BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497428
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56430.1 | Symbols: | F-box/FBD-like domains containing pro... 488 3e-137
> AT5G56430.1 | Symbols: | F-box/FBD-like domains containing protein
| chr5:22853323-22854575 REVERSE LENGTH=1083
Length=1083
Score = 488 bits (264), Expect = 3e-137
Identities = 355/398 (89%), Gaps = 10/398 (3%)
Strand=Plus/Plus
Query 356 CCACGCTTGTGTCTCTTGACCTATGTGTTATGTGCTCCTTAGATTGGTTGAATCTTATCC 415
||| ||| |||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 678 CCA-GCTCGTGTGTCTAGAGCTATGTGTTATGTGCTCCTTAGATTGGTTGAATCTTATCC 736
Query 416 TAAGCCGTTCACCTAAACTCCGAGCTCTCAGACTCTACCAATCAAGAGAGAGAGGCGGGA 475
| || |||||||||||||||||| |||||| |||||||||||||||||||||| | |||
Sbjct 737 TCAGACGTTCACCTAAACTCCGATCTCTCAAACTCTACCAATCAAGAGAGAGAAACTGGA 796
Query 476 GCTGCCGGAATTCTAGAA-ATGTCCGTACCAAGTGGGAGCAACCGAGTTCTGTTCCTGAA 534
||||| ||||||| | || |||||||||| || ||||||||||| | |||||||||||||
Sbjct 797 GCTGCAGGAATTCCA-AACATGTCCGTACTAAATGGGAGCAACCCAATTCTGTTCCTGAA 855
Query 535 TGCTTACTTGTGAGTCTCAAAACTGTTGAGTGGATTTTGTACAAAGGGACACAAGAAGAG 594
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 856 TGCTTACTTGTGAGTCTCGAAACTGTTAAGTGGATTTTGTACAAAGGGACACAAGAAGAG 915
Query 595 AAGGATGTGGTAAAGTATTTGTTAGAGAATGGAAACTTCATAAAAACTATGAGTATTGGA 654
||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct 916 AAGGATGTGGTGAAGTATTTGTTAAAGAATGGAAACTTCATAAAGACTATGAGTATTCGA 975
Query 655 TTCTCATCAGTAATCACGTTGGAAGAGAGAAACAAAATAC-AGTTGGAGTTTGAGT-CTA 712
|||||||||||| |||||||||||||||||| | | |||| | | ||||||||||| | |
Sbjct 976 TTCTCATCAGTAGTCACGTTGGAAGAGAGAATCCACATACCAAT-GGAGTTTGAGTTC-A 1033
Query 713 TGCCAAGGAGT--T-CTAGAAGATGTCAGCTTTCATTC 747
|| ||||| | | | || ||||||||||||||||||
Sbjct 1034 TGGGAAGGATTAATTCCAGCAGATGTCAGCTTTCATTC 1071
Score = 466 bits (252), Expect = 1e-130
Identities = 310/338 (92%), Gaps = 4/338 (1%)
Strand=Plus/Plus
Query 16 ACCCTTGTGGTTTTACGTC-TCATGAAAGGGACCATTGACGATGTTCCTTCGACAACTTG 74
|||||||||| |||||| | | |||||| ||||||||| ||||||| ||||||||||||
Sbjct 187 ACCCTTGTGGCTTTACG-CTTTATGAAATTGACCATTGAGGATGTTCATTCGACAACTTG 245
Query 75 TTTCCGGTCCCTCAAGACTTTGTCTCTTCTAGATGTGTTCTTCACAAGCGATAAAACCGT 134
|||||||||| |||||| ||| |||||||||||||| ||| ||||||||||||||||
Sbjct 246 TTTCCGGTCCGTCAAGAATTTATCTCTTCTAGATGTAAAGTTCTCAAGCGATAAAACCGT 305
Query 135 TGAGAGGCTTTTGTCTTGTTTCCCTATTCTTGAAACATTGGTTGTGGACCGATggggggg 194
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 306 TGAGAGGCTTTTGTCTTGTTTCCCTATTCTTGAAACATTGGTTGTGCACCGATGGGGCG- 364
Query 195 C-GAAAATGTGAAGACTTTCGCAATTTGTGTGCCATCGTTGCAGAGCTTAAAGATCCGCT 253
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 365 CTGACAATGTGAAGACTTTCGCAATTTGTGTGCCATCGTTGCAGAGCTTAAACATCCGCT 424
Query 254 ACAGAGTAGGGGGTTATCACGATCCAAAAAATGATCATGGATTTGTCATCAATGCTCCTT 313
||| |||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||
Sbjct 425 ACACAGTAGGGGGTTATCACAATCCAAAAACTGATCATGGATTTGTGATCAATGCTCCTT 484
Query 314 CTTTAAAGTATTTAGATATTGTTGATCATTTTAGGGGG 351
|||||||| ||||||||||||||||||||||||| |||
Sbjct 485 CTTTAAAGCATTTAGATATTGTTGATCATTTTAGTGGG 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5