BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg497466
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05950.1 | Symbols: | RmlC-like cupins superfamily protein ... 965 0.0
> AT3G05950.1 | Symbols: | RmlC-like cupins superfamily protein
| chr3:1781067-1782007 REVERSE LENGTH=796
Length=796
Score = 965 bits (522), Expect = 0.0
Identities = 571/595 (96%), Gaps = 2/595 (0%)
Strand=Plus/Plus
Query 1 TTTTGTGTTGCCGTCGATGACGCTAATGGCGTTTTCGTGAATGGAAAATTCTGCAAAGAC 60
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 140 TTTTGTGTTGCCGTCGATGACGCTAGTGGTGTTTTCGTGAATGGAAAATTCTGCAAAGAC 199
Query 61 CCAAAATACGTGAAAGCTGAAGACTTTTTTACTTCTGGACTAAACATTGCCGGAAACACT 120
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 200 CCAAAATACGTGAAAGCTGAAGACTTTTTTACTTCCGGACTAAACATCGCCGGAAACACA 259
Query 121 ATAAACCGCGTTGGCTCCAACGTTACAAACGCTAACGTTGACAAAATCCCTGGACTCAAC 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 260 ATAAACCGCGTTGGCTCCAACGTTACAAACGTTAACGTTGACAAAATCCCTGGACTCAAC 319
Query 181 ACACTCGGTGTGTCTCTTGTCCGAATTGACTTTGCCCCGGGAGGTCAAAACCCACCACAC 240
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 320 ACCCTCGGAGTGTCTCTTGTCCGAATTGACTTTGCCCCGGGAGGTCAAAACCCGCCACAC 379
Query 241 ACGCACCCACGAGCCACCGAGATCCTCGTGGTTGTCGAAGGAACGCTCTTAGTCGGGTTT 300
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 380 ACGCACCCACGAGCCACTGAGATCCTCGTGGTTGTCGAAGGAACACTCTTAGTCGGTTTT 439
Query 301 GTGACATCGAACCAAGACAACAACAGATTGTTCTCAAAGGTTCTTTACCCGGGAGACGTA 360
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GTAACATCGAACCAAGACAACAACAGATTGTTCTCAAAGGTTCTTTACCCGGGAGACGT- 498
Query 361 TTT-GTGTTTCCCATAGGAATGATACATTTTCAAGTGAACGTTGGGAGGACGAACGCAGT 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TTTCGTGTTTCCCATAGGAATGATACATTTTCAAGTGAACGTTGGGAGGACGAACGCAGT 558
Query 420 TGCGTTTGCTGGTCTTGGTAGCCAAAATCCAGGTACGATAACAATCGCAGACGCGGTTTT 479
|||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||
Sbjct 559 TGCGTTTGCTGGTCTTGGTAGCCAAAATCCCGGTACAATCACAATCGCAGACGCCGTTTT 618
Query 480 TGGATCGAAGCCTTTGATTACGCCGGAGATTTTAGCTAAAGCGTTTCAGCTGGATGTGAA 539
|||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 619 TGGATCGAAGCCTTCGATTATGCCGGAGATTTTAGCAAAAGCGTTTCAGCTGGATGTGAA 678
Query 540 CGTGGTTAGATATCTCGAGGCAAGGTTTTCTTCCAATTATGATCGTCATTATTAA 594
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 679 CGTGGTTAAATATCTCGAGGCAAGATTTTCTTCCAATTATGATCGTCATTATTAA 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28583229643
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5