BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497411
Length=1522
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45890.1 | Symbols: ATROPGEF4, ROPGEF4, RHS11 | RHO guanyl-n... 2338 0.0
> AT2G45890.1 | Symbols: ATROPGEF4, ROPGEF4, RHS11 | RHO guanyl-nucleotide
exchange factor 4 | chr2:18883473-18885566 FORWARD
LENGTH=1585
Length=1585
Score = 2338 bits (1266), Expect = 0.0
Identities = 1377/1430 (96%), Gaps = 9/1430 (1%)
Strand=Plus/Plus
Query 40 AATCGTGATGGAGAGTTCATT-GAATTCCGAACAAAACGAGGGAACTCCGACGAGCTCTG 98
|||||||||||||||||| || ||||||||| ||||| ||||||||||||||||||||||
Sbjct 61 AATCGTGATGGAGAGTTC-TTCGAATTCCGACCAAAATGAGGGAACTCCGACGAGCTCTG 119
Query 99 TTTCTTCGCCATATCGGAGAACATACTCTGATATCTCCGGATTATCCCACCGGTTCGACG 158
|||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 120 TTTCTTCGCCGTACCGGAGAACATACTCAGATATCTCCGGATTATCTCACCGGTTCGACG 179
Query 159 TTCAGAATTTTTATAACCGGCCGTCGAACACTAACGCTGTTGTCTTGAGTGGCCATGAAG 218
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 TTCAGAGCTTTTATAACCGGCCGTCAAACACTAACGCTGTTGTCTTGAGTGGCCATGAAG 239
Query 219 AAGATGTCTCCGAAGACGCCGTGGAACCAAAAGATGATGTCGTC-A--A--T-GACGGAG 272
||||||||||||||||||||| |||||||||||||||||||||| | | | ||||||
Sbjct 240 AAGATGTCTCCGAAGACGCCGAGGAACCAAAAGATGATGTCGTCAACGACGTCCACGGAG 299
Query 273 ATGGAGACGAGGAAGACAGCGACATTGATTCTGCAGAAGATGCAGAGCTAGAGATGATGA 332
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATGGAGACGAAGAAGACAGCGACATTGATTCTGCAGAAGATGCAGAGCTAGAGATGATGA 359
Query 333 GAGAAAGATTTGCGAAGCTATTGCTTGGTGAAGACATGTCAGGAAGTGGGAAAGGAGTTT 392
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGGAAAGATTTGCGAAGCTGTTGCTTGGTGAAGACATGTCAGGAAGTGGGAAAGGAGTTT 419
Query 393 GTACCGCTGTTACTGTCTCAAACTCCATAACCAATCTCTATGCGACTGTGTTTGGACAAA 452
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 GTACTGCTGTTACTGTGTCAAACTCCATAACCAATCTCTATGCGACTGTGTTTGGACAGA 479
Query 453 GTTTAAGGTTACAACCATTGAGTACAGAGAAGAAAGAGTTATGGAAGCGAGAGATGAATT 512
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 480 GTTTAAGGTTACAACCATTGAGTACAGAGAAGAAAGACTTATGGAAACGAGAGATGAATT 539
Query 513 GTTTCATGTCTATTTGTGATTACATTGTCGAAGTTATTCCAAGATCTCTTGGTACTAACG 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTTTCATGTCTATTTGTGATTACATTGTCGAAGTTATTCCAAGATCTCTTGGTACTAACG 599
Query 573 TTGAGATAACAGAAACAAAGCTAAGATCTGATATTCTCATGAGTCTTCCTGCTTTGAGAA 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGAGATAACAGAAACAAAGCTAAGATCTGATATTCTCATGAGTCTTCCTGCTTTGAGAA 659
Query 633 AACTCGATAATATGCTAATGGAAATATTGGATAGTTTTACGGAGAACGAGTTCTGGTACG 692
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 660 AACTCGATAACATGCTAATGGAAATATTGGATAGTTTTACGGAAAACGAGTTCTGGTATG 719
Query 693 TTGAAAGAGGAAGCTCATCGATGAACTCGAGCGGTGGTGGCAGAGATTCAGGAACGTTTA 752
||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||
Sbjct 720 TTGAAAGAGGAAGCTCATCGATGAACTCGGGTGGTGGTGGTAGAGATTCAGGAACGTTTA 779
Query 753 GGAAAGTGGTGGTTCAACGGAAAGACGAGAAGTGGTGGCTTCCGGTGCCATGTGTTCCTG 812
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 780 GGAAAGTGGTGGTTCAACGGAAAGACGAGAAATGGTGGCTTCCGGTGCCATGTGTTCCTG 839
Query 813 CTGAAGGTTTATCGGAAGAAGAACGAAAGAATTTGCGTCACAAACGTGATTGTGCCAGTC 872
||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 840 CTGAAGGTTTATCTGAAGAAGAACGAAAGCATTTGCGTCACAAACGCGATTGTGCCAGTC 899
Query 873 AGATACATAAAGCAGCATTGGCCATTAACGATTCCACTCTTAATGACATGGATATTCCTG 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGATACATAAAGCAGCATTGGCCATTAACGATTCCACTCTTAATGACATGGATATTCCTG 959
Query 933 ATTCTTATCTCACCACTCTTCCAAAGAGTGGGAAAGCAAGTGTAGGAGACGTGATATACA 992
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 960 ATTCTTACCTCACCACTCTTCCAAAGAGTGGGAAAGCAAGTGTAGGAGACGTGATTTACA 1019
Query 993 AGCAACTGTGCACTGCCGAGAAGTTTTATCCTGACCAGCTTCTCGACATCTTGAAGATAA 1052
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1020 AGCAACTGTGCACAGCCGAGAAGTTTTATCCCGACCAGCTTCTCGACATCTTGAAGATCA 1079
Query 1053 CATCTGAGCATGAGGCGCTTGAGCTCGCCGACAAAGTTGAGGCTTCACTAGTTACGTGGA 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CATCTGAGCATGAGGCGCTTGAGCTCGCCGACAAAGTTGAGGCTTCACTAGTTACGTGGA 1139
Query 1113 GGCGTAAGACTGGAGGATTGACTCACTCCAAGTCCTCATGGGACATGATGAAAGATATCG 1172
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1140 GGCGTAAGACTGGAGGATTGACTCACTCTAAGTCCTCATGGGACATGATGAAAGATATCA 1199
Query 1173 GTGGCGATGCAGATCGTGGCAATGACAAGAACCACATTCTTGCGGCTCGAGCAAGGAGCT 1232
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1200 GTGGCGATGCAGATCGTGGCAATGACAAGAACCACATACTTGCGGCTCGAGCCAGGAGCT 1259
Query 1233 TACTTTTCTGTCTGAAGCAGAGATACCCTGAACTTTCTCAGACCTCACTTGACATCTGCA 1292
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TACTCTTCTGTCTGAAACAGAGATACCCTGAACTTTCTCAGACCTCACTTGACATCTGCA 1319
Query 1293 AGATTCAGTTTAACCGAGATGTTGGAAAGGCGGTATTGGAGAGCTATTCGAGGGTTTTAG 1352
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1320 AGATTCAGTTTAACCGAGATGTGGGAAAGGCGGTATTGGAGAGCTATTCAAGGGTTTTAG 1379
Query 1353 AAGGTTTGGCTTATAATGTTGTGTCGTGGATTGATGATGTTCTTTACGTCGACAGAACAG 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AAGGTTTGGCTTATAATGTTGTGTCGTGGATTGATGATGTTCTTTACGTCGACAGAACAG 1439
Query 1413 TGAGGAACAGAGAGGATTAGGGTTTT-CATACTGAGTTTTTTCTTTTGAG 1461
|||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1440 TGAGAAACAGAGATGATTAGGGTTTTTCATACTGAGTTTTTTCTTTTGAG 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75100015320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5