BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497421
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24310.1 | Symbols: MYB305, ATMYB71 | myb domain protein 305... 1114 0.0
> AT3G24310.1 | Symbols: MYB305, ATMYB71 | myb domain protein 305
| chr3:8811131-8812364 REVERSE LENGTH=1049
Length=1049
Score = 1114 bits (603), Expect = 0.0
Identities = 717/769 (93%), Gaps = 19/769 (2%)
Strand=Plus/Plus
Query 5 TTGAGTTACATGCTAAGTGGGGCAATAGGTGGTCCACAATTGCACGTAGTTTACCGGGAA 64
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 288 TTGAGTTACATGCTAAGTGGGGCAATAGGTGGTCCACGATTGCACGTAGTTTACCGGGAA 347
Query 65 GAACAGACAACGAAATCAAGAACTATTGGCGAACCCATTTCAAGAAGAAGACAAAGTCTC 124
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 348 GAACAGACAACGAAATCAAGAACTATTGGCGAACCCATTTCAAGAAGAAGACGAAGTCTC 407
Query 125 CAACTAACAATGCGGAAAAGACGAAGAACCGAATCTTGAAGAGGCAACAATTTCAGCAGC 184
||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 408 CAACTAACAGTGCGGAGAAGACAAAGAACCGAATCTTGAAGAGGCAACAATTTCAGCAGC 467
Query 185 AAAGACAAATGGAGTTGCAGCAAGAACAACAGTTGCTTCAATTCAATCAAATCGACATGA 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 AAAGACAAATGGAGTTGCAGCAAGAACAACAGTTGCTTCAATTCAATCAAATCGACATGA 527
Query 245 AAAAGATCATGTCTTTACTAGACGACGACAACAACAACAATGGTGATAATAATACCTTCA 304
||||||||||||| |||||||| |||| ||||||||||||||| |||| |||||||
Sbjct 528 AAAAGATCATGTCGTTACTAGATGACG---ACAACAACAATGGTG---ATAACACCTTCA 581
Query 305 GCAGTAGCAGTAGCGGCAGCAGCGGTGAAGGTGGTGCGTTCTATGTGCCTCATCAGATCA 364
||||||||||||| ||| | | || |||| || || ||||| |||||||||||||
Sbjct 582 GCAGTAGCAGTAGTGGC-G-A------AA-GTGGAGCATTATATGTACCTCATCAGATCA 632
Query 365 CACATTCAACAACAACTTCTGGTTGTGACCCAAATAGTAACGGGTACTACCCTGTGGTTC 424
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 633 CACATTCAACAACAACTTCTGGTTGTGAACCAAATAGTAACGGGTATTACCCGGTGGTTC 692
Query 425 CGGTGACAATGCCTGAGGCTAACGTGAATGAAGATAACGCTATTTGGGACAATTTATGGA 484
|||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 693 CGGTAACAATACCTGAGGCTAATGTGAATGAAGATAACGCTATTTGGGACGGTTTATGGA 752
Query 485 ATGTGGATTTTGAAGGACAAGGAAGTTTTGGTGGTGCTGCTTGTGCCCCAAGGAAGCAAT 544
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 753 ATCTGGATTTTGAAGGACAAGGAAGTTTTGGTGGCGCTGCTTGTGCCCCAAGGAAGCACT 812
Query 545 ATTTCCAGAACATGGTCATTCCCTTCTATTAACTTGACCTTTTAAATATCTCTTATCTGC 604
||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||||
Sbjct 813 ATTTCCAGAACATGGTCATTCCCTTCTGTTAACTTGACCTTTAAAATATCT-T-ATCTGC 870
Query 605 CGGATAATGAAAGAGAAAAACTTGACCGACAAGTTAGGTCGAGTTTGAGTTTAGTTTGCG 664
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 871 CGGATAATGAAAGAGAAAAACTTGACCGACAACTTAGGTCGAGTTTGAGTTTAGTTTGTG 930
Query 665 GTTTCATCTATTTGAGATTTTTGGTTTAAACATAAATAGTTTTGTTATTGAATTGTGTGT 724
||||||| ||||||||||||||||||| |||||| ||| ||||| ||| |||||||||||
Sbjct 931 GTTTCATTTATTTGAGATTTTTGGTTTTAACATATATAATTTTGGTAT-GAATTGTGTGT 989
Query 725 GATGTAAGAAGCTCATTTGGTTT-ATCATAAAAGAGTGATGTAGTAGAA 772
||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 990 GATGTAAGAAGCTCATTTGGTTTTATCATAAAAGAGTGATGTAGTAGAA 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37524907809
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5