BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497417
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43650.1 | Symbols: BHLH92 | basic helix-loop-helix (bHLH) D... 1099 0.0
> AT5G43650.1 | Symbols: BHLH92 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:17533193-17534796 REVERSE
LENGTH=899
Length=899
Score = 1099 bits (595), Expect = 0.0
Identities = 759/836 (91%), Gaps = 19/836 (2%)
Strand=Plus/Plus
Query 1 CACAACTCAAAATTGTCAAACAGACTAAGAGAGAAAAGATGGATAACTTCTTTCTAGATT 60
||||| |||| ||||||||||| |||||||||| ||||||||||||||| ||||||| ||
Sbjct 2 CACAAATCAAGATTGTCAAACACACTAAGAGAG-AAAGATGGATAACTTTTTTCTAGGTT 60
Query 61 TG-GTTTGTCAAGAAGACGACAACTTCTGGGATCTGATC--GG-AGACATCTCCGGTAAC 116
|| | |||||||||||| |||||||||||||||| ||| || ||||||| |||
Sbjct 61 TGAG-TTGTCAAGAAGAAAACAACTTCTGGGATCTAATCGTGGCCGACATCT-CGG---- 114
Query 117 GATGACAAAAGCGTCAGTGTGCCAAACAGAAGCGCCTTTAGGTCATACGTGAAGGGCACA 176
| ||| | |||||||||||| || | ||||||||||||||||||||| |||||| |||
Sbjct 115 G-TGATAGAAGCGTCAGTGTACCTATCAGAAGCGCCTTTAGGTCATATATGAAGGACACG 173
Query 177 GAACAT-TTGTTGATGTCGCCGGGGATAACTTCATCGAAGGTGAACGTGAAGAAGAGAAT 235
|||| | | ||||||||||| |||| |||| ||||||||||||||||||||||||||
Sbjct 174 GAAC-TGAGGATGATGTCGCCGAAGATATCTTCTTCGAAGGTGAACGTGAAGAAGAGAAT 232
Query 236 GGTGAATCTTCTAAGAAAGAATTGGGAGGAGAAGAAAAATGCGGTGGCGCCGGAAAAGGA 295
||| |||||||| ||||||||||||||||||||||||||| ||||||| || || |||||
Sbjct 233 GGTCAATCTTCTGAGAAAGAATTGGGAGGAGAAGAAAAATACGGTGGCTCCAGAGAAGGA 292
Query 296 AAGATGCCGACGACATATGTTGAAAGAAAGAACGAGAAGAGAGAAACAAAAACAGAATTA 355
|||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 293 AAGAAGCCGGCGACATATGTTGAAAGAAAGGACGAGAAGAGAGAAACAAAAACAGAGTTA 352
Query 356 CTTAGCTCTCCACTCTCTACTACCATTTGCCACTAAGAATGACAAAAATTCGATTGTTGA 415
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 353 CTTAGCTCTCCATTCTCTACTACCATTTGCCACTAAGAATGACAAAAATTCGATTGTCGA 412
Query 416 AAAAGCCGTGGATGAGATTGGGAAACTACAAAGATTAAAGAAAGAACTAGAGAAAAGAAT 475
|||||||||||||||||||| |||| |||||||||||||||||||||||| || ||||||
Sbjct 413 AAAAGCCGTGGATGAGATTGCGAAATTACAAAGATTAAAGAAAGAACTAGTGAGAAGAAT 472
Query 476 TAAAGTGATTGAGGAAAAATCAGCAAAGGATGATCATGAT-AATATGAGTGAAACAAAAG 534
|||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| |
Sbjct 473 TAAAGTGATTGAGGAAAAATCAGCAAAGGATGGTCATGATGAA-ATGAGTGAAACAAAGG 531
Query 535 TTAGGTTTAATCTACAAGAACCTTTGTCTGGACTCGACTCAATGCTTGAAGTTCTTCATT 594
||||| |||||||| ||||||||||||||||||| || ||||||||||||| |||||||
Sbjct 532 TTAGGGTTAATCTAAAAGAACCTTTGTCTGGACTAGATTCAATGCTTGAAGCGCTTCATT 591
Query 595 ATCTTAAATCAATGGGAACAAAACTTAAAACAGTCCACGCCAATTTCTCTCCTCAAGAGT 654
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 592 ATCTTAAATCAATGGGAACAAAACTGAAAACAGTCCATGCCAATTTCTCTCCTCAAGAGT 651
Query 655 TTTCTGCGACCATGAACATCGAGACTCAGATTAGAGGAGAAGAGGTTGAAAAGAGAGTGG 714
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 652 TTTCTGCGACCATGACCATCGAGACTCAGATTAGAGGAGAGGAGGTTGAAAAGAGAGTGG 711
Query 715 AGAGAAGACTCCAGGAAAATGAATGGAAACTTCTCTTTCTCCCAGAAGCTTCCTGTTACA 774
| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 712 AAAGAAGACTCCAGGAAACTGAATGGAAACTTCTCTTTCTCCCAGAAGCTTCCTTTTACA 771
Query 775 AAGACTA--A-TTGTGTTGACTTTCTGTCATTAATTTTCTTTTGTTTTTAAATTTG 827
||||||| | || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 772 AAGACTACTAATTCTGTTGACTTTCTGTCATTAATTTTCTTTTGTATTTAAATTTG 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5