BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497439
Length=1929
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11040.1 | Symbols: | Glycosyl hydrolase family 85 | chr3:... 1886 0.0
AT3G61010.2 | Symbols: | Ferritin/ribonucleotide reductase-lik... 455 8e-127
> AT3G11040.1 | Symbols: | Glycosyl hydrolase family 85 | chr3:3460143-3463312
FORWARD LENGTH=2106
Length=2106
Score = 1886 bits (1021), Expect = 0.0
Identities = 1241/1345 (92%), Gaps = 24/1345 (2%)
Strand=Plus/Plus
Query 593 GCTACCCAAAACTATCAGCTGAAGTTGCCGGGGACAGAAAGTTCGACGTCTACATGGGAA 652
|||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 758 GCTACCCAAACCTATCAGCTGAAGTTGCTGGGGACAGAAAATTCGATGTCTACATGGGAA 817
Query 653 TTGATGTCTTTGGTCGGGGCTCTTTTGGTGGTGGGCAATGGACTGTAAATGCTGCTCTTG 712
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 818 TTGATGTTTTTGGGCGGGGCTCTTTTGGTGGTGGGCAATGGACTGTAAATGCTGCTCTGG 877
Query 713 ATTTGCTGAAGAGAAACAATGTGTCAGCGGCCATATTTGCTCCTGGATGGGTTTATGAGA 772
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 878 ATTTGCTGAAGAGAAACAATGTGTCAGCTGCCATATTTGCTCCTGGATGGGTTTATGAGA 937
Query 773 CTGCACAACCCCCCAATTTTCATACAGCTCAGAATAAATGGTGGTCACTTGTCGAGAAGT 832
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 938 CTGCACAACCCCCCAATTTTCACACAGCTCAGAATAAATGGTGGTCACTTGTCGAGAAGT 997
Query 833 CATGGGGAATAGTCCAAACTTATCCACAAGTCTTGCCTTTTTACTCAGATTTCAATCAGG 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 CATGGGGAATAGTCCAAACTTATCCACAAGTCTTGCCTTTTTACTCAGATTTCAATCAGG 1057
Query 893 GATTTGGTTACCATGTTTCACTTGAAGGTCGCCAACTGTCAGATGCTCCATGGTACAACA 952
| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1058 GCTTTGGTTACCATGTTTCACTCGAAGGTCGCCAACTGTCAGATTCTCCATGGTACAACA 1117
Query 953 TATCTTGCCAAAGTCTTCAGAAT-T-C---AA-TGAA-GAAGACAACAAAGATATCATCC 1005
| |||||||||||||||||| | | | || | || ||||||||||||||||||||||
Sbjct 1118 TTTCTTGCCAAAGTCTTCAGCCTCTCCTAGAATTCAATGAAGACAACAAAGATATCATCC 1177
Query 1006 ACGTCACTGTT------G-A-GG-AAAATGTTTTTGACATTTCTGAGCAAACATTTAAAC 1056
| ||||||||| | | || |||||||||||||| ||||||||| |||||||||||
Sbjct 1178 AGGTCACTGTTGACCAAGAAGGGAAAAATGTTTTTGACTTTTCTGAGC-AACATTTAAAC 1236
Query 1057 AATTACTATGAATTTGATAGTGCTCGAGAGGGATCTTTTAACAGAGGAGGGAACATTGCT 1116
||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| | |
Sbjct 1237 AATTACTATGAATATGATAGTGCTCGAGAGGCATCTTTTAACGGAGGAGGGAACATCGTT 1296
Query 1117 TTTAGAGGAAAACTCAAGGGAGATGCGTATTTCACAACAAGGCTCTTCAAACCCCATCTT 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 TTTAGAGGAAAACTCAAGGGAGATGCGTATTTCACAACAAGGCTCTTCAAACCCCATCTT 1356
Query 1177 CAGCTTTCATCTTCCCCCATCACAATCTCCTACTCTGTGAAATCAGATGAAACCTCTAAA 1236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 CAGCTTTCATCTTCCCCCATCACAATCTCCTACTCTGTGAAATCAGATGAAACCTCTAAT 1416
Query 1237 CTTGGAATCCTGCTTTCTTTCTCATCTCCATCAC-AGGAGACGAAATCCATTA-TCGTTG 1294
||||||||||||||||||||||| |||||||||| || |||| |||||||| | |||| |
Sbjct 1417 CTTGGAATCCTGCTTTCTTTCTCGTCTCCATCACTAG-AGACTAAATCCAT-ACTCGTGG 1474
Query 1295 CGCCCCAAGAATCC-ATCCGTAGATTCAACGACATGTTCTTACAGTGTCTCGCCACATCA 1353
|||| | || ||| ||||| ||||| ||||||||| ||||||||||||| ||||||||
Sbjct 1475 CGCCAGAGGA-TCCCATCCGCAGATTTGACGACATGTCCTTACAGTGTCTCACCACATCA 1533
Query 1354 GCGCAGACTGTATCTGAGTGGACGGTGCACGAGACAAGCCTTGTCATGGATGGTCACACA 1413
| |||||||||||| ||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct 1534 GTGCAGACTGTATCCGAGTGGACGGTACACGAGGCAAGTCTTGTCATGGATGGTCACACA 1593
Query 1414 CTGACTGAAATCTCTGCCTTTTGCTACAGACCAGAGAATTTGACAAAGAGTGTAGAATAT 1473
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 1594 CTGACTGAAATCTCTGCCTTTTGCTACAGACCAGAGAATTCGACAAAGAGTGCAGAATTT 1653
Query 1474 GTTGCATTGCTCGGACACATCTCAATCAAAGATCATGTTCAGTACCAGCAGAAATCCGAG 1533
|||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||
Sbjct 1654 GTTGCATTGCTCGGACACATCTCAGTCAAAGATCATGTTCAAAACCAGCAGAACCCCGAG 1713
Query 1534 ACTTTACTTCCAGCTTCATCGTGGGTCATCAAGGCTGATAACGTAGAGCTTGTACCAGGA 1593
| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1714 ATTTTACTTCCAGCTTCATCGTGGGTCATCGAGGCTCATAACGTAGAGCTTGTACCAGGC 1773
Query 1594 AATTCCGGTTCCAAGATCCTCAGGGCTAAGCTCGAATGGAGACAAAAACACCTAGAAGAT 1653
|||||| |||||||||||||||||| |||||| ||||||||||| ||| |||| ||||||
Sbjct 1774 AATTCCAGTTCCAAGATCCTCAGGGTTAAGCTAGAATGGAGACAGAAAGACCTCGAAGAT 1833
Query 1654 TCTGTGCTCCCAAGGTACAATGTATATGCAGAGAATGTGAACTCCACTGATCTAAGACCG 1713
|| | || ||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1834 TCCGCATTCACAAGGTACAATGTATATGCAGAGAATGTGAAGTCGACTGATCTAAGACCG 1893
Query 1714 AGGAAAGTTCTAGAGAAACCGAGAAGTGAGACAGTGTTCCTTGGAGTTGTTCACGTACCA 1773
||||| |||||||||||||||| ||| ||||||||| |||||||| ||| ||||||||||
Sbjct 1894 AGGAAGGTTCTAGAGAAACCGAAAAGCGAGACAGTGCTCCTTGGAATTGCTCACGTACCA 1953
Query 1774 GCCTATTATGTAGCGGAACTGGTGGTAGAATCAGACGTGAAAGCAGTCCGTTTCGTGGTT 1833
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1954 GCCTATTATGTAGCGGAACTGGTGGTAGAATCAGACGTGAAGGCAGTCCGTTTCATGGTT 2013
Query 1834 CAAGCATGTGCCGAAGATGGTTCATTAGGGAAGCTGGATGAAGCTCTTAACCTTCTTGTG 1893
||||| |||| |||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 2014 CAAGCTTGTGGCGAAGATGCTTCATTGGGGAAGCTGGATGAAGCTCTTAACCTTCTTGTG 2073
Query 1894 GAACTAGAAGGTATCTCATCTAAAT 1918
|| ||||||||| ||||| |||||
Sbjct 2074 GACCTAGAAGGTCTCTCAG-TAAAT 2097
Score = 577 bits (312), Expect = 2e-163
Identities = 369/397 (93%), Gaps = 2/397 (1%)
Strand=Plus/Plus
Query 1 ATGCCCAAATCCAATGACGGCGATGTCGCAGAATCTGAAGCCGTTCCGTTGCTCGATCTT 60
|||||||||||||| || | ||| || ||| |||||||||||||||||||||| ||||||
Sbjct 1 ATGCCCAAATCCAACGATGACGACGTTGCACAATCTGAAGCCGTTCCGTTGCTTGATCTT 60
Query 61 GCCAAGCCGTCGTTACCTATATCTTTCCCGATCAAATCTCTTCAAGATCTGAAATCTCGT 120
| |||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 61 GTCAAGCCATCGTTACCTATATCTTTCCCGATCAAAGCTCTTCAAGACCTGAAATCTCGC 120
Query 121 TCTTACTTCGTTTCCTTTCACTTCCAGTTTAATCGCTCCACCGTACCTCTCCGGCGAGAC 180
|||||||| | ||||||||| |||||||||||||||||||| |||||| |||| ||| ||
Sbjct 121 TCTTACTTTGATTCCTTTCATTTCCAGTTTAATCGCTCCACAGTACCTTTCCGCCGAAAC 180
Query 181 TCCGA-TGACTTACCGAATCGCCCAAGGGTTTTAGTCTGCCATGACATGAAAGGAGGGTA 239
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCGACTG-TTTACCGAATCGCCCAAGGGTTTTAGTCTGCCATGACATGAAAGGAGGGTA 239
Query 240 TGTAGATGACAAGTGGGTACAAGGATGTGAAAACGACGCCGGATTTGCGATTTGGCATTG 299
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 240 TGTAGATGACAAGTGGGTACAAGGGTGTGAAAACGAAGCCGGATTTGCGATTTGGCATTG 299
Query 300 GTATTTGATGGACATTTTTGTTTACTTCTCTCATTCTTTGGTCACTCTTCCTCCTCCTTG 359
||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 300 GTACTTGATGGACATTTTTGTTTACTTCTCTCATTCTCTGGTCACTATTCCTCCTCCTTG 359
Query 360 CTGGACTAATACTGCTCATAGGCATGGCGTTAAAGTA 396
|||||| ||||||||||||||||||||||||||||||
Sbjct 360 CTGGACCAATACTGCTCATAGGCATGGCGTTAAAGTA 396
> AT3G61010.2 | Symbols: | Ferritin/ribonucleotide reductase-like
family protein | chr3:22571327-22575180 REVERSE LENGTH=1925
Length=1925
Score = 455 bits (246), Expect = 8e-127
Identities = 308/339 (91%), Gaps = 0/339 (0%)
Strand=Plus/Plus
Query 1071 TGATAGTGCTCGAGAGGGATCTTTTAACAGAGGAGGGAACATTGCTTTTAGAGGAAAACT 1130
||||||| ||||||||| |||||||||| |||||| |||| ||||||||||||||||
Sbjct 841 TGATAGTACTCGAGAGGCATCTTTTAACGGAGGAGACTACATCACTTTTAGAGGAAAACT 900
Query 1131 CAAGGGAGATGCGTATTTCACAACAAGGCTCTTCAAACCCCATCTTCAGCTTTCATCTTC 1190
| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 901 CGAGGGAGATGCGTATTTCACAACAAGGCTCTTCAAATCCCATCTTCATCTTTCATCTTC 960
Query 1191 CCCCATCACAATCTCCTACTCTGTGAAATCAGATGAAACCTCTAAACTTGGAATCCTGCT 1250
|||||||||||| || | |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 961 CCCCATCACAATTTCTTTCTCTGTGACATCAGATGAAACCTCTAAACATGGAATCCTGCT 1020
Query 1251 TTCTTTCTCATCTCCATCACAGGAGACGAAATCCATTATCGTTGCGCCCCAAGAATCCAT 1310
||||||||||||||||||||| ||||||||||||||| ||||| | | |||||||||||
Sbjct 1021 TTCTTTCTCATCTCCATCACACGAGACGAAATCCATTCTCGTTTCACGACAAGAATCCAT 1080
Query 1311 CCGTAGATTCAACGACATGTTCTTACAGTGTCTCGCCACATCAGCGCAGACTGTATCTGA 1370
| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1081 CTGTAGATTCAACAACATGTTCTTACAGTGTCTCGCCACGTCAGCGCAGACTGTATCCGA 1140
Query 1371 GTGGACGGTGCACGAGACAAGCCTTGTCATGGATGGTCA 1409
|||||| || || ||||||||||||||| |||||| |||
Sbjct 1141 GTGGACAGTACAGGAGACAAGCCTTGTCCTGGATGATCA 1179
Score = 377 bits (204), Expect = 2e-103
Identities = 303/351 (86%), Gaps = 5/351 (1%)
Strand=Plus/Plus
Query 1504 GATCATGTTCAGTACCAGCAGAAATCCGAGACTTTACTTCCAGCTTCATCGTGGGTCA-T 1562
|||||||||||||||||||||||| |||||||||||||||| || ||| ||| ||||| |
Sbjct 1175 GATCATGTTCAGTACCAGCAGAAACCCGAGACTTTACTTCCGGCATCACCGTTGGTCATT 1234
Query 1563 CAAGGCTGATAACGTAGAGCTTGTACCAGGAAATTCCGGTTCCAAGATCCTCAGGGCTAA 1622
|| ||| ||||| | ||||||||||| || |||| |||||||||| |||||||| |||
Sbjct 1235 GAA-GCTCATAACATGGAGCTTGTACCCGGTTATTCTGGTTCCAAGAGCCTCAGGGTTAA 1293
Query 1623 GCTCGAATGGAGACAAAAACACCTAGAAGATTCTGTGCTCCCAAGGTACAATGTATATGC 1682
||| ||||||||||| ||| |||| |||||||||| |||||||||||||||| |||||
Sbjct 1294 GCTAGAATGGAGACAGAAAGACCTTGAAGATTCTGCATTCCCAAGGTACAATGTGTATGC 1353
Query 1683 AGAGAATGTGAACTCCACTGATCTAAGACCGAGGAAAGTTCTAGAGAAACCGAGAAGTGA 1742
|||||||| || || |||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1354 GGAGAATGTAAAGTCTACTGATCTAAGACCGAGGAAGGTTCTAGAGAAGCCGAGAAGCGA 1413
Query 1743 GACAGTGTTCCTTGGAGTTGTTCACGTACCAGCCTATTATGTAGCGGAACTGGTGGTAGA 1802
|||||||| || ||||| | |||||||||| ||||||| |||| ||||||||||||||
Sbjct 1414 AACAGTGTTTCTCGGAGTCGCTCACGTACCATCCTATTACATAGCAGAACTGGTGGTAGA 1473
Query 1803 ATCAGACGTGAAAGCAGTCCG-TTTCGTGGTTCAAGCATGTGCCGAAGATG 1852
|||||||||||||| |||||| ||| ||| ||||||| ||||| ||||||
Sbjct 1474 ATCAGACGTGAAAGGAGTCCGCTTT-GTG-TTCAAGCCTGTGCTAAAGATG 1522
Score = 335 bits (181), Expect = 1e-90
Identities = 221/240 (92%), Gaps = 3/240 (1%)
Strand=Plus/Plus
Query 697 GTAAATGCTGCTCTTGATTTGCTGAAGAGAAACAATGTGTCAGCGGCCATATTTGCTCCT 756
||||||||||||| | |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 514 GTAAATGCTGCTC-T-ATTTGCTGAAGAGAAACAATGTGTCAGCTGCCATGTTTGCTCCT 571
Query 757 GGATGGGTTTATGAGACTGCACAACCCCCCAATTTTCATACAGCTCAGAATAAATGGTGG 816
|||||||| |||||||||||||||| ||||||||| || | ||||||||||||||||||
Sbjct 572 GGATGGGTATATGAGACTGCACAACAACCCAATTTTAATTCGGCTCAGAATAAATGGTGG 631
Query 817 TCACTTGTCGAGAAGTCATGGGGAATAGTCCAAACTTATCCACAAGTCTTGCCTTTTTAC 876
|||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||
Sbjct 632 TCACTTGTCGAGAAGTCATGTGGAATAGTCCAAACT-ATCCACAAGTCTTCCCTTTTTAC 690
Query 877 TCAGATTTCAATCAGGGATTTGGTTACCATGTTTCACTTGAAGGTCGCCAACTGTCAGAT 936
|| |||||||||||||| |||||||||||||||||||| |||||| ||||| |||||||
Sbjct 691 TCGGATTTCAATCAGGGCTTTGGTTACCATGTTTCACTCCAAGGTCTCCAACAGTCAGAT 750
Score = 272 bits (147), Expect = 8e-72
Identities = 239/280 (85%), Gaps = 20/280 (7%)
Strand=Plus/Plus
Query 123 TTACTTCGTTTCC-TTTCACTTCCAGTTTAATCGCTCCACCGTACCTCTCCGGCGAGACT 181
|||||||| |||| ||||||||||||||||||| ||||||||| |||||||||||| |||
Sbjct 2 TTACTTCGATTCCTTTTCACTTCCAGTTTAATCTCTCCACCGTTCCTCTCCGGCGACACT 61
Query 182 CCGATGACTTACCGAATCGCCCAAGGGTTTTAGTCTGCCATGACATGAAAGGAGGGTATG 241
||||||||||||||||||||||||||| ||||||| |||| || ||||||||| || |||
Sbjct 62 CCGATGACTTACCGAATCGCCCAAGGGATTTAGTCCGCCACGATATGAAAGGA-GG-ATG 119
Query 242 TAGATGACAAGTGG----GTACAAGGATGTGAAAACGACGCCGGATTTGCGATTTGGCAT 297
||| ||||||||| || |||| ||||||||||||||||||||||||| | |
Sbjct 120 AAGAGGACAAGTGGATATATATAAGGGTGTGAAAACGACGCCGGATTTGCGAAT---C-- 174
Query 298 TGGTATTTG-ATGGACATTTTTGTTTACTTCTCTCATTCTTTGGTCACTCTTCCTCCTCC 356
| | || | ||||||||||||||||||||||||| |||| ||| ||||||||||||| |
Sbjct 175 -G-T-TTCGGATGGACATTTTTGTTTACTTCTCTCCTTCTCTGGCCACTCTTCCTCCTTC 231
Query 357 TTGCTGGACTAATACTGCTCATAGGCATG--G-CGTTAAA 393
| ||||||| ||||||||||||||| ||| | |||||||
Sbjct 232 T-GCTGGACCAATACTGCTCATAGGGATGATGGCGTTAAA 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95531637135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5