BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497423
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76980.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1031 0.0
> AT1G76980.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast
hits to 65 proteins in 23 species: Archae - 0; Bacteria
- 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other
Eukaryotes - 5 (source: NCBI BLink). | chr1:28926366-28927339
REVERSE LENGTH=974
Length=974
Score = 1031 bits (558), Expect = 0.0
Identities = 664/712 (93%), Gaps = 19/712 (3%)
Strand=Plus/Plus
Query 1 ATGGCAATCTTT-GATCTTTCGTCGAAATCGTTCAATACCCATTTGAATTTTCCCAGAGC 59
|||||||| ||| ||||||||||||||||| ||| ||| ||||||||||||||| ||| |
Sbjct 98 ATGGCAAT-TTTCGATCTTTCGTCGAAATCATTCGATAGCCATTTGAATTTTCCGAGAAC 156
Query 60 TTTCGATGATCATCCAGATTCCGGCGTCTGTTCGCCTCCTCTGTGGAGAACAAGTCCACC 119
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 157 TTTCGATGATCATTCAGATTCCGGCGTCTGTTCGCCTCCTCTGTGGAGAACGAGTCCACC 216
Query 120 GAAAAGTCCTCCTCACCTGCACAACAATTACCAGAATCTCTCACCTGTTTCGAAGGCTCA 179
|||||||||| |||| || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 217 GAAAAGTCCTGCTCATCTTCACAACAATTACCAGAATCTCTCACCTGTTACGAAGGCTCA 276
Query 180 AGTCATCGCTCGTGGTCAGCGTGAGCTCATGGATATGGTTAGTAAGATGCCCGAGTCGTG 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 277 AGTCATCGCTCGTGGTCAGCGTGAGCTTATGGATATGGTTAGTAAGATGCCCGAGTCGTG 336
Query 240 TTACGAGCTTTCGTTGAAGGATCTCGTTGAGGTTAACACGGAGGAAGAGAAGGAAGGGAA 299
||||||||||||||||||||||||||||||||||||||| || || | ||| | |||
Sbjct 337 TTACGAGCTTTCGTTGAAGGATCTCGTTGAGGTTAACAC---GG-AG-G-AGG-A--GAA 387
Query 300 GGTGTTCGATGAAATGCCTCAGAGA-AATAAAAGACCGAGTAAAGTCGTGAGGAAGACGA 358
||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||
Sbjct 388 GGTGTTCGATGAAATGCCTCAGAGAGAAAAAAAG-CCGAGGAAAGTCGTGAGGAAGACGA 446
Query 359 AGAGTGATAAATGGGTGGATCCGATTCGAAACGGAGGTGTAAATAACAGTGGGTTTCTTC 418
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 447 AGAGTGATAAATGGGTGGATCCGATTCGAAACGGAGGTGTTAATAATAGTGGGTTTCTTC 506
Query 419 TGAAATTGGTGTTTCCTGTTAGCTTGGGTGCTAAGAAAAAGACGAA---GAAGAAAGATG 475
||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 507 TGAAACTGGTGTTTCCTGTTAGCTTGGGTGCTAAGAAAAAGACTAATAAGAAGAAAGATA 566
Query 476 ATGATGAAGAATATGATTCTTCTGTGACAAGTAAAAAGTCTTGGATCTCTTCTCCAAGAC 535
||||||| || | |||||||||||||||||||||| ||||||||| |||||||| ||||
Sbjct 567 ATGATGATGA-T--GATTCTTCTGTGACAAGTAAAAGGTCTTGGATTTCTTCTCCTAGAC 623
Query 536 CTTCGATCTCTGATGTTTCGATGAAACGAGAGGATAAAGATTGGTGGAAGGATGGATTGT 595
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 CTTCGATCTCTGATCTGTCGATGAAACGAGAGGATAAAGATTGGTGGAAGGATGGATTGT 683
Query 596 CAGAATCGCGTAGGAGTCAAAGTGTTGTCTCAAGGATCAACAGTGGGAGCTCAAAGAGCA 655
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 684 CAGAATCTCGTAGGAGTCAAAGTGTTGTCTCGAGGATCAACAGTGGGAGCTCAAAGAGCA 743
Query 656 GTGGTGGTAGTAGCAGTAGAAGTAATAGTGATCGAAGTCGAAACAGTCTAAG 707
|||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 744 GTGGTGGTAGTAGCAGTAGAAGCAATAGTGATCGAAGCCGAAACAGTCTAAG 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35967649252
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5