BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497461
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56410.1 | Symbols: | Protein with RNI-like/FBD-like domain... 1500 0.0
AT5G62970.1 | Symbols: | Protein with RNI-like/FBD-like domain... 811 0.0
> AT5G56410.1 | Symbols: | Protein with RNI-like/FBD-like domains
| chr5:22848508-22850331 REVERSE LENGTH=1512
Length=1512
Score = 1500 bits (812), Expect = 0.0
Identities = 1027/1127 (91%), Gaps = 30/1127 (3%)
Strand=Plus/Plus
Query 1 ATGGACAAGATCACTGGATTTTCTGATGATGAATTGCTCGTAAAGATCTTATCATTTCTT 60
||||||||||| |||||||||||||||||||||||||| || ||||| ||||| ||||||
Sbjct 1 ATGGACAAGATTACTGGATTTTCTGATGATGAATTGCTAGTGAAGATTTTATCGTTTCTT 60
Query 61 TCAACAAAAGCTGCTGTTAGAACAAGTATTTTGTCGAAGCAGTGGAAGTTTCTTTGGAGG 120
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct 61 CCAACAAAAGCTGCTGTAACAACAAGTATTTTGTCGAAGCAGTGGAAGTTTCTTTGGATG 120
Query 121 CGGATACCAAAACTTGAGTTTCACGATGACATTAAAAACTATATACTCTCCATGAGGGGT 180
||| ||||||||||||||| |||||||||||||||| ||||| |||| ||| |||||
Sbjct 121 CGGCTACCAAAACTTGAGTACCACGATGACATTAAAATTTATATTCTCTATATGCGGGGT 180
Query 181 ----G-AG-AGTAGAACCGATTCT-TTACTGTTAGAAGGAAGCCAGAGGATGTGGCGTTT 233
| || ||||||||||||||| || ||||||||| |||||||||||||||||||||
Sbjct 181 GGGAGTAGAAGTAGAACCGATTCTATT-CTGTTAGAAAAAAGCCAGAGGATGTGGCGTTT 239
Query 234 TATTGACATGAATCTGCCATTACATTGCTCTCCCGTAATAGAGAGCTTGAGTCTTACGTT 293
|||||| | |||||||||||||||| ||||||||||||||||||| ||| | |||||| |
Sbjct 240 TATTGATAAGAATCTGCCATTACATAGCTCTCCCGTAATAGAGAGTTTGCGACTTACGAT 299
Query 294 ATACAATGAACTATTTCAACCTG-AAGATATT-ATATTGTGGGTTGAAATTGCAGTTTCT 351
|||||| |||||||||||||||| ||| |||| || ||||||||||||||||||||||||
Sbjct 300 ATACAACGAACTATTTCAACCTGAAAG-TATTAAT-TTGTGGGTTGAAATTGCAGTTTCT 357
Query 352 CGTTGTGCTCAA-GAGCTAAGCGTTAGCTATTCTCCTTACAAGGGAAAACGTGATGCATT 410
||||||| | || |||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct 358 CGTTGTG-TTAAGGAGCTAAGCGTTAGATTTTCTCCTTTCAAGGGAAAACGTGATGCATT 416
Query 411 ACTGCCGACTAGCTTGTATACTTGCAAATCACTCGTGACATTGAAACTAAGAGACAACAT 470
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 417 ACTGCCGACTACCTTGTATACTTGCAAATCACTCGTGACATTGAAACTAAGAGAAAACAT 476
Query 471 TCTCGTGGATGTTCCTCATGTTTTTTGCCTCCCCTCCTTGAAAACTTTGCACCTTGT-AC 529
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 477 TCTCGTGGATGTTCCTCATGTTTTTTGCCTCCCATCCTTGAAAACTTTGCACCTT-TCAC 535
Query 530 GTATGACATACGCAGATGAAGAATCTCTTCAACGGCTTTTGTCTAATTGCTTTGTTTTGG 589
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ATGTGACATACGCAGATGAAGAATCTCTTCAACGGCTTTTGTCTAATTGCTTTGTTTTGG 595
Query 590 AAGATCTGGTTGTGGAACGACGTGTAGGTGACAATGTGAGAAATGTTT-CTGTTATCATC 648
||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 596 AAGATCTGGTTGTGGAACGACGTGTAGGTGACAATGTCAGAAAT-TTCGCTGTTATCATC 654
Query 649 CCATCATTGCTTAGTTTATCTTTTGAGATTTTGGGTCAATGTTCTTCGGAAGGGTATGTG 708
|| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 655 CCGTCATTGCTTAGTTTATCCTTTGAGATTTTGGGTCAATGTTCTTCGGAAGAGTATGTG 714
Query 709 ATACATACTCCTTCTTTGAAGAATTTCAAAGCTAAAGATTTTGGTAAGTGTTCCACATGT 768
||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||
Sbjct 715 ATACATACTCCTTCTTTGAAGTATTTCAAAGCTAGAGATTTTGGTGAGTGTTCCACATGT 774
Query 769 TTGATATTGAATATGCCTAAGCTGGAGGAGGCATATATCGCCACTGCTGGTCGCAATATC 828
||||||||||| ||||||||||||||||||| || | | |||||||||||| |||||||
Sbjct 775 TTGATATTGAACATGCCTAAGCTGGAGGAGGTATTTGTTTCCACTGCTGGTCACAATATC 834
Query 829 AAGAAGCTTCTTGAATCTTTCACATATGTCAAGCGTCTTTCATTGTTCATACTAAACAAC 888
|||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 835 AAGAAGCTTCTTGAATCTGTCACATATGTCAAGCGTCTTTCATTGTTCATACCAGACAAC 894
Query 889 AATGCAGAGGCTTTCACTGCTGTATATGGTGGTGACGATGTTGTCTTTAATCAGCTTGAG 948
||||||||||||||||||||| ||||||||| || ||| | ||||| |||||||||||
Sbjct 895 AATGCAGAGGCTTTCACTGCTCTATATGGTGATGT-GAT-T-GTCTTCAATCAGCTTGA- 950
Query 949 A-ATCTGAAGTTTATCATCCGT-AGCGCATATTGGTCCAAGTTACTATACTGGTTGCTCA 1006
| |||||| |||||||||| | | |||||||| ||||||||||| |||||||||||||
Sbjct 951 ACATCTGACGTTTATCATCTGGGAA-GCATATTGTTCCAAGTTACTTTACTGGTTGCTCA 1009
Query 1007 TAGCTTCTCCCAAACTTCGAAACTTGGAGTTCAATGAACCAATT-TCACGTGGATGGTAT 1065
||||||||||||||||||||||||||||||||||||| | |||| ||| ||| |||||||
Sbjct 1010 TAGCTTCTCCCAAACTTCGAAACTTGGAGTTCAATGATC-AATTCTCAAGTG-ATGGTAT 1067
Query 1066 A-ATACACTGGTTTTCTGGGAGCAACTGAT-ACTTGTGTTCCTCAAT 1110
||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 1068 GGATACACTGGTTTTCTGGGAGCAAATGATTACTAGTGTTCCTCAAT 1114
Score = 283 bits (153), Expect = 3e-75
Identities = 187/203 (92%), Gaps = 3/203 (1%)
Strand=Plus/Plus
Query 1402 AATATGGACAAGATCTGTGGGGTTTCCGAAGATGAATTGCTAGTAAAAATTCTATCGTTT 1461
||||||||||||||| ||||| ||||||| |||| |||||||||||| ||||||||||||
Sbjct 1288 AATATGGACAAGATCAGTGGGATTTCCGATGATGTATTGCTAGTAAAGATTCTATCGTTT 1347
Query 1462 CTTCCAACGAAAGTTGCTGTAAGCACAAGTGTTTTGTCTAAGCAATGGAAGTATCTTTGG 1521
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1348 CGTCCAACGAAAGTTGCTGTAAGCACAAGTGTTTTGTCTAAGCAATGGAAGTATCTTCGG 1407
Query 1522 AAGCGGGTGCTAAAACTTGAGTACGATGACACCGAGTGCAAAACTAAATCGTCTAAATCA 1581
||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||
Sbjct 1408 AAGCGGGTGCTAAAACTTGAGTACGATGATACTGAGTGTAAAACTAAACCGTCTAAATCA 1467
Query 1582 -CG--TAAGAGGTTCCGGCGTTT 1601
| ||||||||||||| ||||
Sbjct 1468 TCACATAAGAGGTTCCGGTGTTT 1490
Score = 193 bits (104), Expect = 6e-48
Identities = 124/134 (93%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 1106 TCAATTGGTTAGGTAACCATGATTCCATAGAAGGGAAAGCTCTGGCGACATATATTTTGA 1165
|||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1139 TCAAGTGGTTAGGTAACGGTGATTCCATAGAAGGGAAAGATCTGGCGACATTTATTTTGA 1198
Query 1166 GAGAGTCTTGCCAGTTAAAGACTGCAACAATTTCGATCGGACAAGGACAAAAGAAGCTTG 1225
|| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1199 GAAACTCTTGCCAGTTAAAGACTGCAACAATTTCGATCGGACAAGGACAAAACAAGCTTG 1258
Query 1226 AGATGGAGAGGGAG 1239
|||| |||| ||||
Sbjct 1259 AGATAGAGAAGGAG 1272
> AT5G62970.1 | Symbols: | Protein with RNI-like/FBD-like domains
| chr5:25272033-25273537 FORWARD LENGTH=1350
Length=1350
Score = 811 bits (439), Expect = 0.0
Identities = 780/940 (83%), Gaps = 41/940 (4%)
Strand=Plus/Plus
Query 189 AACCGATTCTTTACTGTTAGAAGGAAGCCAGAGGATGTGG-CGTTTTATTGACATGAATC 247
|||| ||||| || ||| ||| | |||| |||||| || | ||||||||| | |||||
Sbjct 216 AACCTATTCTATAGTGTCCGAAAGCGGCCATAGGATGCGGTC-TTTTATTGAGAAGAATC 274
Query 248 TGCCATTACATTGCTCTCCCGTAATAGAGAGCTTGAGTCTTACGTTATACAATGAACTAT 307
||||||||||| ||||||| || |||||||||||| |||| | ||| | || ||| |||
Sbjct 275 TGCCATTACATAGCTCTCCGGTCATAGAGAGCTTGCGTCTCAAGTTTTTCACTGAGGTAT 334
Query 308 TTCAACCTGAAGATATTATATTGTGGGTTGAAATTGCAGTTTCTCGTTGTGCTCAAGAGC 367
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 335 TTCAACCTGAAGATATCAAATTGTGGGTTGAAATTGCAGTTTCTCGTTGTGCTCAAGAGC 394
Query 368 TAAGCGTT-AGCTATTCTCCTTACAAGGGAAAACGTGATGCATTACTGCCGACTAGCTTG 426
|||||||| | || || ||| ||||| ||||| ||||||||||||||| | ||||
Sbjct 395 TAAGCGTTGA-CTTTTTTCC---CAAGGAAAAACACAATGCATTACTGCCGAGAAACTTG 450
Query 427 TATACTTGCAAATCACTCGTGACATTGAAACTAAGAGACAACATTCTCGTGGATGTTCCT 486
||||| |||||||| || |||||||||||| ||||| |||||||||||||||||||||||
Sbjct 451 TATACATGCAAATCGCTTGTGACATTGAAATTAAGAAACAACATTCTCGTGGATGTTCCT 510
Query 487 CATGTTTTTTGCCTCCCCTCCTTGAAAACTTTGCACCTTGTACGTATGACATACGCAGAT 546
|||||||||| |||||| |||||||||| ||||||||||| |||| ||||||||| ||||
Sbjct 511 CATGTTTTTTCCCTCCCTTCCTTGAAAATTTTGCACCTTGAACGTGTGACATACGGAGAT 570
Query 547 GAAGAATCTCTTCAACGGCTTTTGTCTAATTGCTTTGTTTTGGAAGATCTGGTTGTGGAA 606
| ||||||||||||||||||||| |||||||||| |||||||||||| ||||||| |||
Sbjct 571 GGAGAATCTCTTCAACGGCTTTTATCTAATTGCTCGGTTTTGGAAGATTTGGTTGTTGAA 630
Query 607 CGACG-TGTAGGTGACAATGTGAGAAATGTTTC-TGTTATCATCCCATCATTGCTTAGTT 664
| | | | |||||||||||||||||| ||| |||||||||||| |||||||||||||
Sbjct 631 CTA-GATACAGGTGACAATGTGAGAAA-GTTAGATGTTATCATCCCTTCATTGCTTAGTT 688
Query 665 TATCTTTTGAGATTT-TGGGTCAATGTTCTTCGGAAGGGTAT-GTGATACATACTCCTTC 722
|||| |||| ||| | | | | | || ||| ||||||||| | |||| ||||||||||
Sbjct 689 TATCCTTTGGGATGTCTAGAT-ACTGCGCTTATGAAGGGTATAG-GATAGATACTCCTTC 746
Query 723 TTTGAAGAATTTCAAAGCTAA-AGATTTTGGTAAGTGTTCCACATGTTTGATATT-GAAT 780
||||||| |||||||| || | |||||| |||| || | | | ||||| | ||||
Sbjct 747 TTTGAAGTATTTCAAA-CTTACAGATTTAAGTAAAACTTTCTCCGGCTTGAT-TGAGAAT 804
Query 781 ATGCCTAAGCTGGAGGAGGCATATATCGCCACTGCTGGTCGCAATATCAAGAAGCTTCTT 840
||||| ||||||||||||||| ||||| |||||| ||| |||| ||||||||||||||
Sbjct 805 ATGCCGAAGCTGGAGGAGGCAAATATC---ACTGCTCGTCACAATTTCAAGAAGCTTCTT 861
Query 841 GAATCTT-TCACATATGTCAAGCGTCTTTCATTGTTCATACTAAACAACAATGCAGAGGC 899
||| || |||||| ||||||||||||||||||| |||| ||||||| ||||||||||
Sbjct 862 GAA-CTGGTCACATCTGTCAAGCGTCTTTCATTGAACATAGAAAACAACGATGCAGAGGC 920
Query 900 TTTCACTGCTGTATATGGTGGTGACGATGTTGTCTTTAATCAGCTTGAGAATCTGAAGTT 959
| |||||| ||||||| | ||| || | ||||||||| |||||||| ||||||| ||
Sbjct 921 CCTAACTGCTATATATGGAGATGAT-AT-T-GTCTTTAATGAGCTTGAGCATCTGAATTT 977
Query 960 T-ATCATCCGTAGCGCATATTGGTCCAAGTTACTATACTGGTTGCTCATAGCTTCTCCCA 1018
| || || | || ||||||||||| ||||||||||||||||||||| ||||||||| |
Sbjct 978 TCAT-ATTCATAATGCATATTGGTCTGAGTTACTATACTGGTTGCTCAAAGCTTCTCCTA 1036
Query 1019 AACTTCGAAACTTGGAGTTCAATGAACCAAT-TTCACGTGGATGGTA-TAA---TACACT 1073
|||| | ||||||||||||| |||||| ||| |||||||| |||||| || ||||||
Sbjct 1037 AACTACAAAACTTGGAGTTCGATGAAC-AATGTTCACGTG-ATGGTACTATGGGTACACT 1094
Query 1074 GG---TTTTCTGGGAGCAACTGATACTTGTGTTCCTCAAT 1110
|| |||||||| | |||| || | | ||||||||||||
Sbjct 1095 GGCGGTTTTCTGGAACCAACCGA-A-TAGTGTTCCTCAAT 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79116058920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5