BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497422
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43110.1 | Symbols: | unknown protein; Has 212 Blast hits t... 1338 0.0
> AT2G43110.1 | Symbols: | unknown protein; Has 212 Blast hits
to 211 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa
- 62; Fungi - 91; Plants - 31; Viruses - 0; Other Eukaryotes
- 22 (source: NCBI BLink). | chr2:17922060-17924355 FORWARD
LENGTH=938
Length=938
Score = 1338 bits (724), Expect = 0.0
Identities = 850/909 (94%), Gaps = 15/909 (2%)
Strand=Plus/Plus
Query 1 AAAAACATGGCAACCACAGAGGTAAAACCCTCCGCCGTTAAAAACCCTAAAAGAAATCGA 60
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAAAACATGGCAACTACAGAGCTAAAACCCTCCGCCGTTAAAAACCCTAAAAGAAATCGA 61
Query 61 AGACCATCACATGGTCCGAAGAAAGATCT------GAAGAAG---AAG--T-CTAAAAAG 108
||||||||||||||||||||||||||| | ||||||| ||| | |||| |||
Sbjct 62 AGACCATCACATGGTCCGAAGAAAGATTTGAAGAAGAAGAAGACTAAGATTACTAAGAAG 121
Query 109 ACTAAGAAGTCGAAAGCTCCCACCTTTGATAAGACCATTGAGAAGAGTATAAGAAACGAC 168
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 122 ACTAAGAAGTCGAAAGCTCCCACCTTTGATAAGACCATTGAGAAGAGTAGAAGTAACGAC 181
Query 169 CAGAAAACCGAGAACGAAGATGACGAGCAACTGTATTCGGAACCGGTATCGGCCTCTGAG 228
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 182 CAGAAAACCGACAACGACGAAGACGAGCAACTGTATTCGGAACCGGTATCGGCCTCTGAG 241
Query 229 CAGCTTAGCTACTTCTTGAATCAGCTTGAATCCGCCATTGGTATCAAGGTTTCTTCTTTA 288
||||| | |||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 242 CAGCTCAACTACTTTTTGAATCATCTTGACTCCGCCATTGGTATCAAGGTTTCTTCTTTA 301
Query 289 GAGCTCGAACCCATTAAAGATACGTGTATAGTTGAGTTATCTCAAAGATTGGATCAAGAT 348
||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 302 GAGCTTGAACCCATTAAAGATACGTGTATAGTTGAGTTATCTCAAGGGTTGGATCAAGAT 361
Query 349 GTAAGCAACTTGGGAGAGCATATAAAGCTTTCTTGTGGGTCTTCATGGAGAGAGACTCTT 408
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GTAAGCAACTTGGGAGAACATATAAAGCTTTCTTGTGGGTCTTCATGGAGAGAGACTCTT 421
Query 409 TGTGAAGGAGAGACCCTTGAACGGAATGTTGAACCTGGAAACCCATCTGTTCTTGTTATT 468
|||||||||||| | |||||| |||| |||||||| ||||||||||||||||||||||||
Sbjct 422 TGTGAAGGAGAGTCACTTGAAAGGAAAGTTGAACCGGGAAACCCATCTGTTCTTGTTATT 481
Query 469 AGTTCCTCTGCTCTGAGATCTTTGGAACTTCTAAGGGGTTTGCATTCATTGACTAAGCAT 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 AGTTCCTCTGCTCTGAGATCTTTGGAACTTCTAAGGGGTTTGCATTCATTGACTAAGCAA 541
Query 529 TGTCCAGCAGTGAAGTTGTTCTCAAAGCATTTGAAGGTCGAGGAACAGGTATCTCTGTTG 588
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 542 TGTCCAGCAGTGAAGTTGTTCTCAAAGCATTTGAAGGTTGAGGAACAGGTATCTCTGTTG 601
Query 589 AAGAAACGGGTGAATATTGGGAGCGGCACACCAAACAGAATCAAAAAGCTAATCGACATA 648
||||||||||| ||||||||||| |||||||||||||| |||||||||||| ||||||||
Sbjct 602 AAGAAACGGGTTAATATTGGGAGTGGCACACCAAACAGGATCAAAAAGCTAGTCGACATA 661
Query 649 GAAGCGTTAGGGCTTTCGCGTTTAGATATGATTGTGGTGGACATGCACCCAGATGTCAAG 708
||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 662 GAAGCTTTAGGGCTTTCGCGTTTAGATATGATTGTGATCGACATGCACCCAGATGTCAAG 721
Query 709 GGATTTTCCTTATTCACATTGCCTCAAGTCAGAAATGAGTTTTGGGATTTGTATAAAAAC 768
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 722 GGATTTTCCTTATTCACATTGCCTCAAGTCAGAGATGAGTTTTGGGATTTGTATAAAAAC 781
Query 769 TGCTTCCACCAGAGAGTCTTAGAAGGAAGACTACGTATCTGCATGTATGGTCCGAAGCCA 828
|||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||
Sbjct 782 TGCTTCCACCAGAGAGTCCTAGAAGGAAGACTTCGTATCTGCATGTATGGTCCAAAGCCT 841
Query 829 GCTCCAAACTTAAAGAAGAAGAAAAAGAATTAACTTTGATTGTTTAGTTGTATCAAATTC 888
|||||||| ||||||||||||| ||||| ||||| | || || | |||||||||||||
Sbjct 842 TCTCCAAACCTAAAGAAGAAGAACAAGAAATAACTGT--TTATTAA-TTGTATCAAATTC 898
Query 889 TTAAAATTA 897
|||||||||
Sbjct 899 TTAAAATTA 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43854410331
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5