BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497418
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43640.1 | Symbols: | Ribosomal protein S19 family protein ... 444 4e-124
AT5G09500.1 | Symbols: | Ribosomal protein S19 family protein ... 370 6e-102
AT5G09510.1 | Symbols: | Ribosomal protein S19 family protein ... 357 5e-98
AT1G33850.1 | Symbols: | Ribosomal protein S19 family protein ... 309 1e-83
AT5G09490.1 | Symbols: | Ribosomal protein S19 family protein ... 135 2e-31
> AT5G43640.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:17531302-17532370 FORWARD LENGTH=450
Length=450
Score = 444 bits (240), Expect = 4e-124
Identities = 270/285 (95%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 11 TGGAACCAGAGGTTGCTGCGGCTGGAATTATGAAAAAGAGAACGTTCAAGAAGTTTTCTT 70
||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct 2 TGGAACCAGAGGTTGTTGCGGCTGGAATTGTGAAAAAGAGAACCTTCAAAAAGTTTTCTT 61
Query 71 TCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCTTGTCAAGCATT 130
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||
Sbjct 62 TCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCATCGAAGATCTTGTCAAACATT 121
Query 131 TCAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAACCTATGGCTTTGA 190
||||| | ||| ||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 122 TCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTGACCAGAAAACCTATGGCTTTGA 181
Query 191 TCAAGAAATTGCGCAAAGCGAAAATAGAGGCACCAGCTGGTGAGAAGCCAGCAGCAGTGA 250
| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 182 TTAAGAAATTGCGCAAAGCGAAAATGGAGGCACCAGCTGGTGAGAAGCCAGCATCAGTGA 241
Query 251 GAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAA 295
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 GAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAA 286
Score = 198 bits (107), Expect = 3e-50
Identities = 119/125 (95%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 296 TCGAGATCAAACCGGAGATGATTGGACATTACTTGGCTGAATTCTCAATCTCCTACAAAC 355
|||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 326 TCGAGATCAAGCCGGAGATGATTGGACATTACTTGGCTGAGTTCTCAATCTCATACAAAC 385
Query 356 CGGTTAAGCATGGTAGGCCTGGTGTTGGTGCTACCAATTCCTCCAGGTTTATTCCTCTCA 415
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 386 CGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTACCAATTCCTCCAGGTTTATCCCTCTCA 445
Query 416 AGTGA 420
|||||
Sbjct 446 AGTGA 450
> AT5G09500.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:2953913-2954918 REVERSE LENGTH=652
Length=652
Score = 370 bits (200), Expect = 6e-102
Identities = 256/284 (90%), Gaps = 0/284 (0%)
Strand=Plus/Plus
Query 12 GGAACCAGAGGTTGCTGCGGCTGGAATTATGAAAAAGAGAACGTTCAAGAAGTTTTCTTT 71
||| ||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||
Sbjct 74 GGATCCAGAGGTTGCTGCGGCTGGAATCGTAAAAAAGAGAACGTTCAAAAAGTTTTCCTT 133
Query 72 CAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCTTGTCAAGCATTT 131
||||||||||||||| ||||| |||||||||||||| || |||||||||||||||| |||
Sbjct 134 CAGAGGAGTCGATCTTGATGCTCTTCTCGACATGTCTACTGATGATCTTGTCAAGCTTTT 193
Query 132 CAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAACCTATGGCTTTGAT 191
| | | ||| | || ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 194 CCCTTCCCGTATCCGTAGAAGGTTCTCTAGAGGATTGACGAGGAAGCCTATGGCTTTGAT 253
Query 192 CAAGAAATTGCGCAAAGCGAAAATAGAGGCACCAGCTGGTGAGAAGCCAGCAGCAGTGAG 251
||||||| |||| ||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 254 CAAGAAACTGCGGAAAGCGAAAATTGAAGCACCAGCTGGAGAGAAGCCAGCAGCAGTGAG 313
Query 252 AACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAA 295
||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 314 AACCCACCTAAGGAACATGATCATTGTGCCTGAAATGATTGGAA 357
Score = 182 bits (98), Expect = 3e-45
Identities = 116/125 (93%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 296 TCGAGATCAAACCGGAGATGATTGGACATTACTTGGCTGAATTCTCAATCTCCTACAAAC 355
||||||||||||| |||||||||||||||||||||||||| || |||||||| || || |
Sbjct 397 TCGAGATCAAACCAGAGATGATTGGACATTACTTGGCTGAGTTTTCAATCTCATATAAGC 456
Query 356 CGGTTAAGCATGGTAGGCCTGGTGTTGGTGCTACCAATTCCTCCAGGTTTATTCCTCTCA 415
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 457 CTGTTAAGCATGGTAGGCCTGGTGTTGGTGCTACCAATTCCTCCAGATTTATCCCTCTCA 516
Query 416 AGTGA 420
|||||
Sbjct 517 AGTGA 521
> AT5G09510.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:2955113-2956673 REVERSE LENGTH=1163
Length=1163
Score = 357 bits (193), Expect = 5e-98
Identities = 264/298 (89%), Gaps = 6/298 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGATGTGGAACCAGAGGTTGCTGCGGCTGGAATTATGAAA-AAGAGAACGTTCAA 59
||||| |||||||||||||||||||| || || ||| || ||| ||||||||||||||
Sbjct 120 ATGGCTGATGTGGAACCAGAGGTTGCAGCAGCAGGAGTT-CCAAAGAAGAGAACGTTCAA 178
Query 60 GAAGTTTTCTTTCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCT 119
||| || | |||| |||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 179 GAAATTCGCCTTCAAAGGAGTCGATCTCGATGCTCTTCTCGACATGTCTACCGATGATCT 238
Query 120 TGTCAAGCAT-TTCAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAA- 177
|||||||| | ||| | | ||| |||||||||||||||||||||||||||| | ||||
Sbjct 239 TGTCAAGC-TCTTCTCTTCCCGTATTCGCAGAAGGTTCTCTAGAGGATTGACGA-GAAAG 296
Query 178 CCTATGGCTTTGATCAAGAAATTGCGCAAAGCGAAAATAGAGGCACCAGCTGGTGAGAAG 237
|||||||||||||| |||||| | ||||| ||||||| ||||||||||||||||||||||
Sbjct 297 CCTATGGCTTTGATTAAGAAACTCCGCAAGGCGAAAAGAGAGGCACCAGCTGGTGAGAAG 356
Query 238 CCAGCAGCAGTGAGAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAA 295
|||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CCAGAACCAGTGAGAACCCACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAA 414
> AT1G33850.1 | Symbols: | Ribosomal protein S19 family protein
| chr1:12287913-12288210 REVERSE LENGTH=213
Length=213
Score = 309 bits (167), Expect = 1e-83
Identities = 190/201 (95%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 11 TGGAACCAGAGGTTGCTGCGGCTGGAATTATGAAAAAGAGAA-CGTTCAAGAAGTTTTCT 69
||||||||||||||| ||||||||||||| |||||||||||| | |||||||||||||||
Sbjct 2 TGGAACCAGAGGTTGTTGCGGCTGGAATTGTGAAAAAGAGAATC-TTCAAGAAGTTTTCT 60
Query 70 TTCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGATGATCTTGTCAAGCAT 129
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 TTCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCACCGAAGATCTTGTCAAACAT 120
Query 130 TTCAGTGCTCGTGTTCGCAGAAGGTTCTCTAGAGGATTGACCAGGAAACCTATGGCTTTG 189
|||||| | ||| ||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 121 TTCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTTACCAGGAAACCTATGGCTTTG 180
Query 190 ATCAAGAAATTGCGCAAAGCG 210
|||||||||||||||||||||
Sbjct 181 ATCAAGAAATTGCGCAAAGCG 201
> AT5G09490.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:2952216-2953245 REVERSE LENGTH=683
Length=683
Score = 135 bits (73), Expect = 2e-31
Identities = 111/129 (86%), Gaps = 4/129 (3%)
Strand=Plus/Plus
Query 294 AATCGAGATCAAACCGGAGATGATTGGACATTAC-TTGGCTGAATTCTCAATCTCCTACA 352
|||||||||||||||||||||||||||||||||| ||| | |||||||||||| | ||||
Sbjct 395 AATCGAGATCAAACCGGAGATGATTGGACATTACCTTG-CGGAATTCTCAATCACTTACA 453
Query 353 AACCGGTTAAGCATGGTAGGCCTGGTGTTGGTGCTAC-CAATTCCTCCAGGTTTATTCCT 411
|||| |||| ||| || | ||| ||| ||||||||| || | |||| |||||||| |||
Sbjct 454 AACCCGTTAGGCACGGCAAGCCCGGTCATGGTGCTACACACT-CCTCTAGGTTTATCCCT 512
Query 412 CTCAAGTGA 420
|||||||||
Sbjct 513 CTCAAGTGA 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19906028604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5