BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497425
Length=1693
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42400.1 | Symbols: VOZ2, ATVOZ2 | vascular plant one zinc f... 2645 0.0
> AT2G42400.1 | Symbols: VOZ2, ATVOZ2 | vascular plant one zinc
finger protein 2 | chr2:17654232-17656839 REVERSE LENGTH=1834
Length=1834
Score = 2645 bits (1432), Expect = 0.0
Identities = 1616/1699 (95%), Gaps = 35/1699 (2%)
Strand=Plus/Plus
Query 6 CCAGAGATCGGAGGAAGgagagagagagaCCAATCGCTGTTGCTTTGGTTTTGAGGGTTT 65
||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||
Sbjct 157 CCAGAGATCGGAGGAAGGAGAGAGAGATACCAATCTCTGTTGCTTTGGTTTTAAGGGTTT 216
Query 66 AGAGGAGATGTCAAACCATCCGAAGATCACATGTGTATCTTCGGCGCATCAGAATGTGGA 125
|||||||||||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct 217 AGAGGAGATGTCAAACCACCCGAAGATCAC------A---TCGGCGCATCAGAATGTGGA 267
Query 126 GGAGAAGCTAAGGGAACTTCAGGAGAGGTTCTGTCATCTTCAGGCTGCTAGGAAAGAAGG 185
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 268 GGAGAAGCTAAGGGAACTTCAGGAGAGGTTCTGTCATCTTCAAGCTGCTAGGAAAGAAGG 327
Query 186 GCGCCATGGTGACCTTGCGCTTTTGGAAGCCCAAATCTCTCAGAATATTCGTGAGTGGCA 245
||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 328 GCGGCATGGTGACCTTGCGCTTTTAGAAGCCCAAATCTCTCAGAATATTCGGGAGTGGCA 387
Query 246 AGCTGAACTTACTGCTCCTTCTCCTGAATCTTCTCT-TCTGGGTGAAGGTATTAGCCAAT 304
||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 388 AGCTGAACTCACTGCTCCTTCTCCTGAATCTTCTCTGT-TGGGTGAAGGTATTAGCCAAT 446
Query 305 TCCTTGAGGAGTTTGCTCCTATGTTGAAATTAGACGAGGAGGATGATGCAACTAGTACGC 364
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 447 TCCTTGAGGAGTTTGCTCCTCTGTTGAAATTAGACGAGGAGGATGATGCAACTAGTACGC 506
Query 365 TAAAGGAACACT-CTGCA-CAAAAGCCTGATCCTGAGGGTTTCGCTCAAAGCTTGTGCCC 422
|||| ||||| | ||| | | ||||||||||||||||||||| ||||||||||||||||
Sbjct 507 TAAAAGAACA-TGCTGGAGC-AAAGCCTGATCCTGAGGGTTTTTCTCAAAGCTTGTGCCC 564
Query 423 TCCTGAATGGACATCTGAGAATTTTAGTCAAAGTCCTTTCAACGGAAATTTCTCCTGCAG 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 565 TCCTGAATGGACATCTGAGAATTTTAGTCAAAGTCCTTTCAACGGAAATTTCTCCTGCGG 624
Query 483 CTTTGAGGATGCTCTTAATAACACAGAAACACGTGGCCAGCAACTCCATTATGGATATGA 542
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 625 CTTTGAGGATGCTCTTAATAGCACAGAAACACATGGCCAGCAACTCCATTATGGATATGA 684
Query 543 AGGGTTTGATCCAAGCATAAACACCGCTCCTGATTTCCATGACCAAAAACTCAGCAGCAA 602
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 685 AGGGTTTGATCCAAGCATAAACTCCGCTCCTGATTTCCATGACCAAAAACTCAGCAGCAA 744
Query 603 CTTGGATATAACTTCTCAGTATGATTATATTTTGTCGGAAGTGCGTCAGGAACTCGATAA 662
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 745 CTTGGATATAACTTCTCAGTATGATTATATTTTCTCCGAAGTGCGTCAGGAACTAGATAA 804
Query 663 CAGCCCTTCCATC-AAGCTTGATTCTTCTGAAGAGATTGACAACTTTACTGAATTTACGA 721
||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 805 CAGCCCTTCCA-CTAAGCTTGATTCTTCTGAAGAGATTGACAACTTTGCTGAATTTTCTA 863
Query 722 CTCCATCAAGTGTCCGTGTGCCTCCATCTGCATTTCTGGGACCTAAGTGTGCACTATGGG 781
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 864 CTCCATCAAGTGTCCGTGTGCCTCCATCTGCTTTTCTGGGACCTAAGTGTGCACTATGGG 923
Query 782 ATTGCACAAGGCCTGCTCAGGGATCTGAGTGGTACCTGGATTACTGCAGTAACTACCATG 841
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 924 ATTGCACAAGGCCTGCTCAGGGCTCCGAGTGGTACCTGGATTACTGCAGTAACTACCATG 983
Query 842 GGACTCTAGCTCTGAATGAAGATTCGCCTGGCACAGCACCTGTCTTAAGGCCGGGGGGCA 901
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 984 GGACTCTAGCTCTGAATGAAGATTCGCCTGGCACAGCACCTGTATTGAGGCCAGGGGGCA 1043
Query 902 TCAGTTTGAAAGATAATCTATTGATTGATGCTCTTCGTGCAAAGACTCAGGGTAAGAATG 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 TCAGTTTGAAAGATAATCTATTGATTGATGCTCTTCGTGCAAAGACTCAGGGTAAGAATG 1103
Query 962 TTGGCATCCCAGTGTGTGAAGGAGCTGTTAACACAAAATGCCCATGGAACGCAGCAGAGC 1021
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 TTGGGATCCCAGTGTGTGAAGGAGCTGTTAACACAAAATGCCCATGGAACGCAGCAGAGC 1163
Query 1022 TATTTCATCTTGAACTGGTTGAAGGCGAAACGATTAGAGAGTGGCTCTTCTTTGACAAAC 1081
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1164 TATTTCATCTTGAACTGGTTGAAGGCGAAACAATTAGAGAGTGGCTCTTCTTTGACAAAC 1223
Query 1082 CTAGAAGAGCATATGATAGCGGAAACCGAAAGCAAAGATCACTTCCAGATTACAGTGGAC 1141
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 CTAGAAGAGCATATGATAGCGGAAACCGAAAGCAAAGATCACTTCCAGATTACAGTGGAA 1283
Query 1142 GAGGTTGGCATGAATCAAGAAAAGTACCGATGAAGGAACAAGAAGGCCAGAAGAGATCAT 1201
||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
Sbjct 1284 GAGGTTGGCATGAATCAAGAAAACAACTGATGAAGGAACAAGAAGGCCAGAAGAGATCTT 1343
Query 1202 ACTATATGGATCCACAACCTCCAGGTCCCTTTGAGTGGCATCTCTTTGAATACCAAATCA 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 ACTATATGGATCCACAACCTCCAGGTCCCTTTGAGTGGCATCTCTTTGAATACCAAATCA 1403
Query 1262 ATGAATCTGACGCATGTGCGTTATATCGGCTAGAACTTAAAGTAGGAAATGGAAAGAAGA 1321
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1404 ATGAATCTGACGCATGTGCGTTATATCGCCTAGAACTTAAAGTAGGAAATGGAAAGAAGA 1463
Query 1322 GTCCTAAGGGAAAGATTTCAAAAGACCCTCTAGCTGATCTGCAGAAGAAGATGGGACAGT 1381
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1464 GTCCTAAGGGAAAGATTTCAAAAGACCCTCTGGCTGATCTGCAGAAGAAGATGGGACAGT 1523
Query 1382 TTAAAGTGGCGTCAGACAAACCCTCTCCTCCAACCAAAGGTCGTAAGGATTTAAGTTAGC 1441
|||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1524 TTAAAGTGGCTTCAGACAAACCCTCTCCTCCAACCAAAGGTCGTAAGGAGTGAAGTTAGC 1583
Query 1442 TATTGGCAATCTAACTCAAGACTCCTGCAACAATAGCTCCAAGTTGTCTCCAGCATTCTA 1501
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 TATTGGTAATCTAACTCAAGACTCCTGCAACAATAGCTCCAAGTTGTCTCCAGCATTCTA 1643
Query 1502 CAAAAGAGCCATCGTCATCTCTGtttt-ttttt------CTTTCTGACTGTATTATGACG 1554
|||||||||||||| || ||||||||| ||||| ||||||||||||||||||| |
Sbjct 1644 CAAAAGAGCCATCGCCACCTCTGTTTTCTTTTTTTTTTTCTTTCTGACTGTATTATGAAG 1703
Query 1555 AGATAGGATCATCTTTGATGTGTTGTGTTAATATGGACAAGTCTGGTCTTTGCCCTTTTT 1614
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 AGATAGGATC-T-TT-GATGTGTTGTGTTAATATGGACAAGTCTGGTCTTTGCCCTTTTT 1760
Query 1615 CTTGATAGAATCTGAGAACTAAGATGGGttttgtaaatttttgcattttatttttCTCCT 1674
|||||||||||| | || ||||||||| ||||||||||||||||||||||||||||
Sbjct 1761 CTTGATAGAATC-G-----TA-GATGGGTTT-GTAAATTTTTGCATTTTATTTTTCTCCT 1812
Query 1675 CTAAAACCATAAGGATTTT 1693
|||||||| |||||||||
Sbjct 1813 TTAAAACCACAAGGATTTT 1831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83684308515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5