BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497460
Length=2111
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10370.1 | Symbols: SDP6 | FAD-dependent oxidoreductase fami... 1742 0.0
> AT3G10370.1 | Symbols: SDP6 | FAD-dependent oxidoreductase family
protein | chr3:3216368-3219270 FORWARD LENGTH=2267
Length=2267
Score = 1742 bits (943), Expect = 0.0
Identities = 1028/1066 (96%), Gaps = 18/1066 (2%)
Strand=Plus/Plus
Query 1052 ATGGGGTTGATAGTTCCTAAAACTAAGGATGGTCGCGTTGTGTTTATGTTACCATGGTTG 1111
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1128 ATGGGGTTGATAGTCCCTAAAACTAAGGATGGCCGCGTTGTGTTTATGTTACCGTGGTTG 1187
Query 1112 GGAAGAACAGTAGCAGGCACTACAGACTCTAACACTTCAATCACTTCACTTCCAGAACCT 1171
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1188 GGAAGAACAGTAGCAGGCACTACAGACTCTAATACTTCAATCACTTCACTTCCAGAACCT 1247
Query 1172 CATGAAGATGAGATTCAATTTATACTGGATGCAATCAGCGACTATCTTAACATTAAGGTT 1231
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1248 CATGAAGATGAGATTCAATTTATACTGGACGCAATCAGCGACTATCTTAACATTAAGGTT 1307
Query 1232 CGACGTACTGATGTTCTTTCGGCTTGGAGTGGTATCCGTCCGTTGGCCATGGATCCAACA 1291
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1308 CGACGTACTGATGTTCTTTCGGCTTGGAGTGGGATCCGTCCATTGGCCATGGATCCAACA 1367
Query 1292 GCCAAGAGCACAGAGAGTATCTCCAGAGACCATGTTGTCTTCGAGGAAAATCCTGGTCTG 1351
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1368 GCCAAGAGCACAGAGAGTATCTCCAGAGACCACGTTGTCTTCGAGGAAAATCCTGGTCTG 1427
Query 1352 GTTACAATCACGGGTGGAAAATGGACAACTTATCGAAGCATGGCGGAAGATGCAGTTGAT 1411
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1428 GTTACAATCACGGGTGGAAAGTGGACAACTTATCGAAGCATGGCGGAAGATGCAGTTGAT 1487
Query 1412 GCAGCAATCAAATCGGGAAAACTT-AGTCCAACCAATGAATGTGTAACGCAGAAACTACA 1470
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 1488 GCAGCAATCAAATCGGGACAACTTAAG-CCAACCAATGAATGTGTAACGCAGAAACTACA 1546
Query 1471 GCTTCTGGGTTCTTATGGATGGGAACCATCTTCCTTCACAACTCTTGCACAGCAATACGT 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 GCTTCTGGGTTCTTATGGATGGGAACCATCTTCCTTCACAACTCTTGCACAGCAATACGT 1606
Query 1531 GCGCATGAAGAAAACCTACGGTGGTAAAGTGGTTCCTGGAGCAATGGACACAGCTGCTGC 1590
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 GCGCATGAAGAAAACATACGGTGGTAAAGTGGTTCCTGGAGCAATGGACACAGCTGCTGC 1666
Query 1591 AAAGCATTTGTCTCATGCCTATGGTTCAATGGCTGACCGAGTTGCCACCATAGCTCAGGA 1650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 AAAGCATTTGTCTCATGCCTATGGTTCAATGGCTGACCGAGTTGCCACCATAGCTCAGGA 1726
Query 1651 GGAGGGTTTGGGGAAACGGTTGGCGCACGGGCATCCGTTTTTGGAAGCCGAGGTTGCTTA 1710
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1727 GGAGGGTTTGGGGAAACGGTTGGCGCATGGGCATCCGTTTTTGGAAGCTGAGGTTGCTTA 1786
Query 1711 CTGTGCAAGGCACGAGTACTGCGAATCAGCGGTTGATTTCATAGCAAGGAGATGTAGAAT 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 CTGTGCAAGGCACGAGTACTGCGAATCAGCGGTTGATTTCATAGCAAGGAGATGTAGAAT 1846
Query 1771 CGCGTTCTTGGACACTGATGCAGCGGCTCGGGCGTTACAGCGTGTGGTGGAGATTCTAGC 1830
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1847 CGCGTTCTTGGACACTGATGCAGCGGCTCGGGCGTTGCAGCGTGTGGTGGAGATTCTAGC 1906
Query 1831 AAGTGAACACAAGTGGGACAAGTCGAGGCAGAAGCAAGAGTTGCAAAAGGCTAAAGAGTT 1890
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 AAGTGAACACAAATGGGACAAGTCGAGGCAGAAGCAAGAGTTGCAAAAGGCTAAAGAGTT 1966
Query 1891 TCTTGAAACTTTCAAGTCTTCCAAAAACGCACAGTTTAACGATGGCAAGCACAACTAAAG 1950
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 TCTTGAAACTTTCAAGTCGTCCAAAAACGCACAGTTTAACGATGGCAAGCACAACTAAAG 2026
Query 1951 CGGCCTCTCAGAAATTTACTTACACTACT--AT-ATTGAATTTATTTATTTC-TATTTTC 2006
|||||||||||| |||||||||||||| | || |||||||||||| ||||| |||||||
Sbjct 2027 CGGCCTCTCAGAGATTTACTTACACTATTTTATTATTGAATTTATT-ATTTCCTATTTTC 2085
Query 2007 AAATTTGTTGGATTTTT-GGGTAGCGATTAGCGATTAGCGAGAACGAATAATAATAATAC 2065
||||||||| |||||| ||||||| | | | | |||||||||||||||||| || |
Sbjct 2086 CAATTTGTTGAATTTTTTGGGTAGC--T-A-C--T-AGCGAGAACGAATAATAA-AA--C 2135
Query 2066 TGTACGGATGGAATAATAATACTGCGGCTACTCATGTTTCTCGGAT 2111
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2136 TGTACGGATGGAATAATAATACTGCGGCTACTCATGTTTCTCGGAT 2181
Score = 1683 bits (911), Expect = 0.0
Identities = 1006/1052 (96%), Gaps = 5/1052 (0%)
Strand=Plus/Plus
Query 1 TTCGCAATCATTttcttcttcttcttcttcCCATGATCG-C-CTCGCTTCCCAACGCAAT 58
|||||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||
Sbjct 41 TTCGCAATCATTTTCTTCTTCTTC-T-TTCCCATGATCGTCTCTCGCTTCCCAACGCAAT 98
Query 59 CTTCTTCACCCAATCTCTGAATCTCTCCTCAATTCCATGTCTGTCGCTTCTATTCGCCGT 118
|||||||||||||||||| |||||||||| |||||||||||| ||||||| |||||||||
Sbjct 99 CTTCTTCACCCAATCTCTAAATCTCTCCTAAATTCCATGTCTCTCGCTTCCATTCGCCGT 158
Query 119 TTAGCCGCCGGAGCCGCTGTAATTGCCGCTGCATCCGGTGGCGCTGTCTATCTGTCTCCG 178
||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 159 TTAGCTGCCGGAGCTGCCGTAATTGCCGCTGCATCCGGTGGCGCTGTCTACCTGTCTCCG 218
Query 179 TCGGTTGCCTCCAGCGACAAAGGAGGTGGTCCGATTCTAGATTCCTTGAGGCGTAGGATT 238
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 219 TCGGTTGCCTCCAGCGACAAAGGAGGTGGTCCGATTCTAGATTCGTTGAGGCGTAGGCTT 278
Query 239 GGTGATCCCACCGCTTCTGTGCCGTCTCGATCTGCTCAAGAGTCTTCTCTGATTGCAGCC 298
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 279 GGTGATCCCACCGCTTCTGTACCGTCTCGATCTGCTCAAGAGTCTGCTCTGATTGCAGCC 338
Query 299 ACTGCTTCTGATCCGCTCGATGTTCTCGTCATTGGCGGTGGAGCCACTGGTTCTGGAGTC 358
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 339 ACCGCTTCTGATCCGCTCGATGTTCTCGTCATTGGCGGTGGAGCCACCGGTTCTGGAGTT 398
Query 359 GCTCTCGACGCTGCTACACGTGGCCTCCGTGTTGGTTTGGTGGAGCGAGAGGATTTCTCC 418
||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 399 GCTCTTGACGCTGTTACACGTGGCCTCCGTGTTGGTTTGGTGGAGCGCGAGGATTTCTCC 458
Query 419 TCCGGGACTTCTTCGCGATCAACGAAGCTGATTCATGGAGGGGTTCGTTACTTGGAGAAA 478
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 459 TCTGGGACTTCTTCGCGATCTACAAAGCTGATTCATGGAGGGGTTCGTTACTTGGAGAAA 518
Query 479 GCTGTTTTCAATCTTGATTATGGACAGCTGAAGCTTGTATTTCACGCGCTTGAGGAGCGT 538
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 519 GCTGTTTTCAATCTTGATTATGGACAGCTGAAGCTTGTATTTCACGCTCTTGAGGAGCGT 578
Query 539 AAACAGCTCATCGAGAATGCACCACATCTCTGCCATGCTCTGCCCTGTATGACACCTTGT 598
||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 579 AAACAGCTCATTGAGAATGCGCCACATCTCTGTCATGCTCTGCCCTGTATGACACCTTGT 638
Query 599 TTTGACTGGTTCGAAGTTATCTACTTCTGGATGGGTTTGAAAATGTATGATTTGGTCGCT 658
||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||
Sbjct 639 TTTGATTGGTTCGAAGTTATCTACTTCTGGATGGGGTTGAAGATGTATGACTTGGTTGCT 698
Query 659 GGACCACGGTTATTGCATCTGTCCAGATATTACTCTGCAAAAGAGTCTATTGAGCTCTTC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 GGACCACGGTTATTGCATCTGTCCAGATATTACTCTGCAAAAGAGTCTATTGAGCTCTTC 758
Query 719 CCCACTCTTGCAAGGAAAGGGAAAGACAAGAATTTGAGGGGTACTGTTGTGTATTATGAT 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 CCCACTCTTGCAAGGAAAGGGAAAGACAAGAATTTGAGGGGTACTGTTGTGTATTATGAC 818
Query 779 GGGCAAATGAATGATTCACGTCTGAATGTGGGCTTGGCATGTACTGCCGCGTTAGCTGGT 838
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 819 GGGCAAATGAACGATTCACGTCTGAATGTGGGTTTGGCATGTACTGCCGCGTTAGCTGGT 878
Query 839 GCAGCCGTTCTCAACCATGCCGAGGTTGTCTCTCTTATTACAGATGATTCTACTAAGAGA 898
|| || |||||||||||||||||||||||||| |||||||| |||||| |||||||||||
Sbjct 879 GCGGCAGTTCTCAACCATGCCGAGGTTGTCTCGCTTATTACTGATGATGCTACTAAGAGA 938
Query 899 ATAATTGGTGCCCGAGTTCGTAACAATCTCACAGGCCAAGAATTTAACACCTATGCAAAA 958
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 939 ATAATTGGTGCCCGAATTCGTAACAATCTCACAGGCCAAGAATTTAACAGCTATGCAAAA 998
Query 959 GTAGTTGTTAATGCGGCAGGACCGTTCTGTGATTCCATTAGAAAAATGATTGATGAAGAT 1018
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 999 GTAGTTGTTAATGCGGCAGGACCGTTCTGTGATTCCATTAGGAAAATGATTGATGAAGAT 1058
Query 1019 ACCAAAACCAATGATTTGTCCAAGCAGCGGTG 1050
|| |||||||||||||||||||||||||||||
Sbjct 1059 AC-AAAACCAATGATTTGTCCAAGCAGCGGTG 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104668136325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5