BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497463
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23840.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2023 0.0
> AT3G23840.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr3:8611126-8612690 FORWARD LENGTH=1445
Length=1445
Score = 2023 bits (1095), Expect = 0.0
Identities = 1267/1352 (94%), Gaps = 3/1352 (0%)
Strand=Plus/Plus
Query 1 ACTCAGAATCATCTTTGCCAATATTTCTCTTCCACCTTTTGTCTCATAACCATGGGTCGA 60
||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||| |
Sbjct 1 ACTCAGAATCATCTTTGTCAATATTTCTCTACCATCTTTTGTCTCATAGCCATGGGTCTA 60
Query 61 GTTCAAGAAGAGGGAAGCGGTCCAGTTCATGGCTTCCGATTATCGACCGTGAGTGCGTCC 120
||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||
Sbjct 61 GTTCAAGAAGAGGGAAGCGGTCCTGTTCATGGCTTTCGGTTATCAACCGTGAGTGCGTCC 120
Query 121 CAACCCTCAGAGACCGGTACGACCCACGAACCCACCGGTTTAGACCTCGCCATGAAGCTT 180
| || |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 CTGCCGTCAGAGACAGGTACGACCCACGAGCCCACCGGTTTAGACCTCGCCATGAAGCTC 180
Query 181 CACTACCTAAAGGCGGTTTACATTTACTCGGCCGAGACAGCACGTGACTTGACCGTGATG 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 181 CACTACCTAAAGGCGGTTTACATTTACTCGGCCGGGACAGCACGTGACTTGACTGTGATG 240
Query 241 CACGTGAAGACGCCTTTGTTTTCAGTGTTCGACCAGATCCCATGTATCATTGGCAGGTTC 300
|||||||| |||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 241 GACGTGAAGGCGCCTTTGTTTTCAGTGTTCTACCAGATCCCTTGCATCATTGGCAGGTTC 300
Query 301 AGGCGACACGATTCGGGACGTCCGTACATAAAGTGTAACGACTGTGGCACACGTTTCGTG 360
|||||||| || ||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 301 AGGCGACATGAATCGGGACGTCCGTACCTAAAGTGCAACGACTGTGGCACACGTTTCGTG 360
Query 361 GAAAGTCATTGTGATCTCACTGTGGAGGAGTGGCTCCATGTACCGGACCGGTCCGTTGAT 420
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 GAGAGTCATTGTGATCTCACTGTGGAGGAGTGGCTCCGTGTACCGGACCGGTCCGTTGAT 420
Query 421 GAGGCTCTGGTTTACCATCAATCAGTTGGACCGGAATTAGCATTCTCTCCTTTGCTCTAT 480
||| || |||||||||||||| |||||||||| || || |||||||||||||||||||||
Sbjct 421 GAGTCTTTGGTTTACCATCAACCAGTTGGACCAGATTTGGCATTCTCTCCTTTGCTCTAT 480
Query 481 ATTCAGATGACCCGGTTTAGCTGCGGTGGATTAGCTTTGGGCTTAAGCTGGGCTCATGTC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 ATTCAGATGACCCGGTTTAGCTGCGGTGGATTAGCTTTGGGCTTAAGCTGGGCTCATATC 540
Query 541 ATGGGAGATCCATTCTTTCTTTCTCATTTCTTCAACTTATGGGCTCAAGCCTTTGCTGGT 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATGGGAGATCCATTCTCTCTTTCTCATTTCTTCAACTTATGGGCTCAAGCCTTTGCTGGT 600
Query 601 GAGAAGATCTACTCCCCCAAAACCTCTGAT-ACAGAAAGAGTCTGTCAAAACCCGAACTC 659
| ||||||||||| |||||||||||||| | ||||| |||| || ||||||||||| |||
Sbjct 601 GGGAAGATCTACTGCCCCAAAACCTCTG-TCACAGAGAGAGACTTTCAAAACCCGACCTC 659
Query 660 AACGGTCAAAAAACCCAATTCAATCAAACGGGTTGACCCGGTTGGAGATCTCTGGGTCGC 719
||| |||||||||| ||||| |||||| |||||||| |||||||||||||||||||||
Sbjct 660 AACATTCAAAAAACCGGATTCAGTCAAACAGGTTGACCTGGTTGGAGATCTCTGGGTCGC 719
Query 720 TCCGAATAACAGCAAAATGACAACATTCTCCTTCAATTCAACGGTTAACGATCTCAAATC 779
|||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| |
Sbjct 720 TCCGAATAACAGCAAAATGACAACATTCTCCTTCAATTTAACGGTTAACGATTTAAAAAC 779
Query 780 ACATTTTCCGGCGAACGGAGACGACGAATTCAAGATTCTCGCTGGAATTATATGGAAATG 839
||||||||||| ||||||||||| ||||||| |||||||| ||||||| |||||||||||
Sbjct 780 ACATTTTCCGGTGAACGGAGACGGCGAATTCGAGATTCTCACTGGAATCATATGGAAATG 839
Query 840 TGTTGCGACGGCGAGGGGAGAATCAGCTCCGGTGACGATTACGGTTATCAGATTGGATCC 899
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 840 TGTTGCGACGGTGAGGGGAGAATCAGCTCCGGTGACGATTACGGTTATCAGATCGGATCC 899
Query 900 GAAGGAGTTGAAGCCTAGAGCGGTGAGAAATGGTCAGATGATAAGTTCCGTTCACGTCGA 959
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 900 GAAGAAGTTGAAGCCTAGAGCGGTGAGAAATGGTCAGATGATAAGTTCCATTCACGTCGA 959
Query 960 TTTCTCGGTGGCGGAGGCGAGTCTGGAGGAGATTGTGAAAGCAATCGGTGAAGCGAGAGA 1019
|||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| |||
Sbjct 960 TTTCTCGGTGGCGGAGGCGAGTTTGGAGGAGATTGTGAAATCGATCGGTGAAGCGAAAGA 1019
Query 1020 TGAGAGGTTTGGGATCGATGATATTGTTGATGATGTTTCGGATTTTATTGTTTACGGAGC 1079
||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGAGAGGGTTGTGATCGATGAGATTGTTGATGATGTTTCGGATTTTATTGTTTACGGAGC 1079
Query 1080 GAATTTGACGTTTGTGGATATGAGTGAAGTTGATTTTTATGAGGCGAAAGTTATGGGGAA 1139
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GAATTTAACGTTTGTGGATATGAGTGAAGTTGATTTTTATGAGGCGAAAGTTATGGGGAA 1139
Query 1140 GTCACCGGAATCGGTTTATTGTAATGTTCAGGGGATTGGTGACGACGGAGCTGTGGTGGT 1199
|| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1140 ATCGCCGGAATCGGTTTATTGTAATGTTCAGGGGATTGGGGACGACGGAGCAGTGGTGGT 1199
Query 1200 TTTACCGGGGGTTGTGGAGGAGGAGAGAGTTGTGACGGTGACGTTACCGGAGGATGAGAT 1259
||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 1200 TTTACCGGGGGTTGTGGAGGAGGAGAGGGTTGTGACGGTGACATTACCGGTGGATGAGAT 1259
Query 1260 TGAGAAGGTGAAATGGGAAATGAAGAATTGTGGTTTGATCACGCCGTTAGTTTAACGGAG 1319
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1260 TGAGAAGGTGAAATGGGAAATGAAGAAATGTGGTTTGATCACGCCGTTAGTTTAACGGTG 1319
Query 1320 GATTGAAGGAATTATTTTATGCGGTTATCGTT 1351
|| |||| ||| |||||||||||||||||||
Sbjct 1320 AAT-GAAGAAATCATTTTATGCGGTTATCGTT 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66515722125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5