BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497464
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10730.1 | Symbols: SUN2, ATSUN2 | SAD1/UNC-84 domain protei... 2169 0.0
AT5G04990.1 | Symbols: SUN1, ATSUN1 | SAD1/UNC-84 domain protei... 658 0.0
> AT3G10730.1 | Symbols: SUN2, ATSUN2 | SAD1/UNC-84 domain protein
2 | chr3:3358328-3360682 REVERSE LENGTH=1756
Length=1756
Score = 2169 bits (1174), Expect = 0.0
Identities = 1415/1526 (93%), Gaps = 38/1526 (2%)
Strand=Plus/Plus
Query 1 AAGATCATGTCGGCATCAACGGTGTCAATCACCGCTAGTCCTACGAGGGCAATTAGGCGG 60
|||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 155 AAGATCATGTCGGCGTCAACGGTGTCAATCACCGCTAGTCCT---AGGACAATAAGGCGG 211
Query 61 ACGCCGGTTCTCTCCGGTGAGAATAAATCCAATTTTGATTTCCCGCCGAGCGAATCTCAT 120
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 212 ACGCCGGTTCTCTCCGGTGAGAAGAAATCTAATTTTGATTTCCCGCCGAGCGAATCTCAT 271
Query 121 GCCAATGCGGCAATTGGAGAGTCTTCCGCTGGTACGAACAAGGATCTGATTCGCTCCGAG 180
||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 272 GCCAATGCGGCAATTGGAGAGTCGTCTGCTGGTACGAACAAGGATCTGATTCGCGCCGAG 331
Query 181 GCTGCCGCTGAGAGATCTAACACCTACGACGTCGGTCCTGTGACTAGGAAATCGGGATCC 240
||||||| ||||||||| |||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct 332 GCTGCCGGTGAGAGATCCAACACCTACGACGTAGGTCCGGTGACAAGGAAATCAGGATCC 391
Query 241 ACCGCGACGGGCACTAATACAACCACCACGCAGCGTCGAACGCGGAAGTCTCAGGGGAAT 300
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 392 ACCGCGACGGGGACTAATACAACCACCACGCAGCGTCGGACGCGGAAGTCTCAGGGGAAT 451
Query 301 AAGACAGATAAG-GGGCAGTGGAAGACAGTGGTTAGGGTATTCGCGAAGCAATTTGGGGC 359
|||| |||| || ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 452 AAGATAGAT-AGAGGGAAATGGAAGACAGTGGTTAGGGTATTCGCGAAGCAATTTGGGGC 510
Query 360 TCTTTTGTTACTTGTTGGATTGATTCAATTGATTAGGAAATTGACTTTGAAGGATTCGTC 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 511 TCTTTTGTTACTTGTTGGATTGATTCAGTTGATTAGGAAATTGACTTTGAAGGATTCGTC 570
Query 420 TCTATCTGCTTCTAATTTCCCAATTGAAACGGAAATGGTGCTTTCGGAATTGGAGAGTCG 479
||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TCTGTCTTCTTCGAATTTCCCAATTGAAACGGAAATGGTGCTTTCGGAATTGGAGAGTCG 630
Query 480 GATTTCGGCTGTTGATGGTTTGGTAAAGACTACTACGAAGATGATGCAGGTTCAAGTTGA 539
|||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 631 GATTTCTGCAGTTGATGGTTTGGTGAAGACTACGACGAAGATGATGCAGGTTCAAGTTGA 690
Query 540 ATTTCTTGATAAGAAGATGGAAAGCGAATCAAGAGCATTGAGGCAGACGATAGATTCCAC 599
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 691 GTTTCTTGATAAGAAGATGGATAGTGAATCAAGAGCATTGAGGCAGACGATAGATTCCAC 750
Query 600 ATCTTCTGTGTTGCAGAGTTG-GTTGAAGAAGGTAGAGTCTAAGACGGAGAGATTGCAGG 658
|||||||||||| || || || |||||||||||||||||||||||| ||||| || ||||
Sbjct 751 ATCTTCTGTGTTACATAG-TGAGTTGAAGAAGGTAGAGTCTAAGACAGAGAGGTTACAGG 809
Query 659 TTTCCGTAGATGAGTTAAATGCTAAACCTTTGGTGTCTAGAGAGGAATTAGAGAGAGTTT 718
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 810 TTTCTGTAGATGAGTTAAATGCTAAACCTTTGGTGTCTAGAGAGGAGTTAGAGAGAGTTT 869
Query 719 ACGAGGAGTTGAAGAAGGGTAAGGTCGGTGATTCTGATCTTAACATTGATGAATTGAGGG 778
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 870 ACGAGGAGTTGAAGAAGGGTAAGGTCGGTGATTCTGATGTTAACATTGATAAACTGAGGG 929
Query 779 CTTATGCTCGTGACGTAGTGGAGAAAGAGAT-TGGAAAGCATGCCGCTGATGGCCTTGGC 837
|||||||||||||| |||||||||||||||| ||||| |||| || |||||||||||
Sbjct 930 CTTATGCTCGTGACATAGTGGAGAAAGAGATAGGGAAA-CATGTTGCAGATGGCCTTGGT 988
Query 838 CGAGTAGACTATGCGTTAGCGTCTGGTGGGGCTTTTGTAATGGGGCATTCGGATCCGTTT 897
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 989 CGAGTAGATTATGCGTTAGCGTCTGGTGGAGCTTTTGTAATGGGGCATTCGGATCCGTTT 1048
Query 898 CTTGTTGGAAGTGGAG-GTAATTGGTTTCGGACAAGCAGGCGGCGGGTTCATAGCAAAGC 956
|||||||||| ||| | ||||||||||| ||||||||||| | |||||||||||||||||
Sbjct 1049 CTTGTTGGAAATGG-GCGTAATTGGTTTGGGACAAGCAGGAGACGGGTTCATAGCAAAGC 1107
Query 957 GGTTAAGATGTTAACTCCGAGTTTCGGGGAGCCTGGACAGTGTTTTCCTCTGAAAGGAAG 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 GGTTAAGATGTTAACTCCGAGTTTCGGGGAGCCTGGACAGTGTTTTCCTCTGAAAGGAAG 1167
Query 1017 CAATGGCTATGTTCTAGTCAGGCTAAGAGCACCAATAATTCCAGAGGCCGTTACCTTGGA 1076
|||||| |||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 1168 CAATGGATATGTTCTAGTCAGGCTAAGAGCACCAATAATTCCAGAAGCTGTTACTTTGGA 1227
Query 1077 GCATGTCTCTGAGGCTGTAGCGTATGACAGATCGAGCGCCCCAAAGGATTGCCGGGTATC 1136
||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1228 ACATGTCTCTAAGGCTGTAGCATATGACAGATCGAGCGCCCCAAAGGATTGCCGTGTATC 1287
Query 1137 AGGATGGCTAGGTGACATAGATATGGAGACTGAAACCATGCCCATTCTTACAGAATTCAG 1196
||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 1288 AGGATGGCTAGGTGACATAGATATGGAGACTGAGACAATGCCCCTTCTTACAGAATTCAG 1347
Query 1197 TTACGACTTAGACAGGTCCAATGCACAGACATTCGACATTGCAGAGTCTGCTCATTCGGG 1256
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1348 TTACGACTTAGACAGGTCCAATGCACAGACATTCGACATTGCAGACTCTGCTCACTCAGG 1407
Query 1257 ACTTGTCAACACTGTCAGGCTAGACTTCAATTCCAACCATGGAAGCTCTTCACACACTTG 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 ACTTGTCAACACTGTCAGGCTAGACTTCAATTCCAACCATGGAAGCTCTTCACACACTTG 1467
Query 1317 CATCTACCGCTTCAGGGTTCATGGCTGTCAACTAGACTCAGTCTCTGTTGTTCATGCTTG 1376
||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 1468 CATCTACCGCTTCAGGGTTCATGGCCGTGAACTAGACTCAGTCTCTGTTGCTCATGCTTG 1527
Query 1377 ATCTGAA-GTCCACGTGAAACTTTTCTTCTATTTGTAACAT-C--t-t--t---t-t-t- 1423
||||||| |||||||| ||||||||||||| |||||||||| | | | | | | |
Sbjct 1528 ATCTGAAAGTCCACGTCAAACTTTTCTTCTCTTTGTAACATTCCCTCTAATAGATATCTC 1587
Query 1424 t-tt--------GT-T-AGTTTGTGTGGTGGGAAAGCTTCT---AGTCTGTAATCAGAAT 1469
| || || | ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1588 TCTTCTTTTTTTGTGTTAGTTTATGTGGTGGGAAAGCTTCTCTTAGTCTGTAATCAGAAT 1647
Query 1470 CATTTGGTTGTATTCGTGCTTATTAG 1495
|||||||||||||||||| |||||||
Sbjct 1648 CATTTGGTTGTATTCGTGATTATTAG 1673
> AT5G04990.1 | Symbols: SUN1, ATSUN1 | SAD1/UNC-84 domain protein
1 | chr5:1471481-1473964 REVERSE LENGTH=1827
Length=1827
Score = 658 bits (356), Expect = 0.0
Identities = 1063/1391 (76%), Gaps = 102/1391 (7%)
Strand=Plus/Plus
Query 7 ATGTCGGCATCAACGGTGTCAATCACCGCTAGTCCTACGAG-GGCAATTAGGCGGACGCC 65
|||||||||||||||||||| |||||||||| | | || | || | ||| ||||||||
Sbjct 195 ATGTCGGCATCAACGGTGTCGATCACCGCTAATACGGCG-GCAGCGACTAGACGGACGCC 253
Query 66 GGTTCTCT-CCGGTGAGAATAAATCCAATTTTGATTTCCCGCCGAGCGAATCTCATGCCA 124
| |||| | |||| ||||| ||||| || ||||||| ||| | |||||||| | ||| |
Sbjct 254 GATTCT-TGCCGGAGAGAAAAAATCAAACTTTGATTACCCTCAAAGCGAATCGCTTGCGA 312
Query 125 A-TGCGGCAATTGGAGAGTCTTCCGCTGGTACGAACAAG-GATCTGATTCGCTCCGAGGC 182
| | || |||| | | ||| ||||||| | || ||||||| ||| || ||
Sbjct 313 ACGGTGG-TGTTGG-G-G-AAGCCGGTGGTACG-AGTAGAGATCTGAGCCGCGGTGAAGC 367
Query 183 TGCCGC-TGAGAGATCTAACACCTAC--GACGTCGGTCCTGTGACTAGGAA-ATCGGGAT 238
| || | ||| ||||| || || || | ||||||||||| | ||| || | |
Sbjct 368 TACC-CTTGATCGATCT--CAGGGACAAGATTTGGGTCCTGTGACGA-GAAGGTCTGTTT 423
Query 239 CCACCGCGACGGGCACTAATACAACCACCACGCAGCGTCGAACGCGGAA-GTCT-CAGGG 296
|| | |||||||| |||||||| ||| | |||||||| || |||||||| || | | |
Sbjct 424 CCGCTGCGACGGGGACTAATACCACCGCTACGCAGCGCCGGACGCGGAAGGT-TGC-GAC 481
Query 297 GAATAAGACAGATAAGGGGCAGTGGAAGACAGTGGTTAGGGTATTCGCGAAGCAATTTGG 356
|||| | || || | || ||||||||||||||| ||| |||| |||||||| ||||
Sbjct 482 TCCTAAGTCTGAGAAAGCGCGGTGGAAGACAGTGGTGAGGATATTTGCGAAGCAGCTTGG 541
Query 357 GGCTCTTTTG-TTACTTGTTGGATTGATTCAATTGATTAGGAA-ATTGACTT-TGAAGGA 413
|| |||||| | | ||||||| || |||||||||| ||||| | ||| || | ||||
Sbjct 542 TGCGCTTTTGATCA-TTGTTGGGTTAATTCAATTGACGAGGAAGA-TGA-TTCTCAAGGC 598
Query 414 TTCGTCTCTAT-CTGCTTCTAATTTC--CCAATTGAAACGGAAATGGTGCTTTCGGAATT 470
||| |||| | || | || ||||| | | ||||||||| |||| | |||||| |||
Sbjct 599 TTCTTCTCCGTCCT-C-TCCGATTTCTTCTTA-TGAAACGGAGATGGCGTTTTCGGGATT 655
Query 471 GGAGAGTCGGATTTCGGCTGTTGATGGT-TTGGTAAAGACTACTACGAAGAT-GATGCAG 528
||| || || ||| ||| || |||||| || || ||| |||| ||||| | |||||||
Sbjct 656 GGAAAGCCGAATTGCGGAAGTAGATGGTCTT-GTTAAGGCTACGACGAA-TTCGATGCAG 713
Query 529 GTTCAAGTTGAATTTCTTGATAAGAAGATGGAAAGCGAATC--AAGAGCATTGAGGC-AG 585
|||||||||||||| ||||||||||| ||||| || ||| | ||| || || |||| ||
Sbjct 714 GTTCAAGTTGAATTGCTTGATAAGAAAATGGAGAGGGAAGCAAAAGTGC-TT-AGGCAAG 771
Query 586 ACGATAGATTCCACATCTTCTGTGTTGCAGAGTTG-GTTGAAGAAGGTAGAGTCTAAG-A 643
| || || | | |||||| || ||||| || |||||||||| |||| ||| || |
Sbjct 772 A-AATCGAGAGGAAAGCTTCTGCATTTCAGAG-TGAGTTGAAGAAGATAGAATCT-AGAA 828
Query 644 CGGAGAGA-TTGCAGGTTTCCGTAGATG-AGTTAAATGCTAAACCTTTGGTGTCTAGAGA 701
| ||| | | | || || ||||||| || ||||||||||||||| |||| | | |||
Sbjct 829 CTGAGTCACTAG-AGAAGTCTGTAGATGAAG-TAAATGCTAAACCTTGGGTGACGAAAGA 886
Query 702 GGAATTAGAGA-GAGTTTACGAGGAGTTGAAGAAGGGTAAGGTCGGTGATTCTG-----A 755
|| ||||||| || |||| ||||| |||||||||| || || | |||||||| |
Sbjct 887 TGAGTTAGAGAGGA-TTTATGAGGAACTGAAGAAGGGGAATGTTGATGATTCTGCTTTTA 945
Query 756 -T---CTTAACATTGATGAATTGAGGGCTTATGCTCGTGACGT-AGTGGAGAAAGAGATT 810
| ||| |||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 946 GTGAGATTAGCATTGATGAATTGAGGGCTTATGCTCGTGATATTA-TGGAGAAAGAGATT 1004
Query 811 GGAAAGCATGCCGCTGATGGCCTTGGCCGAGTAGACTATGCGTTAGCGTCTGGTGGGGCT 870
| ||||||||| |||||||||||||||||||| || ||||| || || |||||||| |||
Sbjct 1005 GAAAAGCATGCTGCTGATGGCCTTGGCCGAGTTGATTATGCATTGGCTTCTGGTGGTGCT 1064
Query 871 TTTGTAATGGGGCATTCGGATCCGTT-TCTTGTTGG-AA-GTGGAGGTAATTGGTTT-CG 926
||||| |||| |||||| ||||| || ||||||||| || | |||| || |||||| ||
Sbjct 1065 TTTGTGATGGAGCATTCAGATCC-TTATCTTGTTGGTAAAG-GGAG-TAGCTGGTTTGCG 1121
Query 927 GACAAGCAGGCGGCGGGTTCATAGCAAA-GCGGTTAAGATGTTAACTCCGAGTTTCGGGG 985
|| | || |||||| | ||||| | || ||||||||||||||| ||||||| ||||| |
Sbjct 1122 -ACTACCATGCGGCGCGCTCATA-CGAATGCGGTTAAGATGTTATCTCCGAGCTTCGGTG 1179
Query 986 AGCCTGGACAGTGTTTTCCTCTGAAAGGAAGCAATGGCTATGTTCTAGTCAGGCTAAGAG 1045
|||||||||| ||||||||||||||||| ||| | |||||||| | | ||||||| ||||
Sbjct 1180 AGCCTGGACAATGTTTTCCTCTGAAAGGTAGCGAGGGCTATGTGCAAATCAGGCTGAGAG 1239
Query 1046 CACCAATAATTCCAGAGGCCGTT-ACCTTGGAGCATGTCTCTGAG-GCTGTAGCGTATGA 1103
|||||| || |||||||| || || ||||||||||| || || | |||||| || ||
Sbjct 1240 GACCAATCATACCAGAGGCT-TTCACATTGGAGCATGTAGCTAAGAG-TGTAGCCTACGA 1297
Query 1104 CAGATCGAGCGCCCCAAAGGATTGCCGGGTATCAGGATGGCT--AGGTGACATAGA-TA- 1159
||||||||| || ||||| |||||||| |||||||||| || | | ||| || |
Sbjct 1298 CAGATCGAGTGCTCCAAAAGATTGCCGTGTATCAGGATCCCTGCAAG-GACCG-GAATCC 1355
Query 1160 T--G-G-AGACTGA-AACCATGCC-CATTCTTACAGAATTCAGTTACGACTTAGACAGGT 1213
| | | |||| || ||| |||| | |||| ||||| |||| ||||||| |||||||||
Sbjct 1356 TCAGCGGAGACAGAGAAC-ATGCAAC-TTCTAACAGAGTTCACTTACGACCTAGACAGGT 1413
Query 1214 CCAATGCACAGACATTCGACAT-TGCAGAGTCTGCTCAT--TCGGGACTTGTCAACACTG 1270
| || ||||| |||||| |||| | |||||| ||| || || || || | ||||
Sbjct 1414 CGAACGCACAAACATTCAACATCTT-AGAGTCA--TCAAGCTCTGGTCTAATCGATACTG 1470
Query 1271 TCAGGCTAGACTTCAATTCCAACCATGGAAGCT-CTTCACACACTTGCATCTACCGCTTC 1329
||||||||||||||| || ||||| |||||| || | ||||||||||||||||| |||
Sbjct 1471 TCAGGCTAGACTTCACCTCGAACCACGGAAGCGACT-CGCACACTTGCATCTACCGGTTC 1529
Query 1330 AGGGTTCATGG 1340
|||||||||||
Sbjct 1530 AGGGTTCATGG 1540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73744600605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5