAAGACTACGCAAAAGTGTGAGGCGAGAAACCGAAAGAGGAGAAGTAGGACC 321
Query 289 TGCATCAAAACCAGTGAGGATATCAATGTTTTGATTGTTGGTGATGATGATGAT---CAT 345
|||| ||||| |||||| ||||||||||||||||||| |||||||||||||||| |||
Sbjct 322 TGCAGCAAAATCAGTGAAGATATCAATGTTTTGATTGCTGGTGATGATGATGATGATCAT 381
Query 346 GCAGAGAAAGCAGGTGATCAGTGTCCGAGAATTTCTCAGAATGAAGTGGGTTTGGTAAAT 405
||||||||| ||| | || ||||||||| | ||||||| || ||||||| | ||||||||
Sbjct 382 GCAGAGAAATCAGATAATGAGTGTCCGATAGTTTCTCATAACGAAGTGGATATGGTAAAT 441
Query 406 GATGATTCCGAAGAGAAGTTCAGCGAGTTGATAAAGCGGTTGATAGCTCAAAAGGAAAGT 465
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 GATGATTCCGAAGAGAAGTTCAGCGAGTTGATAAAGCGGTTGATAGCTCAAAAGGAAAGC 501
Query 466 GAGGCAGGGAGCTGCAAGAAGAACATGGTGGATGCATTTCAGGTCTTGGATTCTAAAGAA 525
|||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 502 GAGGTAGAGAGCTGCAAGAAGAACCTGGTGGATGCATTTCAGGTCTTGGATTCTAAAGAA 561
Query 526 GAATCATTCTTGAATATCGGTACGCCAATTTCAAGAGATTCTCAGAGAATCAATGAGCTG 585
|||||||| |||||||||||| |||| ||| ||||||||||||||||||| |||
Sbjct 562 GAATCATT---GAATATCGGTACACCAACTTCGGGAGATTCTCAGAGAATCAAAGAG--- 615
Query 586 ACACAATGTAGACAAACAATTGTAATTTTGAAGCCTGAACCAAATAGCTTGGATGTTGGA 645
|||||| | ||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 616 ACACAA---A--CAA----TTGTAATTTTGAAGCCTGAACCAAATACCTTGGATGTTGGA 666
Query 646 TCATCACCTGGAACACCTTCTACAGACAACAAGACCAAAAATGGGAGGTTCAGTTCTCGC 705
||||| ||||||||||||||||||||||||||| ||||||||| || ||||||||||||
Sbjct 667 TCATCGCCTGGAACACCTTCTACAGACAACAAGGCCAAAAATGAGAAATTCAGTTCTCGC 726
Query 706 TTTATTCTCAGTAGAATCAGAAGAAGACTAAAGTTTGCTGTTGGAAAGAATCCATGCAAT 765
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 727 TTTAGTCTCAGTAGAATCAGAAGAAGACTAAAGTTTGCGGTTGGAAAGAATCCATGCAAT 786
Query 766 GCTCAACAGGACTCTGATCCTGATCC--A-G-A--TGCATTGTCGTCTAACATGAGTCAA 819
|||||||| ||||||||||||||||| | | | |||||||||||||| ||||||||||
Sbjct 787 GCTCAACATGACTCTGATCCTGATCCTGATGCAGATGCATTGTCGTCTAGCATGAGTCAA 846
Query 820 AACTGTTGTTTGGGAGAAGCGATAGAGACTAATCCCGGGAAGGGTGTTTCGGATGGAGAA 879
||||||||||||||||||| ||||||||| ||||||||| | |||||||||||
Sbjct 847 AACTGTTGTTTGGGAGAAGAGATAGAGACCAATCCCGGG-----T----CGGATGGAGAA 897
Query 880 A-CATTGCCTGACATTGCTTCAAAACGTGAGGCTAATAAGGAGGACACTATCCATGAAAG 938
| | ||||||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||
Sbjct 898 ATC-TTGCCTGACATTGCTTCAAAAGGTGAGGCTAATAAAGAGGATACTTTCCATGAAAG 956
Query 939 TGAA---GATTCCAAGAAGAGTATGTGTGGTATATACATTGCCGCCAAGAAACACCTGTC 995
|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 957 TGAAAAAGATTCCAAGAAGAGTATGTGTGGCATATACATTGCTGCCAAGAAACACCTGTC 1016
Query 996 TGAAATGCTTGCAGAAAGAGAC---GATGCTGA-TTCACCGGATAAAGAAGTACCAAGAA 1051
|||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||
Sbjct 1017 TGAAATGCTTGCAGAAGGAGACATAGATGCTGACTT-ACCGGATAAAGAAGTACCAAGAA 1075
Query 1052 TTCTTGGGAAGATTCTTTCTCCCCCTGACT-CTTC 1085
| ||||||||||||||| ||| |||||| | ||||
Sbjct 1076 TCCTTGGGAAGATTCTTGCTCTCCCTGAGTTCTTC 1110
Score = 909 bits (492), Expect = 0.0
Identities = 545/571 (95%), Gaps = 2/571 (0%)
Strand=Plus/Plus
Query 1080 CTCTTCCATTATCCAACAAGATGCATATGTTGATGAGGATGAGCAGAAGCAACTCTTGGA 1139
|||||||||||||||||||||||||||| |||||||||||||||| || ||||| |||||
Sbjct 1326 CTCTTCCATTATCCAACAAGATGCATATATTGATGAGGATGAGCACAAACAACTTTTGGA 1385
Query 1140 AAAGGAAGGACTCGACGAGGGGCAATTACCGTGTTCTCCACCAAACTCTTCAATGAGAAT 1199
|||||||| |||| | ||||| |||| ||||||||||||||||||||||||| |||||||
Sbjct 1386 AAAGGAAGTACTCAAAGAGGGACAATCACCGTGTTCTCCACCAAACTCTTCAGTGAGAAT 1445
Query 1200 GTCTGAATGCCAAGAAAATACCACAGATGT-TCTGGGAAAGTCAAGTCCTGTATCTGTGC 1258
|||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 1446 GTCTGAATGCCAAGAAAACACCACAGATGTAT-TGGGAAAGTCAAGTCCTGTATCTGTGC 1504
Query 1259 TTGAGCCTCTCTTTACAGATGATGACACTAGTCCAAACAGCTCCAGGTTCTCTTCAGCCG 1318
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 TTGAGCCTTTCTTTACAGATGATGACACTAGTCCAAACAGCTCCAGGTTCTCTTCAGCCG 1564
Query 1319 AAGTGCGGATGCAACCACTGTGCATAAGATTCGACGAAGCTGATTCTCCAAGACCGGAGA 1378
|| ||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||
Sbjct 1565 AAATGCGGATGCAACCACTGTGCATAAGATTCGACGAACCTGATTTTCCAGGACCGGAGA 1624
Query 1379 AAGACAATGATGCCAAAACTAGAATGGATGACAAAGAATTGGCACTTGAATACATTCAAG 1438
|||||||||||| |||||| |||||||| ||||| ||| |||||||||||||||||||||
Sbjct 1625 AAGACAATGATGTCAAAACAAGAATGGACGACAAGGAACTGGCACTTGAATACATTCAAG 1684
Query 1439 CCGTGGTGAAATCCTCAGAGTTGAACTGGGAAGAGCTTTTGGCGAGATCTTTTTATTCGG 1498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 CCGTGGTGAAATCATCAGAGTTGAACTGGGAAGAGCTTTTGGCGAGATCTTTTTATTCGG 1744
Query 1499 AGAAGATTCTTGAGCAGGCTCTAATGGATGACATAGATTTCTGTTCGACAAATCTATGCA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1745 AGAAGATTCTTGAGCAGGCTCTAATGGATGACATAGATTTCTGTTCGACAAATCTCTGCA 1804
Query 1559 GCGATAAGAAACTCCTTTTTGACTGTATCAATGAAGTTCTTATGGAGTTTTGTGGACATG 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1805 GCGATAAGAAACTCCTTTTTGACTGTATCAATGAAGTTCTTATGGAGTTTTGTGGACATG 1864
Query 1619 GCCCTTGGATTTCATTCGTCAAACCTTCAAT 1649
|||||||||||||||||||||||||| ||||
Sbjct 1865 GCCCTTGGATTTCATTCGTCAAACCTGCAAT 1895
Score = 211 bits (114), Expect = 2e-53
Identities = 127/133 (95%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 1652 GAAGAAGTTTACTGGCATCTCTTACCTTTGACTTCTCCTCACACACTAGACCAGATAGTG 1711
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1939 GAAGAAGTTTACTGGCATCTCTTACCTTTGCCATCTCCTCACACACTAGACCAGATAGTG 1998
Query 1712 CAGAAAGAC-TGGCTAGGACTGGAAACTGGATGGA-CTCCGCTTTGATATTGGTTGCATC 1769
| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1999 CGGAAAGACCTGGCTAGGACTGGAAACTGGATGGATCTCCGCTTTGATATTGGTTGCATC 2058
Query 1770 GGTTCTGAAACAG 1782
| |||||||||||
Sbjct 2059 GTTTCTGAAACAG 2071
Score = 86.1 bits (46), Expect = 1e-15
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAAGAGATTTGTAGAAGACATCTTTCAAGAGAAGGGATAGGAT 49
|||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGAGAAAGAGATTTGTAGAAGACATCTTTCAAGAGAAGGGCTAGGAT 49
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91164189720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5