BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497432
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35310.1 | Symbols: | Transcriptional factor B3 family prot... 1550 0.0
> AT2G35310.1 | Symbols: | Transcriptional factor B3 family protein
| chr2:14864855-14866598 FORWARD LENGTH=1149
Length=1149
Score = 1550 bits (839), Expect = 0.0
Identities = 1049/1147 (91%), Gaps = 28/1147 (2%)
Strand=Plus/Plus
Query 1 TCTCAAACTCTCATAACCAGC-------AGCgagagagtagagagtgtgtggagagagaC 53
||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 1 TCTCAAACTCTCATAACCAGCGAGAGTGAGTGAGAGAGTAGAGAGTGTGTGGAGAGATAC 60
Query 54 TAGGAAGTTGAAGGAAAAAACGAGAAAGATGGCTAGAAACAGTGACTATGATATGTGCAA 113
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 61 TAGGAAGTTGAAGGAAAAAGCGAGAAAGATGGCTAGAAACAGTGACAATGATATGTGCAA 120
Query 114 AGAAGAACGGAAGAGAGAGAGCTTCTTCAAGGTTCTACAAAGAGTTGATTTTTCTTCCGA 173
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 121 AGAAGAACGGAAGAGAGAGAGCTTCTTCAAGGTTCTACAGAGAGTTGATATTTCTTCTGA 180
Query 174 AAACTTGAGAGCACTTCCTTACGACTTTGTGAGAAGCTTCTCCAACAATGAGCTCTC-CG 232
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 GAACATGAGAGCACTTCCTTACGACTTTGTGAGAAGCTTCTCCAACAATGAGCTCTCTCG 240
Query 233 GTAAGATGAAGATAAAAGCGCAATGGGGAAGTTCTTGGGAAGTAGAAATCTGCAAGAATC 292
|||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 241 -TAAGATGAAGATAAAAGCTCGATGGGGAAGTTCTTGGGAAGTAGAAATCTGCAAAAATC 299
Query 293 CCAGATTCTATTTCATGGAGAAATCCGGATGGGTGAAGTTTGTGAGGGACAATGCCTTGG 352
| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 300 CAAGATTCTATTTCATGGAGAAATCCGGATGGGAGAAGTTTGTGAGTGACAATGCCTTGG 359
Query 353 GAGACAATGAGTTTCTTACCTTCACTCACAAAGG-AACAATGCGTTTTACAGTGAACATC 411
||| || ||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 360 GAGCCAGTGAGTTTCTTACCTTCACTCACAAAGGGAATA-TGCGTTTTACAGTGAACATC 418
Query 412 TTCAAGCAAGATGGCAAGGAGATGCTGCAGCCTCCACAATCCATGGCCTCCATGGCTTCT 471
|||| ||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||
Sbjct 419 TTCATGCAAGATGGCAAGGAGATGCTACAGCCTCCACAATCCATGTCCTTCATGGCTTCT 478
Query 472 TCTAGGCGCCGGCGCACTAAAACAGAACAAGGAATATCTTATCTTGCCACGACAATAACA 531
||||||| | | | ||||| ||||||||||||| ||| |||||||||||||||| ||
Sbjct 479 TCTAGGC-CA--C-C--TAAAAGAGAACAAGGAATACCTTCTCTTGCCACGACAATAGCA 532
Query 532 GCTGAATCTAATGGAGGAGAAAACTACACAAGGAAGCTCAACTTTGAGAAGAAGAAAGCT 591
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 533 GCTGAATCTAATGGAGGAGGGAACTACAAAAGGAAGCTCAACTTTGAGAAGAAGAAAGCT 592
Query 592 GCGGAATCCCAAAATTCCAAGAGGACCGAGAAAGTCTTTAGTGTCC-GAAGGGATTCTGC 650
| |||||| || ||||||||||||||||| |||||||||||||||| || | || |||||
Sbjct 593 GAGGAATCTCACAATTCCAAGAGGACCGATAAAGTCTTTAGTGTCCAGA-GAGAATCTGC 651
Query 651 AGGTGCCTCTTCATCTTCTGTTGCAGAATTCACCATCTTCATCAAGAAATCATACCTTAT 710
||||||||||||||||||||||||||||||| |||| || ||||| ||||||||||| ||
Sbjct 652 AGGTGCCTCTTCATCTTCTGTTGCAGAATTCTCCATGTTTATCAAAAAATCATACCTCAT 711
Query 711 CTTCATGAGGATCCCGAAATCTGTTCAAAGTATTCATATGCCGATGCAGAGAACGATTTT 770
|| |||| || ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 712 CTACATGTGGTTCCCGAAATCTGTTCAAAGTATTCATATGCCGAAGCAGAGAACGATTTT 771
Query 771 CAAGATACATCAGCCAAATATGAAGAAGTCATGGAATGTGGTTTACTTGGTGGCAAATAG 830
|||||||||||| ||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 772 CAAGATACATCACCCAAATATGAAGAAGTCATGGAATGTGGTTTACGTGGTGTCAGGGAC 831
Query 831 GGG-TGCAAGCTTCTCTGGTGGATGGAAACGTTTGGCTCAAGAGTATCCTGTAGCAGTTG 889
| | |||||||||||| |||||||||| ||||||||||||| |||||| |||||||||
Sbjct 832 GAAAT-CAAGCTTCTCTGCTGGATGGAAAGGTTTGGCTCAAGAATATCCTCTAGCAGTTG 890
Query 890 GAGACACTTGCAAGTTTTCATTCATCAAACAACACGAGCTGATTCTCTTTGTCTCAAAAC 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 GAGACACTTGCAAGTTTTCATTCATCAAACAACACGAGCTGATTCTCTTTGTCTCAAAAC 950
Query 950 CCTAAGAGGAG-CT-ACTC---ACTAGTGATGATGGATGTGAAGGTGTCAACTGAGAAAA 1004
||||||||||| || ||| | ||||||||||| ||||||||||||| |||||| |||
Sbjct 951 CCTAAGAGGAGACTCACTAGTGAATAGTGATGATGAATGTGAAGGTGTCTACTGAGTAAA 1010
Query 1005 AGACTGTTTATCAGTGTTGTCTTAACTTTTAGTTTTATGTTATGACTTAGTTCGGTTTAA 1064
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1011 AGACTGTTTATCAGTGTTGTCTTAAGTTTTAGTTTTATGTTATGACTTAGTTCGGTTTTA 1070
Query 1065 A-TTCAGAATGTCTATGGGGCGGATATATGTAGCTTGATATGTTTGG-ACCAATTTTAAT 1122
| |||||||||||||| || |||| |||||||||||||||| |||| ||||||||||||
Sbjct 1071 AGTTCAGAATGTCTATCGGATGGATCTATGTAGCTTGATATGATTGGGACCAATTTTAAT 1130
Query 1123 ATGTTGT 1129
|||||||
Sbjct 1131 ATGTTGT 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55371201135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5