BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497414
Length=1805
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07180.1 | Symbols: | GPI transamidase component PIG-S-rela... 2791 0.0
> AT3G07180.1 | Symbols: | GPI transamidase component PIG-S-related
| chr3:2282233-2285513 REVERSE LENGTH=2060
Length=2060
Score = 2791 bits (1511), Expect = 0.0
Identities = 1670/1749 (95%), Gaps = 2/1749 (0%)
Strand=Plus/Plus
Query 58 CGTCCCTTCATCACCACCTCTGTGCTCTTCTCATTCCTTTTAGGTGTGCCATTTCTGTGG 117
|||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 126 CGTCTCTTCATCACCAGCTCTGTACTCTTTTCATTCCTTTTAGGTGTGCCATTTCTGTGG 185
Query 118 AAGTCAGTGGAAATATATCGCTCTCCGTTACCGTTCCACGACATCGATTCGCTTTCCGAT 177
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 186 AAGTCAGTGGAAATATATCGCTCTCCGTTACCGTTCCACGACATCGATTCTCTCTCCGAT 245
Query 178 CAAATTGAGTCTACTCCTTTGCGTTTCCCTTGCAATTTCCACGCTGTATTCGTCGGTTTC 237
||| ||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 246 CAACTTGAGTCGACCCCTTTGCGTTTCCCTTGCAATTTCCACGCTGTTTTCGTCGGTTTT 305
Query 238 CGATCGACGGATCCGGATAACTTGCGATCTCAGATACAAGATGGTATAAATCAGTTAACT 297
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 306 CGATCGACGGATCCGGATAACTTACGATCTCAGATACAAGATGGTATAAATCAGTTAACT 365
Query 298 CATCAAAATTCACAATGTGGTTCCTGCAATTTTTCCCTCTCTGTCACCGTTCAAAACCGA 357
||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 366 CATCAAAGTTCACAATGTGGTTCTTGTGATTTTTCCCTCTCTGTCACCGTTCAAAACCGA 425
Query 358 GATGACCAGTGCTCTGAAACACTTGCGCACAGTTCTACCACGTGCTCATACCGTTGTGGA 417
|| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 426 GAAGACCAGTGCTCTGATACACTTGCGCATAGTTCTACCACGTGCTCTTACCGTTGTGGA 485
Query 418 GTGATCAAAAGAAATGTTTTTGGTGTTGGAGTGGATGATACAGTGGATGAGTCACTGAAT 477
|||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 486 GTGATCAAAAGAAATGGTTTTAGTGTTGGATTGGATGATACAGTGGATGAGTCACTGAAT 545
Query 478 GATGTGTTCAGTGGCTGTTCTGAGGAGAGTGGGAAAATGTACAGTGTTGTTGTGGTGAAC 537
|||||||| ||||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct 546 GATGTGTTTAGTGGCTGTTCTGAGAACAGTGGGAAAATGTACAGTGTTGTCGTGGTGAAT 605
Query 538 AAAGAGAATGCCAATGGTAAAGATGAGGTAAAAGCTGTGGTGGGCAAGGGAAGGCATGCG 597
|||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||
Sbjct 606 AAAGAGAATGCCAATGGTGGAGATGAGGTAAAAGCTGTGGTGGGGAAGCGAAGGCATGCG 665
Query 598 TGGATTGTGGGGAATGGATTAGAAGAAAGATATGGTGACATGGTGGCTAGAGTTTCTGAG 657
||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 666 TGGATTGTGGGCAATGGATTAGAAGAGAGGTATGGTGACATTGTGGCTAGAGTTTCTGAG 725
Query 658 ATTTTCGTTAAGATGTTTATGAATGGTGGAAGAGAAGAAGACTCAATTCAAGGAGAGTTT 717
||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 726 ATTTTCGTTCAGGTGTTTATGAATGGTGGAAGAGAAGAAGACTCAATTCAGGGAGAGTTT 785
Query 718 ATGCCTGTGGGATCAGATGGGAGGATTGTTCTTTCGTTCAGTCTATTAAATTCTAATCCA 777
|||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 786 ATGCCTGTGGGATCAGATGGGAAGATTGTTCTTTCGTTCAGTCTTTTAAATTCCAATCCA 845
Query 778 CGTGATTGGGTCTACGATTGGGACTTTCAAAGGATAGACGAGGCATTGTTGGCTCCCGTG 837
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 846 CGTGATTGGGTCTACGATTGGGACTTTCAGAGGATAGATGAGGCATTGTTGGCTCCGGTG 905
Query 838 ACTAAAGCCTTAGCACCTATAGCTAATATAAGTGTTGAAAGTCAGGTTTTGTATCATACA 897
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 906 ACTAAGGCCTTAGCACCTATAGCTAATATAACTGTTGAAAGTCAGGTTTTGTATCATACA 965
Query 898 CCGAAGTCTTCGTTTTCATCTTGGGATAAAAAACTTCAGAGCTACATCTTTAGGACCAGT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 CCGAAGTCTTCGTTTTCATCTTGGGATAAAAAACTTCAGAGCTACATCTTTAGGACCAGT 1025
Query 958 GCTCTTCCCTTTTTCGTGAATTCGAACGAATGGCACTTGGATACTTCTGCTGGAGCCAGT 1017
| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 GATCTTCCGTTTTTTGTGAATTCGAACGAATGGCACTTGGATACTTCTGCTGGAGCCAGT 1085
Query 1018 GGACGGTCCAAAATACTGCAATTTGTGGTATATATTCCGTCCGGAAAAGAATGCCCTCTT 1077
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1086 GGACGGTCCAAAATACTGCAATTTGTGGTATATATTCCATCCGGAAAAGAATGCCCTCTT 1145
Query 1078 CTTTTGCAGTTGCCAAATGGGGAGATATCTAAAACAAATGGCTTCATATCTCCGATATGG 1137
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1146 CTTTTGCAGTTGCCAAATGTGGAGATATCTAAAACAAATGGCTTCATATCTCCGATGTGG 1205
Query 1138 GGCGGTGTGATTGTGTGGAACCCGGGAAATTGTGACAAGGACTCTGAAAGCTCAAGTAGG 1197
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1206 GGTGGTGTGATTGTGTGGAACCCGGGAAATTGTGACAAGGACTCTGAAAGCCCAAGTAGG 1265
Query 1198 AACACGATATCGCCTCAGGATCTCGAGCAAATAGTTGAAATTTTCTTGGGACAATTCCGA 1257
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1266 AACACGATATCGCTTCAGGATCTCGAGCAAATAGTCGAAATTTTCTTGGGACAATTCCGA 1325
Query 1258 CAACTATTTGGCTTTAAGTCTGAAGCCTTTTATACCAGTGGATTGGGCACTTACAAGATT 1317
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1326 CAACTATTTGGCTTTAAGTCTGAAGCCAAATATACCACTGGATTGGGCACTTACAAGATT 1385
Query 1318 CTACCTAGTGACAGAGGCTTTACAGAGTGGGAATTGGATGTCTTGTCAAC-GAAGCACAC 1376
|| ||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1386 TTAACTAGTGAAAGAGGCTTTACAGAGTGGGAATTGGATGTCTTGTC-ACGGAAGCACAC 1444
Query 1377 ATGCTTCAATCTCCATTCTTGTTCAACAACCCTCGGTTCTCTCTCTAGATTGGTTCGGTC 1436
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 TTGCTTCAATCTCCATTCTTGTTCAACAACCCTCGGTTCTCTCTCTAGATTGGTTCGGTC 1504
Query 1437 ACTCCCCAGGATGATTATCAAGGATGAAATTGGAGAACAAGTGAAATATTCTCTGAAAGC 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 ACTCCCCAGGATGATTATCAAGGATGAAATTGGAGAACAAGTGAAATATTCTCTGAAAGC 1564
Query 1497 AGCAAAGTTGGCTCAGTCTAATGCTTCTTTGGGAGAATACAGTTCTTCAGCCAGTTCATC 1556
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1565 AGCAAAGTTGGCTCAGTCTAATGCTTCTTTGGGAGGATACAGTTCTTCAGCCAGTTCATC 1624
Query 1557 AAGAGAAGCAAGGTCTCTAGCCGAGAATGCCTTCTTCCATCCATCTATCATGTCCGTCAG 1616
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1625 AAGAGAAGCAAGGTCTTTAGCCGAGAATGCCTTCTTCCATCCATCCATCATGTCCGTCAG 1684
Query 1617 CTACTTCTCTTCTGAACATTGCTTTGCAGTGTACTCGCCGTTTTTCCTGCCCGTGGCAGG 1676
||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| |||
Sbjct 1685 CTACTTCTCTTATGAACATTGCTTTGCAGTGTACTCACCGTTTTTCCTGCCGGTGGTAGG 1744
Query 1677 ACACGTTGTCCTTGCAGCACTACGAGAATGGAAGAGATACAAACAAGAGAAGGCAAAGTA 1736
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 TCACGTTGTCCTTGCAGCAGTACGAGAATGGAAGAGATACAAACAAGAGAAGGCAAAGTA 1804
Query 1737 CTTGACATGGCTAACCAGAAAGAAGACGGCCTAGGACTCTTTAGCATATTACATATTCTC 1796
|||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||
Sbjct 1805 CTTGACATGGCTAACCAGAAAGAAGACGACCTAGGACTCTTTAGCATACTACAGATTCTC 1864
Query 1797 TGTAACTTT 1805
|||||||||
Sbjct 1865 TGTAACTTT 1873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89306769555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5